Array 1 15945-20773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPO01000051.1 Methanosarcina mazei strain 3.H.A.2.1 scaffold43_1_size28018-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 15945 37 100.0 35 ..................................... ACCCTCGTGACGACAGGAGAGCCGCCAGTATTCTC 16017 37 100.0 35 ..................................... AACAGTCAGTTCAAGAAATTGAAGCCCCGATATCA 16089 37 100.0 36 ..................................... ATATATGCTTCAGGGGATAGACAATAAGTTTCATAA 16162 37 100.0 36 ..................................... AGATATTGAGCCTTCGGGATAAATTTAAAATCCGAG 16235 37 100.0 35 ..................................... ATTGGTTCTGGATACTCAGACCAACAGAAAAACTG 16307 37 100.0 36 ..................................... CAATCAAAATTCAAGGTTATCGACTCAGAATTACAA 16380 37 100.0 36 ..................................... GTATAACCATATGTCCCAATATTGGAACTTCCCAAA 16453 37 100.0 35 ..................................... AGTGTTGTGTCTCTACCAGCCCCGAGACGGCAATA 16525 37 100.0 36 ..................................... CACCCTATTATCGTGTAAGTTGTTGTTTTTTTCATG 16598 37 100.0 37 ..................................... TAATAAATTCTTAACCTTGTGAGTTCCAGTTGTTCTG 16672 37 100.0 35 ..................................... TTATCTTTATCCGGTACGTAGTCCGTAAATTCCTT 16744 37 100.0 37 ..................................... TCAGGGACGGTGAAAGGAGCAACCGGGGCAAATCAGA 16818 37 100.0 35 ..................................... TGAATTCGGCAATTGCTTCATGCATTTCTCTGAGG 16890 37 100.0 33 ..................................... AGGAGATATTGGGAAGAATTGTTACAGGCAGGT 16960 37 100.0 35 ..................................... TTAAGGTCGTCTGCATAAGCGACTGATGTATATAA 17032 37 100.0 35 ..................................... CATATTCATCTCCCATGAATGGTATTGAGCCTGTC 17104 37 100.0 36 ..................................... CGAATCCTATAGGGTGTGGTGAGTGCCCATCACAAA 17177 37 100.0 37 ..................................... TCTAAATTACGAATTGACATCTGCAAGGCTTGTGAAT 17251 37 100.0 35 ..................................... AGCACGGCACTTGGATTATTGATATCTCCTATAGG 17323 37 100.0 36 ..................................... TATGTTGCTCGAAATATATCAAGGTCAAAGTTACGA 17396 37 100.0 37 ..................................... AAAGCTCGCTCAGTCCATTCTATACCATATACAAGTA 17470 37 100.0 35 ..................................... TGACATCTCTGCCTTCAATGCGTTGGAAGTTCCTA 17542 37 100.0 36 ..................................... GTGATAATCATGACAGTATCAGAAAAGAGTTTTACG 17615 37 100.0 36 ..................................... TGTATACAACATGCCAACGATGCACATCTTTAGATC 17688 37 100.0 34 ..................................... AGGCATATCGTATATTGTAGTAAGGGCATAAGGC 17759 37 100.0 38 ..................................... CGGTAAAAACCGCATAAGCTGTTCCGTTTTCAAGCTCG 17834 37 100.0 35 ..................................... ACACAGAGAACACGGCAGAAGTCAAAGATAAGGCA 17906 37 100.0 36 ..................................... CATTAGTGCAATGTTCAACCCGGAGCCCGTCCCCTA 17979 37 100.0 35 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAA 18051 37 100.0 36 ..................................... CAACGGATTAGGACCACGAAGAAAAGAATTTTGAGT 18124 37 100.0 36 ..................................... CAGATGCTACTCTTGCGGCATCGGGAGACAGTCTCA 18197 37 100.0 35 ..................................... CCCGGCCCCGTTGTGACCTCACAGAATATATTCAT 18269 37 100.0 35 ..................................... TTAAAAAACACTGTGAAAATCTGAAATACATTGAT 18341 37 100.0 34 ..................................... CTGTCGAATGTGTCTGCAAATCTTGTGTTAAGCG 18412 37 100.0 36 ..................................... ATAGATTGTTCAGTTGTCAATCCGTTGTCAGCTTGT 18485 37 100.0 38 ..................................... TTTATATGTTAACACTGTTAACGACTGTCTCAAAAAAA 18560 37 100.0 35 ..................................... AATCAACTCCATTAAAATTCCTGGTAAATCCCATC 18632 37 100.0 35 ..................................... ACCATGATATACACCGAATCAGAACCGGCTTTCTG 18704 37 100.0 36 ..................................... TATATATACGATATTAAATTCATTTTAGATCTTATT 18777 37 100.0 36 ..................................... TTTCTGATATCAGTTTGTCAAGCTTCTTTTTAAGAG 18850 37 100.0 35 ..................................... AGACTTAACTATGCTTGTATCTTAAAACTCGATAT 18922 37 100.0 34 ..................................... TTGTTTCGTCTTTTTCAATCCACCCGTAGTCTAT 18993 37 100.0 35 ..................................... TAAAAAAGAAATCAATAAGAGAATAACGTTTTTCA 19065 37 100.0 35 ..................................... TATCTTTGAAAAAATCCGTATGTACGGGAAGCTTC 19137 37 100.0 36 ..................................... CTTCATCTAGTTTATTCCGCAAAAGCTCCTTTTCTG 19210 37 100.0 37 ..................................... GTGGTCCTATGATCAATGCAAGATAGCCGGGATTGAT 19284 37 100.0 36 ..................................... TTTGGATGGCTTGCCGTCCTCTATACCTTTCATCTT 19357 37 100.0 35 ..................................... CAGCTAAGGTTTTACTCATATCGTGTGGCTCCGAC 19429 37 100.0 35 ..................................... ATTGATACGGAAGTGATGCGGTATAAGCTCCCGTT 19501 37 100.0 36 ..................................... CGCTGATGCTGTTAGCGTTTCTCTATAAGTTCAATT 19574 37 100.0 34 ..................................... TAATTATGTATTTTTTTTGCATTGTTGTGGTATG 19645 37 100.0 36 ..................................... TGCGTCCCCCTGAATAATCCCCATATACCACAAATT 19718 37 100.0 35 ..................................... AAAAAAAGAATTAAAAGAGTAAAGGAATTTAGATT 19790 37 100.0 35 ..................................... TTATCGAGTTATCGCCATAAAGTATAAATAGTATT 19862 37 100.0 37 ..................................... TTGAAAGTATTCGCAATATAAACATGCACAATAGGTA 19936 37 100.0 36 ..................................... GTATAATCAGGAGCATACTTAAACGTTAATTTCATA 20009 37 100.0 37 ..................................... ATTTCCACGTCTGCGCCTAATGTCGTGTCGTCCCATA 20083 37 100.0 37 ..................................... AAGAGGGTGTCGATTATTTCCTCTTGCATTGTCTTCT 20157 37 100.0 35 ..................................... CTTTTGGGACTCCTGCAACACTCACCTGCAAATAT 20229 37 100.0 37 ..................................... ATTTTACTAAGTGCGCAAAAGCGTTTTTTAGATCATT 20303 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 20375 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 20448 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 20520 37 100.0 35 ..................................... TGGGAGGATGATAAAATCAACTCTCAACCCTAATA 20592 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 20665 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 20737 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 67 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 45371-52001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPO01000025.1 Methanosarcina mazei strain 3.H.A.2.1 scaffold8_1_size73144-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 45371 37 100.0 36 ..................................... ATTGTATTACCGGACCCTATCAAAATAATAAACGGT 45444 37 100.0 36 ..................................... TGTAAAATTGGATATTACAATGTGATAAATGGAGAA 45517 37 100.0 35 ..................................... ACATTTCCGTGCTCGGAGGGTTTGAATATGAAATT 45589 37 100.0 34 ..................................... CATAAGCAATCTGGATACCATCAGAGAACGAATT 45660 37 100.0 35 ..................................... GGAGGATCAGAAGTACAACTAATGGTTGTCGACAT 45732 37 100.0 35 ..................................... CATACCCTGAGATGGTCAGTCATGCCATCTTTTTT 45804 37 100.0 35 ..................................... TAATGCCTGACACGGACCACCTAACTTATTATAAA 45876 37 100.0 35 ..................................... TTTTTTTCGTCCATCCATTGGTTCCACATTTTCAC 45948 37 100.0 37 ..................................... AAATTCATTTTTACCCCCTTCACATCCAGGACATATA 46022 37 100.0 38 ..................................... TGTGGTCAAATATCATCATGTTAAAGCACCCCTTCGAG 46097 37 100.0 35 ..................................... TTAAAAATATTGACATTATGGACTCCTGAAATCAA 46169 37 100.0 36 ..................................... TAGTTATACGGTACAAAATATTTAGATGGGAGAGTT 46242 37 100.0 37 ..................................... AAAAAATAGAATCCACTCAAACCGAAGCCCTGAATAT 46316 37 100.0 35 ..................................... CACGGATCTGCATGTCAGCCGTGTTTGACGTTGTT 46388 37 100.0 35 ..................................... ATAGGTCTTCTCAAATGCCAGAAACATGTTTTCCC 46460 37 100.0 35 ..................................... ATTGACAGCGCAACCGATTCAATCAAGGGAGAGCC 46532 37 100.0 35 ..................................... GTCATAAATTCCTCTAATTTTTCAACGTGTTCGAT 46604 37 100.0 34 ..................................... AAAATACTAGAAAAAACGGGACTAAGAGAATACA 46675 37 100.0 36 ..................................... CCCGCAGAATTATTCGAAACATAATTCGTTTCAGCA 46748 37 100.0 36 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCC 46821 37 100.0 35 ..................................... AAAAGCAAAACCAGGCAAAAAAACAACATGAACAA 46893 37 100.0 43 ..................................... TCCGGGTATGCCCGCGAGACTCTCCTCATGGTTGCGATTTTGC 46973 37 100.0 38 ..................................... TTCAGTTTCGGAGGACATTTTAAGCCCTCGCGAGATAT 47048 37 100.0 37 ..................................... TACTGTTCTGTGAGTATGTCGTACTTGAATAATCATG 47122 37 100.0 34 ..................................... TTAAATATTTTGAAACTTGCAAATTCAAAGAAGA 47193 37 100.0 37 ..................................... CATTTTGGGTATTGGGCTTTTTTTGTGCCGAGGTCGA 47267 37 100.0 35 ..................................... ATGTCCTGTCATAGAGGGATATGAACCGGGATTCT 47339 37 100.0 36 ..................................... CAATAAGGTCGCTGCTTTCCGGGCTTGTGCTGCCTC 47412 37 100.0 37 ..................................... AATTATTGTGATAAACTTCTGCAGCTGTAGTAAAGAG 47486 37 100.0 37 ..................................... AAAACGATGTCGCCGGGATTACATCGGACTGTATGAG 47560 37 100.0 37 ..................................... ACATAACTTTTAGCTTCGGCTGCCGTGTCGAATTTCC 47634 37 100.0 34 ..................................... TAATCGTCGAGTTCCGCCCACAGTTCAAACATTT 47705 37 100.0 36 ..................................... TTTCAAGAACAGAGAAGAAGCAGAAAGCGCGACAAT 47778 37 100.0 35 ..................................... TGCAGCCGACGAAAGCAAAAACATTTCTCTTGCAC 47850 37 100.0 40 ..................................... ATCCTCCCGCAACTCCTTATTTCTCATGCTAGCGTTCACT 47927 37 100.0 35 ..................................... GACATTGAAACTGACAACACAGAAGGCAATGGACT 47999 37 100.0 35 ..................................... CTACTGATAGAATTAATTCGAATGGGACGTTCTAT 48071 37 100.0 38 ..................................... CAGATTTGTTTTACTCTTCTAAGAGTAGGTATTGACTC 48146 37 100.0 35 ..................................... TATGGCCTTGGCCTCGCGCAAAATTCGCCTATAGG 48218 37 100.0 37 ..................................... CATTAAAAAAGGTAACAGCCCGAAGTATATCCAAAAA 48292 37 100.0 36 ..................................... TCATAAAATATGCGTTTTCTTCCTCGTTTCTCCATA 48365 37 100.0 33 ..................................... CAGACTTAAGGAATCTATTGTTTGGATGGATTA 48435 37 100.0 37 ..................................... AGAGTGCGACTTTTAGAATACAACTTGATAAAATACT 48509 37 100.0 38 ..................................... GTTTCAGGGAATTCATTTCTAAGAACTCTTGCAGAATT 48584 37 100.0 38 ..................................... ACTACAAGGCGTTCCTCAAAGTAATACAATAATAAAAA 48659 37 100.0 37 ..................................... ACGAATCCCATTAACCTGTATTCAGTCGCTTTCTTGT 48733 37 100.0 36 ..................................... TTTTGCAAATTAAGCTCATCCCTAATCCATGCCGGA 48806 37 100.0 34 ..................................... TAGATGTTGTCGGAGGGGACATCTACAGCAATGA 48877 37 100.0 36 ..................................... TTTCACACTCTCCAAATAAAAAAGGGAAATCTGAAT 48950 37 100.0 36 ..................................... TATACAACTAAAAATAATTAACAGTGATAAAAACAT 49023 37 100.0 36 ..................................... AGGATCAGGACGACGGCAATAATACTGAAGAATCCT 49096 37 100.0 36 ..................................... CGCGGGAACGGTTGGAACTGCAGGGCACAGCGGGGA 49169 37 100.0 35 ..................................... AATTATATATATTGTTATAGGGTTAATAATCATGG 49241 37 100.0 34 ..................................... AAATTCCTTCTGAAGAATTGAACGGGGCTTCAGT 49312 37 100.0 35 ..................................... TGCTCTTGCCAATATTCTTAAAAACGTTATCGTGT 49384 37 100.0 37 ..................................... AGGGCCTTTGCGATCTCGCTATACTGGCTTATATTAA 49458 37 100.0 35 ..................................... TCTCCTCTTGCATTTCTGTCTCCTATTTTTTGGCA 49530 37 100.0 35 ..................................... TGCAATGTCGGGGACCAATCCAGGTCAGCCTCGGT 49602 37 100.0 36 ..................................... AGAATTTCAATTTCCCTCTTTGCTGCGCTGCCTCCT 49675 37 100.0 35 ..................................... AGGTGTTTCGATGGCTCTGTGTTCGATTGCTGACG 49747 37 100.0 35 ..................................... CAACAATAGAATCGTGCGCCCTGGCCACGAGGGGG 49819 37 100.0 35 ..................................... CATTATTCCAGGTGAATGTCATATTTCCATTTGTA 49891 37 100.0 37 ..................................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 49965 37 100.0 33 ..................................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 50035 37 100.0 35 ..................................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 50107 37 97.3 34 .....A............................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 50178 37 97.3 37 .....A............................... TGTCATATGGGACTGTCGGTATGCAGGATATCAGACT 50252 37 97.3 36 .....A............................... CAAAAAGTACGATAGTCAAGGACATAATCACCGAAA 50325 37 97.3 35 .....A............................... GGAGTGACACGGACGAACTCCTTGAAAATGTTAAA 50397 37 97.3 35 .....A............................... CAGGTGGTCTCGCTCGACGGTACTTTCAGCACATG 50469 37 97.3 37 .....A............................... TGTTTATCAGATTTCAGATATCTGGGAAGTTAGAGAA 50543 37 97.3 36 .....A............................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 50616 37 97.3 34 .....A............................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 50687 37 97.3 36 .....A............................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 50760 37 97.3 35 .....A............................... TACAAATCCTGGACATTTCCAGAATATGAATTCCC 50832 37 97.3 34 .....A............................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 50903 37 97.3 37 .....A............................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 50977 37 97.3 35 .....A............................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 51049 37 97.3 34 .....A............................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 51120 37 97.3 43 .....A............................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 51200 37 97.3 32 .....A............................... TTATCAGCGTGGATATAATACTTATATTTCTT 51269 37 97.3 37 .....A............................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 51343 37 97.3 36 .....A............................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 51416 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 51491 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 51566 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 51637 37 91.9 71 .....A.............................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 51745 37 81.1 35 TG...A...T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [51750] 51818 37 83.8 34 .G...A...T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [51825] 51890 37 81.1 36 GG...A...T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [51895] 51964 37 78.4 0 TG...A...T.GCT......................G | A [51969] ========== ====== ====== ====== ===================================== ======================================================================= ================== 91 37 98.5 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 63823-67195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPO01000025.1 Methanosarcina mazei strain 3.H.A.2.1 scaffold8_1_size73144-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 63823 37 100.0 35 ..................................... GAATTCACGTACCCCCCGTCTTCGTTTTCAACATT 63895 37 100.0 36 ..................................... TTTTATATTCATCGTATTCACAATCCCATTTTTCAG 63968 37 100.0 35 ..................................... TCTAAGGCAAATCAAAGAAAAATGTACATATATTG 64040 37 100.0 36 ..................................... TAAAGAGATTGAAAGGTTCCGAGCAGATGCCCGGTT 64113 37 100.0 37 ..................................... TACTACATAGTATAATACTACTTAGTATAACAAAATT 64187 37 100.0 34 ..................................... CTACTTCTATTATATCGCTCAAACTCATGTATTT 64258 37 100.0 34 ..................................... ATATTTGGATAGTAGTTTTGCTTTCGTCCAGGTC 64329 37 100.0 33 ..................................... ACATTGTAAGGCCTGAATGAGAGCTCTCATATA 64399 37 100.0 36 ..................................... AATATAATAATATAGAAAACGTCCATTCATATACAT 64472 37 100.0 38 ..................................... GTAGTAATACAGTTTTAAATGCGGATATTACTAATACG 64547 37 100.0 38 ..................................... TTAATTGCTTTTGAATCAATCGCGGAATCGCTTAAGAA 64622 37 100.0 34 ..................................... AAAACCAAGATCAATAAACCAATATATAAAAAGG 64693 37 100.0 35 ..................................... AGCTCCAGCGAAGGCAATTTCAAATAAATATAATC 64765 37 100.0 37 ..................................... TACAGGTGCGAGAGGCTTGTGAGGTTCTTGTATTATA 64839 37 100.0 35 ..................................... TCCAGTGGTCAGGTGTTTCGCCGTGTATTTTCTCA 64911 37 100.0 36 ..................................... TAAGAATAACACCTACAGGTAAAATAGTACTTGAAG 64984 37 100.0 36 ..................................... CTGCTGATCTGTCCGGCAATCCGGTAAACATCTTTT 65057 37 100.0 35 ..................................... AGCCTCTGTTTGTTGTACTGAGTAGGAATGCATAT 65129 37 100.0 35 ..................................... TATACTCCCCTGCTCTTTGCTTTCCTCTTCTTTTT 65201 37 100.0 36 ..................................... TTTTTGTATAAATCAGTTTAATAATAATGTTCTTCA 65274 37 100.0 35 ..................................... TAAACTGTCTGGTTAACAATGTCTATATAAGAATT 65346 37 100.0 34 ..................................... TGAAATCATTCTCCCTGAAAATGTCACCGAAATT 65417 37 100.0 37 ..................................... TTCTGTTATCCTGGCTATCTGGTTGAAAAGATTACTT 65491 37 100.0 37 ..................................... CAGGCGGCATACTGGAGGCAGTTGACAGCAAGGATTC 65565 37 100.0 35 ..................................... CAATTATCTTCTTTCCTATTCTCCTTACGTCAACT 65637 37 100.0 34 ..................................... ATATTTTCCTCAATGACTATTGCCAGCGCGGGGA 65708 37 100.0 34 ..................................... TGAGTCTGTCTGCTGCACTCTCGTATTCTGTCCT 65779 37 100.0 37 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAATAAT 65853 37 100.0 36 ..................................... ATCAGTGCGATAACATTGCAAAGTTCATCCTTTTCC 65926 37 100.0 36 ..................................... AAAGTCAAATATTCCACTTTTTCAGGATCGGTGTAC 65999 37 100.0 36 ..................................... TTATTTCCAGAATTGAACAGTTAGAAGCTAATGTGG 66072 37 100.0 35 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATTC 66144 37 100.0 34 ..................................... TAAGAGACAAGTTTGGACTTTTAGACGGGGATAG 66215 37 100.0 35 ..................................... CGGGAGCTAAGACGGCAACATGGACGACTCTTTTT 66287 37 100.0 35 ..................................... TAGCTCCGGGTGATGTTTTTGAAGTTAAAATAGGT 66359 37 100.0 35 ..................................... TTTTCAATCGCACACGCAAGACCCTGACTGAACTT 66431 37 100.0 36 ..................................... AATGTTACTATCTGTAAGTAATAGTCGTTGCTCCGT 66504 37 100.0 33 ..................................... TATTAAACGCTCAAGAAACAAGTAATGATATTT 66574 37 100.0 35 ..................................... TTTTAGGTTATTATCACGCTGCTTTAACATTCTCA 66646 37 100.0 36 ..................................... TTGCGATTTGGGATGTAGCTGACGACAGGGTTGATT 66719 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 66791 37 100.0 37 ..................................... TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 66865 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 66938 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 67012 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 67084 37 75.7 37 TG...A...GT..T....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC C [67095] 67159 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ====================================== ================== 47 37 99.1 36 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCGGTGCCGTATGGGATACCGTAAAAGAGGATATTCCTGCTCTCAAAGAAGAAATCACTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCAGAATATTGCCCCTCTTTCTGATCCTGCCTAGGGACGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGTCAAATAACGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //