Array 1 52305-52008 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYJ01000039.1 Phocaeicola sartorii strain NM22_B1 NODE_39_length_61880_cov_611.496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 52304 32 100.0 34 ................................ TGGTTGGCTCTTGTAAGATCCTTGATGATTGTCT 52238 32 100.0 34 ................................ ACGTCAACAGGCACACCGTCACCGTCAGCGTTTG 52172 32 100.0 35 ................................ ACACAACCGATGCAGTTGTTGTTATTGTAACCCAT 52105 32 96.9 33 .............................G.. GATGAATGCAGATAAGATACAAATTAGCATGGG 52040 32 75.0 0 ..T......T.....A.....AC..A..GG.. | C [52014] ========== ====== ====== ====== ================================ =================================== ================== 5 32 94.4 34 GTCGCACCTCATGTAGGTGCGTGGATTGAAAC # Left flank : GATGATTATCCGGTATTTATAATAAAATGATTTACAATTATGTACATTCTTGTGGCTTATGATGTGGATACTACGAGCAAAGAAGGGGCTCGTCGTTTACGGTGTGTGGCTAAAGCTTGTGTCGATTATGGACAAAGGGTACAGAACTCTGTCTTCGAGTGCGAGGTGACAGAAGCGCAATATTGTCTCTTGATAGAACGAATCAAGGATATTATTGATATGTCTCTTGACAGTGTTAGATTTTATATCCTCAGTAAAAACGAGAATAAAAGGGTCGAAGTGATAGGTGCTGAGACTGCTTATAAAGTTAATGATGCTCTTATTATATAATGTATGCGAATGTGGAGTATTGCAAAAAAGGTAGTATTTTCGCAATACTTAATAGTCAGTAGATTAGCTCGTTTATAAAGTCAGTCACTGTTATTAAGTTGAAATAAAAATAAAGATTCGCATGCAGATAGAGTTAATTCGTTGATTTATAATATGTTATTCGGTGTGGT # Right flank : TGGATATTATTTATATTCTTATAGCTTTTCAATTTCTTCTTGAAACAATTCTGTAGCTTGTGAAATAATATCAATGGCTACTTCTGATTTTTTCAAGTTATGGGCATTGTTCAGGTTGGCTTTTTTAGTCCTTTTTTCTACCTTTATTCAATCCCTTCTGCCCTTCCTTTTTCACGTTCAGTATTGATACTATCACGGAGAATAACAATGTTATCCAAGTGGCGGTAATAGCCGGCAAGCTTCTTCTTGGCCATGCTATCCAGTTTTAATCTCTCACGGGCCTCTCCAAGACCGGGGCTGTAGCAGTGGAAGGTATTTCTCGGTATTCAGGTAGTAGATCCATTCTTCCAGAGGGCTTCTGGCTACCTGATTGAAACCGTTCACTTTCAGGATATAGTATTCAGGATATAAGTTGCTGACCGTATCCGCCTTGAATGTCTGTTTCTGGAATAGGGTGAGTTCATGAAGATTATTAGTGTGGATTCCTGAATTCCGTCTTT # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 173528-172098 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYJ01000003.1 Phocaeicola sartorii strain NM22_B1 NODE_3_length_174449_cov_429.907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 173527 47 93.6 29 .....A...............GC........................ GATATTGCCGTACAGCATGGTCAGAAACT 173451 47 100.0 30 ............................................... AGTGGCAACTTAGACAGGTTGATTGTCCGC 173374 47 100.0 30 ............................................... AACACGACATAACAGCCCAACCCGAACCAG 173297 47 100.0 30 ............................................... GGCCGCCCATGACTACCCCAGCCAAGAAGC 173220 47 100.0 30 ............................................... CAAAACCTTTAATAGGAGCAGGAGCAGCGG 173143 47 100.0 30 ............................................... GATGGCAGAAAGATATGCGAAGACTTGTGC 173066 47 100.0 30 ............................................... TGCTCACAGACAATCTGATTCAGGACTTCA 172989 47 100.0 30 ............................................... AGATAGATATCACAGGAATGCTGTGGATTG 172912 47 100.0 30 ............................................... AGCCATTCAAAGGAGCAGCCCAAGACTTAT 172835 47 100.0 30 ............................................... ATAGAGCAAGAAAAAGAAATCAAAGAACTA 172758 47 100.0 30 ............................................... ATATTGCTAATGTTTGTGATATTGCTAATG 172681 47 100.0 29 ............................................... TAATATTATATTATATGCTAACACCATGT 172605 47 100.0 30 ............................................... TAACATTTATAATTTGTTGCTCGTTTATTC 172528 47 100.0 30 ............................................... TAATTATTTTTTTTGTTAGTGGTTTAATAA 172451 47 100.0 30 ............................................... AAACCTCACTAACCGGCAAGGTCTTGTATA 172374 47 100.0 30 ............................................... TCCGTATCTACCGTAGAGTCTGCCTGAGCA 172297 47 100.0 29 ............................................... CCGAAAAACCAGTCTTTGTTCCAATTAGC 172221 47 100.0 30 ............................................... AGAATCGGGGACATAAGGTACGGATATACG 172144 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : TACGGAAATAGCCCTTTCGCCTGCAAGCGTTTCAAGTGATGTTTGCCAAATTCAAGTATTTCAGCTCTGGTAATACACTTACTGAGCCTCATCAATATGATAAGCATGAATATATCTTCAAGTTTGTGTTTGAAATTTCCCCTGCTCGTTCTGCGGTATTCAGGGATTGAGGATACAAATATTTTCAAATGAATCATGAGGCTGCCACGAAGGCACTTAAAGTGTTTCTTTTTTAGTAGTATTATGTATAAAAAGTTGTATACCAATAAATAAATCATATTTTTGCTATTACAAGAACAAAGGAAGAAGACAATGCCAACATCATATTGCTATTAAATTCCGCCTATAAAAAATTAAAAAATAAACGATAAGAAGAAACACCTAAGGCGGTGCTTCAGTATCGCTGTGCGCGAATGTAAGGCTTTTTACAACAATAACAAGCGATGAACAATATTTCTTAAATGAAGCCGTGACCAACAAATACATAAATCACGTCCATA # Right flank : AGAATACATATTACAACCTAATTATCAATTAGTTAAGCATGTATTCAGAAATTAAAAACGAAATTGTTTTCTAATAAGAAATCCCGTTTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCCGGAGTAGTTACACCTTGTAATTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCACTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAACCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGCACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCTGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //