Array 1 429315-430501 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRH01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1636 NODE_2_length_664865_cov_60.0609_ID_3097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429315 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 429376 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 429437 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 429498 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 429559 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 429620 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 429681 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 429742 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 429803 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 429864 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 429925 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 429986 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 430047 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 430108 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 430169 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430230 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430291 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 430352 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 430413 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 430474 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446672-448168 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRH01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1636 NODE_2_length_664865_cov_60.0609_ID_3097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446672 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 446733 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 446794 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 446855 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 446916 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 446977 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 447038 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 447099 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 447160 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 447222 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 447284 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 447345 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 447406 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 447467 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 447528 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 447589 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 447650 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 447711 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 447773 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 447834 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 447895 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 447956 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 448017 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 448078 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 448139 29 93.1 0 A..............A............. | A [448165] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //