Array 1 695044-693715 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDMO01000014.1 Listeria monocytogenes strain Lm217 contig000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 695043 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 694977 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 694912 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 694848 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 694782 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [694773] 694714 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 694649 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 694584 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 694518 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 694454 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 694389 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 694324 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 694259 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 694196 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 694133 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 694067 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 694004 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 693939 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 693873 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 693808 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 693744 29 93.1 0 .......................C....C | A [693719] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8082-5335 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDMO01000011.1 Listeria monocytogenes strain Lm217 contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8081 36 100.0 30 .................................... TTGTGATTGTTTCGCTGTCCACTACAACGC 8015 36 100.0 30 .................................... TAGTGACCTGGCAACACTACCTGTTCCTGC 7949 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7883 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7817 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7751 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7685 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7619 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7553 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7487 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7421 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7355 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7289 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7223 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7157 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7090 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7024 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6958 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6892 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6826 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6760 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6694 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6628 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6562 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6496 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6430 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6364 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6298 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6232 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6166 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6100 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6034 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5968 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5902 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5836 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5770 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5704 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5638 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5571 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5505 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5439 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5373 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5338,5341,5346] ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //