Array 1 5292-13948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBYN010000031.1 Corynebacterium jeddahense strain JCB, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================== ================== 5292 27 86.2 111 T..A.......-.-............... TCGTTCTTGTGCGATCGGCTCACATCCCCGCGTCAGCGGGGTAGCATCGGTGACGCTCAAAAGTTGTCCGAAAAAGGTATGTGTGGCCTCTCTTCCCCCAGCTCGGGAAGG T [5307] 5431 29 100.0 32 ............................. CCCACCAAACACGCCCCTGACCGCACACCGGC 5492 29 96.6 32 ............................G GTGGCGCGCAAACAGCTGTCCGGGCAGGTCGC 5553 29 100.0 33 ............................. TTTGAGCTAGACGCGCAACCCCTTAGCGCGATA 5615 29 100.0 32 ............................. TCCACCTGGTCAAAAGTGAGGTCGTGGATCTC 5676 29 100.0 32 ............................. ATGCCCGGCGGCGAACCCTCGATGGACGGGCT 5737 29 100.0 32 ............................. ACTTTGAGTTTGCGCTTCTCCTTATCCCCGAC 5798 29 100.0 32 ............................. CGCCGGTGAGAATGTCCACCTGCTCCACATCC 5859 29 100.0 33 ............................. GCGGCGACAATCAGCGTCGAGCCGAGCGCAGCC 5921 29 100.0 32 ............................. GCGCTGTGGGAGTGTCCGTCGGCGGCGGGGTC 5982 29 100.0 32 ............................. CGAGGTGACGGGGTGTTACGAAAATGTGCCCC 6043 29 100.0 32 ............................. CTGGTAGTCGGCGGTCTTGTGGTGGACTTCGG 6104 29 100.0 32 ............................. TCGAGGTCGTGGATCTCTGGTTCACCAAACGG 6165 29 96.6 32 ............................G TCCATTCGGCTGGGGCCGTCATCGGTCAGGCT 6226 29 96.6 32 ............................G CCGTCGTCGAGGGTTTCGCGGGAGATGATCGC 6287 29 96.6 32 ............................T CGTCGGTTTGAGCGGCAGGAGCATGAGCTTGA 6348 29 100.0 32 ............................. AAGGACTGGCTGCTCGACCTCGAAACCAAAAA 6409 29 100.0 32 ............................. GTGTTACCTGCCTCGAGCGCGGCACCACCCAC 6470 29 96.6 32 ............................G TCGTCAACCCGGAGTGGGCCAGCGTGCCCGAC 6531 29 100.0 32 ............................. CCGTAAATGGCTTGGATGACGAAAGACCTCGC 6592 29 100.0 32 ............................. CGGCGGCGCGACACCCCAAGAAATCGCCAAAG 6653 29 100.0 32 ............................. TCCACCAGATCAACCAGCACATCGAATACCGA 6714 29 100.0 32 ............................. TACCGAGAGGCTCACCATGAGCATTGATTATG 6775 29 96.6 32 ............................T GTCCGCAGTGCTTGCAAAGTTCAACACCGGCC 6836 29 100.0 32 ............................. GCCATCGTCGACTTTCTGCAGAAACCCTTGTG 6897 29 96.6 32 ............................G CGAATCATCGACATGGTTGAAGCCGTGCTCGG 6958 29 96.6 32 ............................A TCCAGGTGATGCAGCGCATGGGCGACGCCAAA 7019 29 100.0 32 ............................. GCGCAGTCTGTCGCCCCGGTGAAGGAGGAGGC 7080 29 100.0 33 ............................. AACATGCCCACCTGCCCAACTGCTGCTGGGGGC 7142 29 100.0 32 ............................. GCATGGTCGCCAAGCGCGACCCGACCGCTGCA 7203 29 100.0 32 ............................. AAGGACTGGCTGCTCGACCTCGAAACCAAAAA 7264 29 100.0 32 ............................. TTGGCCTGGAACGTTTCAGCCTGGTCGAAGTC 7325 29 100.0 33 ............................. GCGCACCGGACGGCAAAGTGACCGCCCCGCCAG 7387 29 96.6 32 ..........T.................. TCCACCACCCCGCCAACCTTGCGGGCCTGCCA 7448 29 100.0 32 ............................. CGTCTCCTCACGCGACTCACGGACATACCCCT 7509 29 100.0 32 ............................. GCTATGTCGGCGTCGCAGGCCAGCATGGCGAT 7570 29 96.6 32 .............C............... GACGACTCCCGCGACGACGCTTCGGCCTTCTC 7631 29 100.0 32 ............................. CGGCAGTAGCTGCTGCCCCGCCGACAACAACT 7692 29 100.0 32 ............................. GCCTCGACACGCTGCTCGTGGACACCCTCGGC 7753 29 100.0 33 ............................. CCCGAGCGGGTCGCGGGTGGCTACATTGTCGGG 7815 29 96.6 32 ............................G TACAACGAGCAGGCGCTGGCGGCCATGGATGC 7876 29 100.0 32 ............................. TGAACTTCGACGACCCGGACGAAGTAGACGGC 7937 29 96.6 32 ............................G AGAGGTTTGACAGTGAGAGAGTTCACGTTCAC 7998 29 100.0 32 ............................. ACACTAGCTGCCCGGACTAGCGGACAGACAAA 8059 29 100.0 32 ............................. GCGCTATTGAAATCTGCGAGAAGAAACAGCGC 8120 29 100.0 32 ............................. TGGCGTGCCACCAACAACGGATTAGCCCTCGC 8181 29 96.6 33 ............................G TCTCAGGACGCGTCGAAAGATGCGACGGATGCA 8243 29 96.6 33 ............................T CGCAGTACCAGCCGCAGCCAAACCCACAGCCCA 8305 29 96.6 32 ............................G TTGTGGCCGAGGTGAAGAAGATCGTGGAGTTT 8366 29 100.0 32 ............................. ATCATGGCCTACACCCGTGGTCTGATCACCGC 8427 29 96.6 32 ............................G TTCCCTCGAGGGCGTACCCCGAGCAAACCAAG 8488 29 100.0 32 ............................. GCCGCCCGTGACGCGGCGGACAACCGAATGCA 8549 29 100.0 32 ............................. CCTCATTCCCCGTGGCGAACTTCCGGCCTTCC 8610 29 96.6 32 ............................G CCACCCTGGAAAACGTCTACACCTGGGACAAC 8671 29 96.6 32 ............................G ACTGCGCAGGGCTACGGCACCGGCACCATCCG 8732 29 96.6 32 ............................A GCGCAACAAGACCGTGAAGTCTGACTTCATTG 8793 29 100.0 32 ............................. CCCTGACCAGCTCGACCAGGCCACCATCGACC 8854 29 100.0 32 ............................. CCACTCTGACGCGGGAGGAGATCGCCCATGAG 8915 29 96.6 33 ............................G ACCCCGCGCACCACACCTGGTGGCAAGCAGCGC 8977 29 100.0 32 ............................. GGTGTAGACCGGCAGGGTGACGGGGCGGGCGG 9038 29 100.0 32 ............................. AAAGCCCTGCTGGATTCTGGCGTGAAGGTTTC 9099 29 100.0 32 ............................. AGTCGTCACAATTCGCCTCCTTTTGGGCATAA 9160 29 100.0 32 ............................. CAGCCGAACGCGATACGCGGCCCGGAACCCAA 9221 29 100.0 32 ............................. TTTTGCGCGTTGAACAACCTGTCAAACCCGAC 9282 29 100.0 32 ............................. CAACCCTGACGCGGGAGGAGATCGCCCATGAA 9343 29 100.0 32 ............................. GACCAGGCCGGTCTGTAACCGGAAGCCGGGAC 9404 29 100.0 32 ............................. GGGGTTGGACATTGCTCAAACCTCCTAGGTTG 9465 29 100.0 32 ............................. CCGGCGACACCATCTATGTAATCGAAACCGGA 9526 29 96.6 32 ............................G GACGGTGTCCTCACCCGCGCCGCCGCGAACGC 9587 29 100.0 32 ............................. AATCGCCTTCGCGGACGGCACGAACAATGCTC 9648 29 100.0 32 ............................. AGGGTGAAGAAGAAGGCCGGGGTGAACCCGGG 9709 29 100.0 32 ............................. ATTACGGTTCCGCCACTCCTATCTCCCACTCA 9770 29 100.0 32 ............................. AAGAACCATTTAAACAAGAACCAAAGGAACGA 9831 29 100.0 32 ............................. TCATCGACGTCTCCATCATCAACCGCCAGGTC 9892 29 96.6 32 ............................T CCACATCTCCGGCCCGTGATTCGTGCGGGCGT 9953 29 100.0 32 ............................. AGCACCCTGCGGTGGCAGATGATCATGTCGTG 10014 29 100.0 32 ............................. ACACCCAGGCCCTCGTCCACCAGCAGATCCAC 10075 29 96.6 32 ............................T AGACAAGGCCTGAATACGCCGCAGGACTAGAG 10136 29 96.6 32 ............................T AGACAAGGCCTGAATACGCCGCAGGACTAGAG 10197 29 100.0 33 ............................. CCCCTGCAGCGACCCAGACATCTTCGCCGTCAG 10259 29 100.0 32 ............................. CAGCGGCCCCAAGAACCCGTCACCATGATTCT 10320 29 100.0 32 ............................. ATGGTGGTGGTCTCTCTCTTTCGGGTGTCTGT 10381 29 100.0 32 ............................. TGCACTAGCTTCTGGTCGACAGCGTTGATCAC 10442 29 100.0 32 ............................. GCATTGGCCGACCTTGAGCGCCCCCTCCCCGG 10503 29 96.6 32 ............................G TAATCACAGCCGGTTCCAGGTCAAGCGCTTCC 10564 29 100.0 32 ............................. CCGGTCAACGCGGCCGCACCAGTGCCCTTCAC 10625 29 100.0 32 ............................. ATGGCCGCCGACAAGCTCGAAGCGGCCCGTGT 10686 29 100.0 32 ............................. GACGCGCGACGACGGATGGAGTCCTTCGGCAG 10747 29 96.6 32 ............................G GTGGCGGGTTGGGCGGTGCCGCGGTCTGACGA 10808 29 100.0 32 ............................. CTACTCGAAACGCCGGCGCACACGACGGCCTG 10869 29 100.0 32 ............................. CGTTTCGAGTAGACACGTTCACGCAGGCCGTC 10930 29 100.0 33 ............................. ATGTGCTGCGTCAACCGCGGATCGCCGTCGTGA 10992 29 100.0 32 ............................. GCCACCAGCCCGCACCGGCCACGGTTGTGCAC 11053 29 100.0 32 ............................. TCGTACGGTGGGGATACGGGCACCTACAAGAA 11114 29 100.0 32 ............................. AAGACCGCGATGGCCCACGTGCTGATCGTGAA 11175 29 100.0 32 ............................. CGGAACTCCCCGTTCGGCAGCAGTTCAAGGCC 11236 29 96.6 32 ............................G ACGACCCACGGTTCACAGGGACGGTTGGCATG 11297 29 100.0 32 ............................. TATCGACGGTGTCAAAGACAGAGGCGTACGCC 11358 29 100.0 32 ............................. CTCCCAGCCGAAAAGGAGACGACCAATGAGTG 11419 29 96.6 32 ............................G CGGCGAACCGCTTCTTCAACGCTCGCGGGGTC 11480 29 100.0 32 ............................. GACGGGAACGGCGGGTCGGTGAATTCGGGCAT 11541 29 100.0 33 ............................. ACGCGCCCCAGCACCGGGGCGAAGGAATGGCGA 11603 29 93.1 32 ........G...................T GACAACGCCACGTTGCCCGACACAGACCCAAG 11664 29 100.0 32 ............................. CCTTGAGTCTCGGCATAGAACACCGAGCCGAC 11725 29 96.6 32 ............................T CTTGTCCGGCGAGTCCGGGAACTGCTTATACA 11786 29 100.0 32 ............................. GGGGCGAGTTCTCCGCGCTGAATTCGGCCGGC 11847 29 100.0 32 ............................. CAACGCTGGCGTACCTGGGTGTGGCTGACCCG 11908 29 100.0 32 ............................. ACCAGCCTGCTGCGCACCCAAGACGTTGTGCA 11969 29 100.0 32 ............................. CTGCACGTGCCCGGGCTATGCCAGACGAACCG 12030 29 100.0 31 ............................. AAACTCAAGGCTGGGCCGACCCGCACCTAGT 12090 29 100.0 32 ............................. GTCAGCGCCTGCTGCACCGCATTCCCCAGAGT 12151 29 100.0 32 ............................. CCGCGTCCAGATCATGGGCGCGGGTCGGGATT 12212 29 100.0 32 ............................. CTCGACGTAGCCCATTGGCCTGAACCCGTCCG 12273 29 96.6 32 ............................G GGCGAGGGTGGCGACCCGTGCATGTTCTGCGA 12334 29 96.6 32 ............................T GACGGCGACTACATCAGCTGTATCGGCCTGGG 12395 29 100.0 32 ............................. CCAGCAGAATTACTTCACGACGTGTTTTCGGA 12456 29 96.6 32 ............................G CCCGCGTCAAGGCGTACCGGCACGACATGTCC 12517 29 93.1 32 .G..........................G CCCGCGTCAAGGCGTACGGGCACGACATGTCC 12578 29 100.0 32 ............................. GCCGGCCAGGCAATCACCACCGCAGCCCACAA 12639 29 100.0 32 ............................. GCCGGCCAGGCAATCACCACCGCAGCCCACAA 12700 29 100.0 32 ............................. CCCGCGTACCCGCCGAGAAAGCACTCGCGGAA 12761 29 100.0 32 ............................. CTTCGACGGGGTGGGCGTGCGCCACTTGCTCC 12822 29 100.0 32 ............................. AACCCATCAACCGGACAACCCGCAGCGCGACG 12883 29 100.0 32 ............................. GCGTCGGCGGCACGGCGCGGATCACCCAGCAC 12944 29 100.0 32 ............................. TCCAGCCCGTCAACATCGCCGACACGCGAAAG 13005 29 100.0 32 ............................. TACACCGCCGGCGAGGTCACCGGCAGCGTGGA 13066 29 100.0 32 ............................. TACACCGCCGGCGAGGTCACCGGCAGCGTGGA 13127 29 100.0 32 ............................. CCTCCCGCGGCCGTTGTGCAGGTCAAGCTCGG 13188 29 100.0 32 ............................. TCTCGCCCTGCACGGCACCACGCACCGACCAC 13249 29 93.1 32 ..T........................G. CCGTCCGCGCCTTGTTGCGCGGCGATACCGGC 13310 29 96.6 32 ............................G AAAAGTGAAGTGACGCATGGAACGTGGGAAAG 13371 29 96.6 32 ............................T CGGTGCGCGCGGCCGCGTTGCGGCGTGACGAC 13432 29 100.0 32 ............................. TCGAAGTGGTCACGGATGTTCGTGCCGTAGGT 13493 29 96.6 32 ............................G TCGAAGCATCGACCGGGCCAGGCGGCCCGGAG 13554 29 100.0 32 ............................. TGCAAACTCAAAACCCGACCGCCGAAGGCGGT 13615 29 96.6 32 ............................G AAAAGTGAAGTGACGCATGGAACGTGGGAAAG 13676 29 96.6 32 ............................G GGACTTGGTCGGCCAAATCCCCCTATTCGCAG 13737 29 96.6 32 ............................G GGCTCTTGGCACATCGCCCCGTCCCACACCTC 13798 29 93.1 32 .................A..........G AATGCGTGGCGTGGCAAGCGTCGCTTGAGATG 13859 29 96.6 32 ..T.......................... TGGACGGTATAGAAGAGGTCAAACTTGGGTAG 13920 28 79.3 0 ........A............G.-..GTG | G [13937] ========== ====== ====== ====== ============================= =============================================================================================================== ================== 141 29 98.6 33 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GGTTGAATACCAGATGCTCAAAACCACCCTTTTGCTCGAGTTGGGTTTGGAACTTTAAGCAGGCCTTGCCGCAATCGTGCACGCCTGCGAGCCATATGTAGAGGTCTCGAACTTGGTCGTCGCTGAGGCTTAGCCCCTCGGTTAGTCGACGCTTAATTGGTTCTGCGACCCACGTGTCATAAACCACCGCCGCCACCCCGGCCGTGTCCATGAGGTGCTGGGGAAGGCTGAGGTTACCGGATTCGTCCCCTGATTTCGCCCACATGGCGCGAGTTTGCTTACTGAATGGCGGGAAGTTGGTGGGCGTTCGAACAGAATGTTCGAACTGGGGGGTTTCGTGTCGACCCTCCATGCTCTGCTCCTATCGGTAGGTGGCTGGGCTGATAGTGGTTCTGCTGAAAAGGATAGCGTCCCTTGCGGGATGGGGCAACCCTAAATCCCACAATAACGAGTTTATTTTTCGTGGACTGGGGTAAGTTGCCGTGCTGCAATATGTTTAG # Right flank : GGCGGCGCGGCGGAACGCGGCGAGGTCCTCTTTGAGCATGCCGTGCGTGGAGTAGACGGCGAGGAACAGATGAGCATGCTGCCCGCCGAAACCACCCGCGTACGAGTGGAGGTCTCCTTGCGGTCCGGAAACGTCGCCGCAAGAAACGGCAGCGACGGCCTAAGCAGCCACAGCGCGATAATGAGCGACATCATTACCGAAAGCGGCGCCAGCGGCATGATCAGGTTCGCGGCGAGTGTGTTGAAGCCAGAGATCCAAAACGCTAGCCAGATCACGGCTTGCCGGCCGGCGAGCCCCAGGCAGATGACCGTCCCCAGCTGGGGGAGATGCTGAAACATCGAGCGCACGGCCCGTGCCGGGATAATCACGGACTCCCTAGCCACCTCCCGCAGCGCAGCGCCATTCATCGCAGAAGTGTAATCGGAGGTTCGTCGATACGCGGTTTGCTTTACGACGAGCCTTCGGTGTACATTCATCGAGGTTTCGCCCGCGACTGGCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //