Array 1 1030992-1033094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026327.1 Salmonella enterica subsp. enterica serovar Kentucky strain PU131 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1030992 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 1031053 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 1031114 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 1031175 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 1031237 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1031298 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 1031359 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 1031420 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 1031481 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 1031542 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 1031603 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 1031664 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 1031725 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 1031786 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 1031847 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 1031908 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 1031969 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 1032030 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 1032091 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 1032152 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 1032213 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 1032274 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 1032335 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 1032396 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 1032457 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 1032518 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 1032579 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 1032640 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 1032701 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 1032762 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 1032823 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 1032884 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 1032945 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 1033006 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 1033067 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1050727-1052708 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026327.1 Salmonella enterica subsp. enterica serovar Kentucky strain PU131 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1050727 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 1050788 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 1050849 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 1050910 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 1050971 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 1051032 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 1051093 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 1051154 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 1051215 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 1051276 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 1051337 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 1051398 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1051459 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 1051520 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 1051581 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 1051642 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 1051703 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1051764 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 1051825 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 1051886 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 1051947 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 1052008 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 1052069 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 1052130 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 1052191 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 1052252 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 1052313 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 1052374 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 1052435 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 1052496 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 1052557 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1052618 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 1052679 29 100.0 0 ............................. | A [1052706] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //