Array 1 220371-220093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH932283.1 Bergeyella zoohelcum CCUG 30536 supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 220370 47 100.0 30 ............................................... GCTGTGTTAATAGGTAGAAAATCATAACCT 220293 47 100.0 30 ............................................... GTTTTATCGCTTGATATACAAGACGAAGAG 220216 47 100.0 30 ............................................... CTGCACGCCTTTGGTTAGTAACTTCAATCT 220139 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTAACTCATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAGACCAAGGCAATGCAAAAAGCAGCCAATCTCTTTCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTCCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTCAGCCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGACAGACAGAGGATTATTTTTTGAG # Right flank : TATTGACGCAATGACAAGTAAGGATGTGGGGTTGTAACCACCGAAAAAGGCTTTACCATATATTGATATACCTAAAGCATTTTTAAACAATGTGGGGGAAACGGGTGAGATATTTACAAAGGAAAACAGCTATTTTAAAAATACGCCAAAAAAAATCCTCTCGGACTTGGATTATTATAAAGATGGTAATATTCTTATTTCTACAAAAGCCAAGAAATTTACCACTTCTGAAAATGAAAAACCAAGAGTAGAGCGGGAGTATGAGAATAGAATTATTACTGCAAAGGCTCTGCAGGAATATTTTAAAAAGGAAACAAAAGTGCTTCCCGAGATAAAACCAAGCCACTGGGCGTATGATTATCATTTTGAGGGAGTAAAAGAGTATGGCAAAGTACCTGATTTTAAAATAGGTGATGATTTCTGGGAAATGGAAAGCTATGATAACAAGTATAGGAAAAAGAAACTTTGGCATATGATAAAAGAGGGAGCGAAGCAGGCAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTCATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 776355-776963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH932283.1 Bergeyella zoohelcum CCUG 30536 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 776355 29 100.0 35 ............................. TACAAAAAATTAATTAACTTCTCTGATTGGTCTTT 776419 29 100.0 35 ............................. TCTTCATCATAGTAATATCTAGCTGCAGGTATAGT 776483 29 100.0 36 ............................. CTCACTAGGTTTGTAAGTCTCAGGGTATTGATGATA 776548 29 100.0 36 ............................. GTAGTTGTAGGATCAATATATAGCGATTGTGCTGCT 776613 29 100.0 36 ............................. TACTTCCCCACAGTCTTCGCATTTATAATTTTCCAT 776678 29 100.0 36 ............................. GGGAATAAATCCCAAATTAGTTCAACACCTAACACA 776743 29 96.6 35 ........T.................... TCTTTCAATCCAAAAAAGATTAGAGGCTTTTTTAA 776807 29 100.0 35 ............................. CTCTCTTAGTACTATTCATTATACTATTCCATTCA 776871 29 100.0 35 ............................. TTTATTTAAGATTTGATTTTTCGCCCCACTTCTTA 776935 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 99.3 36 ATTCTAATCGCACCATAAGGAATTGAAAC # Left flank : ATATTTCATCTTTTAATTTAATGCTTATGCACATCATATTAGTTTATGACATTAGTGGCAATAAATCTGTAAAAATGCTTAAGCTATGCCGCAGGTATCTGAATTGGGTTCAGAACAGTGTATTTGAAGGAGAGATTACAGAAGCCAAACTGAATCAGTTAATTGCACAGATCCATAGAATCATTAATAAAGAGTTAGACTGTGTCATTATTTATAGTTCCCGCCATTCCAGCTGGGCGGAACGGAAAGTACTGGGCATAGAACAGAATCCCATTAAGAATATTTTGTGATTGTCGTCTATCTATTGTAAATTTGTAGGATAAAGATGTTCTTTGACATTCCGAAAAACATAACACACGCACAGCCAATGAGATAAAACATCGTCTATCTCCTTAGTTTTTAAAGTAAAATAAGACCGACGATTTTTTTAAAAAAAAATAGACTCCAAAAATCACGAAAACATTAGGGTTTTCAGTCTTTTTTACCTACTTTTGTAACCT # Right flank : CTTTTCTAAGAGTTCCCGTTGTTTTTGTTGGTTATAATTCTAATCGCACCATAAGGAATTGAAACTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAATCGCACCATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 777512-777735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH932283.1 Bergeyella zoohelcum CCUG 30536 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 777512 29 100.0 36 ............................. CGGGGTCAGTAGTATATTCATCTATCTTGTAGAGTA 777577 29 100.0 36 ............................. CCATAACCGTCTGCCTTCACTTGGTGGTTGGACTTA 777642 29 100.0 36 ............................. TTAGATAGAGACTTTAAGAGCTTCTTTGCGGACTCA 777707 29 82.8 0 ........................CTGTT | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 95.7 36 ATTCTAATCGCACCATAAGGAATTGAAAC # Left flank : CATAAGGAATTGAAACTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCTTTCGGAGTGGGTTCGGGAGGAAAAATAGAACAATTAAAAAACGGTGATTAAAATCAAATCTCGAACTACCCCAAAAAAAATCAAATGCTAAATGATGGAGGGCGAATAGTGGATGGCAATTAGCGAATAACGAGGAGTAAAACGATTCAAAACACGAAAACATTAAACTCCTATTATTCCCCAATTAATGCATGAAGTTATTAGTGGACTAGATTCATTCCATGAAAAAAAAGCCATCGTACTAAAATGTTTAGTACGATGGCTTTTTTTACGGGATATACAGGTTATTTCTTAGGTTTCCATTGGCTAAAGAAGTGTGCTACTTTATCTACATCGTAGCTTTTATCAGCCTCTAAGCTACCACTTTCCTGAATATGGAGTAGCTTCCCTGCAGCATCTATAACGATGAACACTGGATAACCATGTTTTTTTCCTGGGTCTCCATATTTGGCAAATACCGCTTCGTTTTTATTTTCTTTGGAATAATTCAGATGATA # Questionable array : NO Score: 8.65 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAATCGCACCATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //