Array 1 208934-207886 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVI01000002.1 Pasteurella multocida strain HNA03 Contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 208933 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 208873 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 208813 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 208753 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 208693 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 208633 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 208573 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 208513 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 208453 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 208393 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208333 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208273 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208213 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208153 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208093 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208033 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 207973 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 207913 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.70,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92598-91371 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVI01000004.1 Pasteurella multocida strain HNA03 Contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92597 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 92537 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 92477 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 92417 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 92357 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 92297 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 92237 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 92177 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 92117 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 92057 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 91997 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 91937 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 91877 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 91817 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 91757 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91697 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91637 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91577 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91517 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91457 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91397 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //