Array 1 40019-42625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAT010000043.1 Shewanella algae strain 08MAS2314 scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40019 28 100.0 32 ............................ TGCTTCACAGATGATGGGAAAAGTGATGGCAG 40079 28 100.0 32 ............................ GGTAGATGCAATGTGTACCTATGCATTTATTC 40139 28 100.0 32 ............................ GCTGCAAGAGCGGGTCGATGTGTAAATTGGCA 40199 28 100.0 32 ............................ ACTTTGCTGCGACTCCTTGAGCCTGCGATTCT 40259 28 100.0 32 ............................ GCCTGCTGTTGCGTTTGCTGCGAATGCGATAG 40319 28 100.0 32 ............................ ACCACGCAACGACCTTCCACATACGCCTTATC 40379 28 100.0 32 ............................ ACAACGCGAAGCGGTAAAACATTCCGGGCAAC 40439 28 100.0 32 ............................ CGAATAGTGATGATAGCCAGCCCATTCAAACC 40499 28 100.0 32 ............................ AACCGCACCTTGCCATTGTGTGCCGGTGGCTT 40559 28 100.0 32 ............................ AGATAGGTATTCAACAACGTGAACAAAGGAAT 40619 28 100.0 32 ............................ ACTCGCCGGGTTTGCGATTTTTATCCAGATAG 40679 28 100.0 32 ............................ ATCAATAAACCGCTGATGGCAATGAGTGAAGA 40739 28 100.0 31 ............................ TGCAGATTTCATTGAGGCAGATTCGATTAGT 40798 28 100.0 32 ............................ GTAACGGCGTTATGCCAGTCACTGACAATAGT 40858 28 100.0 32 ............................ CACACCGGGCATAGCTTAGGGGGATTTATGAA 40918 28 100.0 32 ............................ ATCAGCGTGAAGCGCCGATTTTGCATTACTGC 40978 28 100.0 32 ............................ ATACATGCACGGCGGGTGGGTCGCAATGGGTT 41038 28 100.0 32 ............................ TTAATCGCAACCCATGCGGTACCCTTGTAGAT 41098 28 100.0 32 ............................ TAGATGATGAAGATGTTATGTCAACAGTATCT 41158 28 100.0 32 ............................ TTCTTGCCAGTGAAATCCTGTTGTTCGTTTAC 41218 28 100.0 32 ............................ ATCCAGATTGCATCAGGGTGTTGCCGTAATAT 41278 28 100.0 32 ............................ TTCATACTCCGGCAATTCATCGTCATTTTGCT 41338 28 100.0 32 ............................ TTTGGACTGCGCAGCTCGAAGATGTAATCCCG 41398 28 100.0 32 ............................ AGTACTGTCAGCTCATCACGAATGACAGCCAA 41458 28 100.0 32 ............................ TTATAGACTTCACCGCGCCAGGTAATACCAAT 41518 28 100.0 32 ............................ AGCTTCCTAGGCTTTTAACCGCTGCCAACGCC 41578 28 100.0 32 ............................ ACAGGAGAGAGCAGCGGCACGATTCGGACTTG 41638 28 100.0 32 ............................ TGATATGCCGGAACCCCACGTTATCGAGTCAT 41698 28 100.0 32 ............................ GCTATGAGAACACAACCCATGCATCGCCATAG 41758 28 100.0 32 ............................ GAGGAACACGATTATTATCAGTTCATCCATCA 41818 28 96.4 32 ......A..................... GCTATGCCTCCCGTATTCGCATAAGCGGAAGG 41878 28 100.0 32 ............................ AGTCGCGCCATAATATTTGGAGGCTGATATGT 41938 28 100.0 32 ............................ TGATATCTGTATGGCGGCCCTTTGGGTTGCCA 41998 28 100.0 32 ............................ GCTATCAAGCAGCTTGCCCAAAGCTACCTTAG 42058 28 100.0 32 ............................ ATTGTGCATCTTCGGAATCAAGTTCAAAAGCC 42118 28 100.0 32 ............................ TAAACAGAATGCACCTATCACCTGTCTGTAAC 42178 28 100.0 32 ............................ TATGCGGGCATGCTCACTGGCCTCATTGAAAC 42238 28 100.0 32 ............................ TCTTGTTCCAGAGAATCGTTTGCAGAGGCGCT 42298 28 100.0 32 ............................ AGTACAATGGGGCTGGCCAGAATGTTGAAGAT 42358 28 100.0 32 ............................ GGCAACGGTCAGCACCTGGCACTGGCCTCGAT 42418 28 96.4 32 .............A.............. ATCTGCAACCGGCCTACGGCGGTAAGAGACAA 42478 28 100.0 32 ............................ TTTAGCCGTATTCCCAACGCTGTCCATGTTGT 42538 28 96.4 32 .......A.................... TAGAATAGCGAGAACCGTTAGAAACGTGTTTG 42598 28 89.3 0 .........T..T........G...... | ========== ====== ====== ====== ============================ ================================ ================== 44 28 99.5 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGCAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGAACTTTTAAGCACCAAAGGATGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGGTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAGTATCCGAACGTCTTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAATATAGCGGCCCGGCTCAAGGCAGCATGTCTACTTGCAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTCGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGTTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGACCGCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //