Array 1 30850-29178 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIR01000003.1 [Arcobacter] porcinus strain 117434 AAX28_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 30849 37 100.0 35 ..................................... GCTTTTATTTGTCCTAAGATGTCTGCTAATTGAGT 30777 37 100.0 40 ..................................... CATCCAGGATGCCATCTTCTTATTTCCACTCTTGTGGCTA 30700 37 100.0 36 ..................................... TGAATCTTCATTATTGAGATTCCACAAAGTTTGTAA 30627 37 100.0 41 ..................................... CTCCCTAGATGAGTGGGATTTCCACTCATCTTTTATATTTA 30549 37 100.0 35 ..................................... ATAGAATATAATTAACACCTTCAACATTTTTTCTT 30477 37 100.0 40 ..................................... AATAGTGATGAAACTAAAAATAATGGAATTCCTACAGGTA 30400 37 100.0 34 ..................................... ATCATTTAGCTCTTTCATACATAAGGGGATATCC 30329 37 100.0 40 ..................................... TTGGATTTTATTTAAAATATTAGGGTTGCACAAAGTACAA 30252 37 100.0 37 ..................................... TCTTCTGATACAATGATAAATCCATTTGAACGATAAT 30178 37 100.0 39 ..................................... TTTCTTCAGCAACTATCATAAAATTAAGGAATTTACATC 30102 37 100.0 39 ..................................... GTTGAATGATATTAAGACATTTTCCCTGTCATCCATTTT 30026 37 100.0 37 ..................................... GAATATTCTGTTCCCATAACTGCTCCAAGTATTACAG 29952 37 100.0 39 ..................................... CTCCTATAGAGATATATTTTTTATTAAATTTTTCTGCGA 29876 37 100.0 38 ..................................... TTCCCACCACTCACAGGTATTAATTTCATCATTGTCTC 29801 37 100.0 34 ..................................... CATTTACAATGCTAGAGAAAACATCCATAGAGTA 29730 37 100.0 38 ..................................... ACTAAGCCACTTGGCTCAATTGTTAGAGTTTTTTCACC 29655 37 100.0 36 ..................................... AATCATATATAGAAACCTTTAAGTTTAAAGGCTTTA 29582 37 100.0 37 ..................................... GTAATTTGCTACTTCCTTCCAAATATATTCTTCCCAT 29508 37 100.0 37 ..................................... TTTTTGTACTTCCATCATCTTTAAAATCCCTTCATTA 29434 37 100.0 35 ..................................... ATTAATAGCACTAAAAGAGTGCTAAATATCATTTC 29362 37 100.0 38 ..................................... AAGCAGCCTCTGTTAATCTAACCAATCCATTAATATTT 29287 37 100.0 36 ..................................... ACATCTGTTCCATAAAAGAAGTTTGCTTCTTTTACG 29214 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 100.0 37 ATTCAATAACAATGACCCGATTTAAGGGGATTAAGAC # Left flank : TTTACGACTATATCATCTTTGTGAGAGTTGTATTCCAAAATCTTTTGAGCTTTGTAATAGGGAGGAAATTTTTGAAAAAAAAGAGTATTTTATATAAAAAATAGTTTGCGAACTTTTTTTGACTGATTTAAGGGCTTTTAAGCTAAACTTCAAGATAAAAAGTTCGCAAACCTATGTTTTATAAAAGTTAATATATAGGTTTGCGAGCTTTTAGTTTTGTTTAAGATTTAAAATGCCATTTTATGGTACTTCTGAAACTTAAATAAAGCTAAAAAATAGAAAATCTCTATTTTTGAGTTTTTTATCTTTTGGTTTGCGAACTTTTTTTATAAGAAAAAGTCCATAAAATCGAGTTTTTTAACAATTTATTGTCAAAACACTAGAGTTGCTTTTTTAAAAATGGTATATATTTGCGAACTTTTTTGATACATTATGAGTATATAGTAATTTTAAGTAAAGATTAAATACTATTTTAGCTGTGAAAAATGGATTTAATGGCT # Right flank : AATGTATCAAAAAAATTTTTTGATGTCGAAGATGCGTTAATAAATTCAATAACAATGACCCGATTATTTTTGCCTTTGGCAAATTCAGTCATCACTAAAAATTACGAAAAGCTAAAGCTTATTCTATTTTTAGGACTCAGAAGAGGGGATTTATAGAAATGGAATTTTTATCAATACTTGCTTTGCAATATTTCCTTCTAAGCTATTCTATCAATAAAGCAGGTGGTGAAATTAAAATAAAGATTTGACTAAAGTCTAATTTCGAAATTAAGAATTAATTTTTTTCTTGAGGTAAAATTATATAAAATAAATTTAACGACAGTTTCTGTCAAAAAGATATATTAGAATTCTTCCAAATTAAAAGGGAGAAAAAATGAAAAAATCAATTATCTTATCACTCGTTTTAATAGGAAGTTCAAATCTATTATTTGCAAGTAATAAAGTATATAGTACTAATTTAGAGTATCACTATAATTATGGTAATAAAAAATGTTTAAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAATAACAATGACCCGATTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //