Array 1 12089-13947 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000127.1 Sphaerospermopsis reniformis strain NIES-1949 sequence127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 12089 23 100.0 55 ....................... TGTTTGGAACACTAGTGAAAATCCAGAAACAACCTGTGTTTGTTTCTAATTACCT 12167 23 100.0 48 ....................... CAAATTTTCATCCCGTATCCCTTCTATTACCTGCGTTTCTAATTACCT 12238 23 100.0 49 ....................... ACAACATAAGCGATGCCTCCAGTAGAAGCACTTACGTTTCTAATTACCT 12310 23 100.0 51 ....................... CAAAACGATGGGGTGAGCGTACTGTGATTATGCGGAAGTTTCTAATTACCT 12384 23 100.0 51 ....................... GCATAAAAATAAAATAGGTGGTATTATCAGTATTTAAGTTTCTAATTACCT 12458 23 100.0 50 ....................... AATCTTATTGATTTCCAATAATCGTAAAATCATGGAGTTTCTAATTACCT 12531 23 100.0 50 ....................... AACCAACTGTCATACCACCAAACACTCAGAAAAAATGTTTCTAATTACCT 12604 23 100.0 55 ....................... CCAAATTTATGGCTGAATATTTTCATTTTTCCTAATGCTTGGTTTCTAATTACCT 12682 23 100.0 54 ....................... CAATTGTTTGATTGGTCTAAAGCTGATGTTCTCGAGGTGGGTTTCTAATTACCT 12759 23 100.0 50 ....................... TAAATATAGAACAACTCATCCCCTCTTCTTTTTTTCGTTTCTAATTACCT 12832 23 100.0 49 ....................... GCAGTAAAGAATCAAAAGATAAATAAATGCTGTCAGTTTCTAATTACCT 12904 23 100.0 50 ....................... CTTTACAGACTGCTGGAGTAAAAGATACTTCATTGTGTTTCTAATTACCT 12977 23 100.0 52 ....................... AAACTTATCCGGGTTGTTTAACTGTGGGTAGTAGTCAGGTTTCTAATTACCT 13052 23 100.0 50 ....................... AGAAAAACTCTTGTTCTTGTTGTAGGTTCATGACTTGTTTCTAATTACCT 13125 23 100.0 49 ....................... GATAAGAGCGATCGCCAGAGCCTACTACTTTGATGGTTTCTAATTACCT 13197 23 100.0 49 ....................... AGTAATAGTGACCAAGAGAACCGCAGAACTGTGCCGTTTCTAATTACCT 13269 23 100.0 45 ....................... ATATGTGCTTGTTTTTTGTGCTTATTTCATAGTTTCTAATTACCT 13337 23 100.0 49 ....................... TATACTCCAATAAACTTTTCCCCTTCATAAGGAATGTTTCTAATTACCT 13409 23 100.0 52 ....................... CTTTAAAAATGGGCAAAAACTTTATAAAGTCTCTTGTTGTTTCTAATTACCT 13484 23 100.0 50 ....................... AATAGCTTTACCCAAATTAAAAACTTCCTGTGCAGCGTTTCTAATTACCT 13557 23 100.0 50 ....................... CCATCTGATGTCACAGAAATACCAGAGCCAATTTTTGTTTCTAATTACCT 13630 23 100.0 50 ....................... TTTAATAAATGATCAATCTTTGGTAAAATTGGTTTAGTTTCTAATTACCT 13703 23 100.0 51 ....................... TATATCCCATTCGTTTCAAGTTCATAATGTTGATCATGTTTCTAATTACCT 13777 23 100.0 52 ....................... GTCATCCTTTTGTACTTGGGCTTCGTAGCTGTCTAGCTGTTTCTAATTACCT 13852 23 100.0 50 ....................... AAACCTACTACACACCCCGCCTTAACATCTGAACACGTTTCTAATTACCT 13925 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================================= ================== 26 23 100.0 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCATAATTTACGACTTACCAGATAGCAAAGCTGCTAACAAACGCAGGACAAGATTACATAAAATGTTGGGTGGTTACGGAAAATGGACTCAATATAGTGTGTTTGAATGTTTTTTGACTGCGGTGCAGTTTGCGACACTGCAAACCAAGATAGAACGATTGATTAAATCTGAAGAGGATTCGATTAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATCACTTATGGTTCGGAAACCCCTAGACAAGAGCAAGCGATAATCATATAATTGATATATCAGCTTGAATTTTTGGCAAACCTAGAGCGGGGTCAAAAACCCTGGGGGGTCCGCCAAATCCCCAGAACCTTGATAATTGAATAGTTCCAGCGTTTCATCAGTTTCAGTTGGCGGTTAACCCGAAGCCTGAAATGAGGTTTTTTCAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : CATATAAAACACAGGAGGCGATCGCACGGAAAAAATAGCTACAACTTGGGCAACAATATTAGCAAGAAGGGAAATGGGAGAATCATTACAAATCATAGCTCAAGATTTAGAAATACCATACACCACAGTTAAAACTTATGTTAAATTAGCACCACGGGCGCTGAAAGATAACCAGAGCAATATTTAACATGATTATGTATTTGGTGAAATTAGCGATCGCTTTTTCCAATATGTGAATTATATTAAATTAGCGATCGCCAAAAAAGATTAAATATTAAATTTAATCTTGTTTATTTTGAGGAGTAAATTAATAGTGAAAGCAAAAATCAGAGATACAGAAATCTATTTTGATATTGACGGTTGTGGGTTAGCAGTTGAAGAACAGGGAATACGTGAAAAACCAGTTGCTTTCATCATTCATGGTGGACCTGGAGTAGACCACACCAGTTATAAACCTTGTTTTTCTCCCCTCAGTCATCACCTACAAATGGTCTATTTTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5477-4654 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000013.1 Sphaerospermopsis reniformis strain NIES-1949 sequence013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 5476 36 100.0 36 .................................... TCCATAAAAGGGCGCTTCTATGTTAGTTAATCCCAC 5404 36 100.0 37 .................................... AGCACCATCATGGCTGTTTTTCGGTCGTACCATTGGG 5331 36 100.0 34 .................................... GTTTAGATAGAACTCAACTATTTAGAATAGTTAA 5261 36 100.0 35 .................................... TCAATCCAGATAAGACCCGCTTTAGTCGCTTGAGA 5190 36 100.0 36 .................................... CTAGAGACAAGTATGGATAATGAAGAAAAAGATTTC 5118 36 100.0 34 .................................... CGTTCGGAAATTAATCTTCTTTCCTCCTGTGCCA 5048 36 100.0 35 .................................... CCAAAAATCAGTTTTACCTCAGTCCACTCCCTTTA 4977 36 100.0 36 .................................... TTTTTTTACTAATTTAATTGGCGAGGATCTACCACG 4905 36 100.0 37 .................................... GCTAGAAGTGCTTAATCCTCTTATTTAGGAACATTGC 4832 36 100.0 34 .................................... CATTGCGGTAGATATGGACTAAATCTGCCAACTC 4762 36 100.0 37 .................................... TGCTTTAATGTGCATTAACGTTGCGGACTTCACAGAG 4689 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 100.0 36 TTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Left flank : TCAATGGTTGCCTTGGATGAAGATGGGTGAACAACCAGGACAACTTATATATAGTGCTATTGGTGGCAAGGTGGGCGGTTTTACAGAGTTACCCCCACTGTTACAAGCGGAAATTAATAACCGTGTGCCTTTGTATAAGCAAGCGCCGAATGCTTTTATGGAAGGGGAAGATATGACTTCTTGGTTATATTTTCAGAAGCATTTTTCTGATTATTTGGCTGGGGAAGTTTTTCCTTTACCAGCAGCGGAGGAAGGTTAGTTTGTAGTCCGAAATGCGCGGATGGGTGGGTGTAAATTTTGAGGTGTTGAAAAAAATGCCTGGATCTCTCTCTCTGCAAGGATTGGGAGTTATTTGTGTAGAACAACCACCCGCGCACCTTACCCTGTCTTGGTTTCAACGTTTTTCCCTCTTGACGCAATTCCTGAAATGGACTATCATTAGAACATCCGCGCAACCGAATCTTGAAAACTACATATATCTAGGCTTCCAGGATGCCGCG # Right flank : TGGAGATAGTACCCAAAATCAATCTATAAAATTGCAAAGTTGCAACATGAAATAATTGTGATGAAGATACAATCAAGCAACTCCATAGTCTGTATATTCCCGCATTTCAGGAGCTTGAAAACCTAAAATAATATCTTCCTTTGCAACTCCTCGCGCTACAAGTTCTTCAGCCACCATCATTTCCGTCATATTTTGCTCAATCCAGATTTTTCCCTCTTTAATATCCAAATGTAAAACACAACCATAGACACGCCGATGGCCATCCCATCCAACATTCATGACTTGGTAATGATCTTGTTTAGTATCAAAAACAGTGTAACAATCAATCTTACCATTGGCTATTGGGATGGCAGCATAAGCAGTCAACAACGACTGAATGATATTGCGATAAGATGCTATGGTATCCATTGTAAAATTACCTCTTCAATTGGGTCATAAATAATTTGTTTAATCTGATATCTCTCTATTGAAATTTGGGCAAATTCCCGCTTAAAAAAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 12466-11083 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000130.1 Sphaerospermopsis reniformis strain NIES-1949 sequence130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 12465 36 100.0 37 .................................... TAAATAAGAAATAGTTTCATCTCTGAAGTGGCACTCG 12392 36 100.0 38 .................................... CAAGAGCTAACCCAGCACCCATCTTTTTCTGACAATTT 12318 36 100.0 42 .................................... TTTGCCATTAGACTGGCTGGAATTGTGGGACTGTTTCAGTTA 12240 36 100.0 40 .................................... CCCAAATGTCGCCCAATCAATTACTTCCAGGGATGTACAA 12164 36 100.0 38 .................................... GCTAAGTCTTTGTTAACTGTCCAAGTGATGTCGTTTAA 12090 36 100.0 43 .................................... TCCCCTCCTAAACCAACCAGCTTATGGTAAGCAAAAAGAAGGA 12011 36 100.0 41 .................................... ACCAGGGTCTAAACCTGGAAAGTCTTCCAGGGCGTCTTCGC 11934 36 100.0 37 .................................... TTCCGGTAGCGGCTGGAGCTCATAATTCCCAAGGCAA 11861 36 100.0 42 .................................... TTTGGTCTCCCCAGGTTCCATTTGACTCTGCCACTACCTTTC 11783 36 100.0 42 .................................... TTTATCTTCTGCTGGAAGCTTTATACTTAGAAAGTTACTGGG 11705 36 100.0 35 .................................... GTCGTATTCTGCCTCTGAGAGGCTCGTACCTTGAG 11634 36 100.0 38 .................................... GATTCAATAACTAACATGATCGACCTTCTTGTGGTACG 11560 36 100.0 34 .................................... ACATAAACCCTAGCCACTTGGATTAGTCGGATAG 11490 36 100.0 42 .................................... TTTGGTGAAACAGAAAATGAGTAACACAAAAATCATCTACCA 11412 36 100.0 37 .................................... TATAACCATTTAAAATCAAATGGTTATACATAAACTT 11339 36 100.0 40 .................................... ATCTGATTGTCCATGTGCGATCGCACTGTTTCTTAGTAGC 11263 36 100.0 36 .................................... ATCCCAGATTCATCCACTAAATCCGACGGTTTAAAC 11191 36 100.0 37 .................................... TTTATCGAAAAGCAGGATATCTAGAAAACACGCAGAA 11118 36 75.0 0 ..................T.....C.AC..AACC.A | ========== ====== ====== ====== ==================================== =========================================== ================== 19 36 98.7 39 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TTGCTGATGTTTGTGTTATGTTTTTGTATGTGATTGCTTACGATATTCCTGATGATAAACGACGGAAAAAGATAGCTGATGTATTGGAAGGATATGGACAGCGTGTACAGTATTCTGTGTTTGAATGTCAGTTAAATACAGAGAAGTACAATGATTTACGTCGTCGGTTAAGGAAGATTGTTAAGTTAGAGGAGGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTCTTTCCCAGGTGGAAGCGTGGGGAGTGGGGATACCAGTGATTGAAACGCCGAGTTCGATTATTGTCTAGTTGTTAGGGAGGCGCGGCGTTAGCCGAAGGTCAGGTAAAATGGCTGAGATGTTGATTATTCCGTTGCGAGCTTCGGTTGCTTGCTGGGTAAGGGTTATGGGGATTTTTGAACGCTGTGGGAAGGCAATCTGTCCACCTTTTTTCGTGACCTTCGGAAACCGCCTCTGGACTCCTTGCACTGTCTGGGTTTAAAATGGAGGG # Right flank : TTACCGTAGGGGTTTAGCACTGCTGAACCCCTACTTAATAACATTTGAGTATCAACAAATCGGCATAAAAATACACAATTTGCAATTAATGTCAAAAAATAAACAATATTTTTAATTAAACTAAATAAACACCTCAAAGCCTTATACACAAAGGATTTCAAGGTGATTTATATTGAAAATTAAATATTGTCAATCAATAGACAAATACTAAATCCCGTCATTACAATATAAATATTGGCTACACAGGGGAATCACCGATGACAGCAGAATATTGGCGGGCTAAGATTTGGGGGTTACTGCATGACCCTATACTGAAGGCATTACATAACAATAGCGGACGGGGTAAAAATAGCTTCTATGAACAACTAGAAGTTATGAAACCTTGGGTTGAGACAGGTAAAACCCCAGATCAATCAGGTGGTAAAGTATTAAAAAATATCCTCTTAGCGGATTATATAGCCTCAGCCAGTGATAGGTCAGTCCTGGGTAGCGTCACAGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 28736-30313 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000015.1 Sphaerospermopsis reniformis strain NIES-1949 sequence015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 28736 37 100.0 33 ..................................... TTAATATTTTAATTCTGACTGCTCTTGATCCTT 28806 37 97.3 41 ................................T.... ATTTTAACATGATTTAGATACAATAGCTAAAACATTTCAAG 28884 37 100.0 34 ..................................... ACATAACACTTTAGAATAAGGACATTTTGCCGAT 28955 37 100.0 35 ..................................... ATTCGCGATAAATGGCTAGAACAAATTGAGGAATC 29027 37 100.0 33 ..................................... TTTTACTATCTGGGGATGTCCTACTAATTCTGA 29097 37 100.0 39 ..................................... ACTTTTTTCATTTCTTTAGCACTGCCCTCTTTATCAGTG 29173 37 100.0 42 ..................................... GTTGATATCCCGACGTACCATACACGACTTGCAGAATCTAAA 29252 37 100.0 44 ..................................... CTTGTCTAAATACTGTGAATAAAATTTCCAAGAAATATACTGAG 29333 37 100.0 38 ..................................... CCAATATTTAGCAATCAATTGATTAATAATTCGTTGAG 29408 37 100.0 35 ..................................... CTTAATCAGATAGAAAGCGGTTGGCTCTGTAGCAG 29480 37 100.0 41 ..................................... TTTGATAGAGAAAGATTGACATTACATTGTGTGATTACAAC 29558 37 100.0 36 ..................................... GTAAACTCTTGGGAGGTGAAACAACCTCAGAAAGAG 29631 37 100.0 36 ..................................... ACTTTCTTCAATTCGCTTCTGTACTTGGTTTGCATC 29704 37 100.0 33 ..................................... AAGTTTTGTATAAGTAGAAACGAAAATACCCAG 29774 37 100.0 37 ..................................... TGAATTGAGAATGAATAGCTTTTTCTTGGTTGTTGGT 29848 37 100.0 35 ..................................... ATATATAAAACTTACTTATATTTTGTATTGACAAA 29920 37 100.0 33 ..................................... AACAGATACATAAGCCCAAAACCTAGCGCCATA 29990 37 100.0 33 ..................................... AAGACTGGATGGACTTTAACAAAGACAACATTG 30060 37 97.3 34 .A................................... CATCTGCCATATACTTAGTAAGCACGATACTTAC 30131 37 100.0 34 ..................................... CCGTTCTAATATCCCTAATAAGTTACAAACAGAA 30202 37 100.0 38 ..................................... AAAAATACTATGCACAAGTACACAATGGTTAACTAGTA 30277 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 22 37 99.8 36 GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Left flank : CTGGTTGTGTGAATGAACGGGATTTAGCTTTATTTTGGCAAGCTTTGATTAATGCTTGGGAGTTTGATCGTTCTTCAGCACGGGGTTTTATGGCTTGTCGTGGTTTGTATGTTTTTACTCATGCCAGTAAATATGGTAATGCTCCCGTTCATGAGTTATTTGATAAACTGCAAATTAAGTCTAATGTTGATGTACCCCGCAGTTTTGCTGATTATCAGGTTGACTTGGATGAGGTGTTACCTGATGGTGTGACTTTGACAAAGTTGGCTTGAAAATGCGCGGATGGGTGGGTGTTAAGTCGGAGTGATTATGACTAAGCTGGAAACTCTTACACTGTCTAGTTTTTATCCGTTGGGTGTTCTCAACCACCCGCGCACCTTACGCTGTAAGGGTTTCGGCGTTTTTCGCTCTTGTGCTATTCTCTGGAATCGGGTATTATTTTGGCATCCGCGCAAATCGTTGTGGAAATGTCCTATTTCTAAGGGTTTGCGCGATCGGCA # Right flank : CATTGAGGATTGAAACTAAACTAAAAGATAATGATTTTCACAATAAGAAACTACACAGTAATTGCAGATTGACATGACAAAAACCCATACCACTCATCTAAACCCACACCAGTAGTAGCAGAAACCTGAAAAATTTGTATTTTTGGGTTTACCTGTTTTGCATATTCAATACATTTTTCTACATCAAACTGCAAATAGGGTAACAAATCAATTTTTGTAATAATCATAATGTCACTAGCGCGGAAAATATGAGGGTATTTAATTGGTTTATCCTCTCCTTCCGTCACCGACAAAATTACAACCTTAGCCTGTTCACCTAAATCAAATAAAGCCGGACAAACTAAATTACCCACATTTTCAATCATCACCACAGAATTTAATGGGGGGTTAAGTTCCTGTAAACCCTTTTCTATCATCGAAGCATCTAAATGACAGCCTGTTCCGGTGTTAATTTGCACCACTTTACAGCCTGTAGATTTAATTCTTTCTGCATCATTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 27600-26241 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000017.1 Sphaerospermopsis reniformis strain NIES-1949 sequence017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 27599 23 100.0 53 ....................... ATCTATCCCCCAAAAGATTTAGACGATACAGTAGATAAAGTTTCTGATTACCT 27523 23 100.0 51 ....................... AAGAATTATTAAATTCACTAAAACAAGAACTTCCTAAGTTTCTGATTACCT 27449 23 100.0 51 ....................... AATATCCACCATAATCTCGTGCTCCTGTAATTTCAAGGTTTCTGATTACCT 27375 23 100.0 50 ....................... TTTTCTAAAGCAGTCTCAAGAGCCACTTTCTCAGCTGTTTCTGATTACCT 27302 23 100.0 48 ....................... TAACAGCTTTCGCCCTTTTCTTAGAAAAAAAGAAGTTTCTGATTACCT 27231 23 100.0 47 ....................... CAAAAGGGTCAACTTGCTAGTTTCTTACATATTGTTTCTGATTACCT 27161 23 100.0 57 ....................... CCACAAAGCGTAGTTTGATGTTAACTGCAGAGTCTCCTTCTAGGTTTCTGATTACCT 27081 23 100.0 48 ....................... TTCCCACTACCTTGATTACCAATTAACCATAGGGGTTTCTGATTACCT 27010 23 100.0 54 ....................... GACAAGGTTGCAGTTGTCAACGCCAAGCTGAATCGCTCCGGTTTCTGATTACCT 26933 23 100.0 50 ....................... AGTATAACGTCTAACAACAAAACGCTTTTCAATCTTGTTTCTGATTACCT 26860 23 100.0 53 ....................... ATTTTCCAACTTCTTTATGGTGACCGCGTGACAACCGCAGTTTCTGATTACCT 26784 23 100.0 50 ....................... ACGGTGGTGACGTTGGTGACACCCCCTGAAACCGTTGTTTCTGATTACCT 26711 23 100.0 48 ....................... GGGTTTATAGACTTTATTCTTAACATTGACAAATGTTTCTGATTACCT 26640 23 100.0 50 ....................... ACTATTGCTTTAATTTCTTTCTCTTGTATTTGTTCTGTTTCTGATTACCT 26567 23 100.0 51 ....................... TGAAAATATGGGAATCGACAGCATTACGCTATATGATGTTTCTGATTACCT 26493 23 100.0 49 ....................... TTTCCTCTTGAACTTTAGATTTATTATCTTTCCTAGTTTCTGATTACCT 26421 23 100.0 56 ....................... CTGCATCTAACACTTCTAATTCTTTCTAAATAACAGAATTAGGTTTCTGATTACCT 26342 23 100.0 56 ....................... AGAGATGGTCAACGTAACTCCTACTAACATCCATTGGTTGAAGTTTCTGATTACCT 26263 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================= ================== 19 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTTAGCGGATAAACTGCATAATGCTAGGTCTTTACTAGCAGATTGGCAACAAAGGGGAGATATAATTTGGCATCACTTTAGTTGTGGTAAGGAGAAAACTTTGTGGTTTTACCAATCATTGCTGGAGGTTTATCAACAGACTGGTTCTGATGTGATGACACAAGAATTAGAACGAGTGATCAAAGAACTATTTGAGTAATAATCTGTTTGAAATTGTAAATTTCAGCTTGATAATTCTTAACCGAATTTAGCTTGACAGGTAAAGCAACCAATTTTACCCTTAAATAAGGATAAATTTGGCAAACCGAAGCGGGGGCAAAAACCCCAGGGGGTCCGCCAAATCGACAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCGGTTCACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAATTCGTCTCTAGACTCCGGTTCTAGACTATGTTTCAAAGCGCCGGGGTTTCTGATTACCT # Right flank : CTTTGACAAACCTAACATCTGGCTTGTGACGAACCTATTGATTAATTTTAAATATTATTGAGGAAACCCCATGAAACCCATTTTCAGAACCACAACATTAGCAGTTATTACAGTATTATCATTGAGTTGGCATAATCAAGGATTAGCACAACAAACACAAGGACAAAAGTTAGTAGATTCCATACAGTCTGTAGCACAAGTCAAACGTCAACTCAAAGAGCTTTTCACCAACTTAAATCAATGCGGTACAGGTGGTTGTTTTAATATGATAACTACCAATATCTGTGAATTAGTTGGAGCATTGGATGTCAAATTAGATGGTAAAATTATTGGTGAAATGTCTGGTTTTAGTGACACAAAACTCCCTATTTCAGCATCGGACTTAAAATTGATGAAAAAAATATTTAGTCAGTGCAAACCCACTAATTATCAATATTGGAAATGGGAAACTGTACTGCACGTTGGCTATGATCCCACACCCCAAATAGACAAAGAAATCC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7000-8254 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000171.1 Sphaerospermopsis reniformis strain NIES-1949 sequence171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 7000 36 100.0 39 .................................... TGGTGTTCGTAGCAAACCCCCCACCAAGAGGTATGTTCT 7075 36 100.0 44 .................................... CCTATCAACGAGGTGCGGGAGATTTACTCTTCTAAACCAGATGT 7155 36 100.0 50 .................................... CCACCTATTGCACCACCACCAGTTGCAGCACCAGCTATTAGACCTAGATA 7241 36 100.0 37 .................................... CTTCTACTTTATGTATGCTAAGGCTGTTACCATTCAG 7314 36 100.0 39 .................................... AAACTTTTCCTCCAAAAGAAAAGTTAAGCTGGTCGTCCA 7389 36 100.0 45 .................................... CCAACTGCTACCTACCTGATGTATAACCAGAACGCTCGTGAGATG 7470 36 100.0 35 .................................... CTAATTCTTCCGGCATTTCCCGGAAATCACAAATT 7541 36 100.0 35 .................................... CATCTTAGAGTTAGCAGAAGAGGTACCCCCTGACG 7612 36 100.0 39 .................................... TTACCCACTTAAACACATGGTTGACAAACAATCTAAAGA 7687 36 100.0 44 .................................... TTGTACTGATACTTTCAAAATCACCAGAATGTGATTACATTTAC 7767 36 100.0 37 .................................... AGCAGAAGCTAAACTGCCACCAGGATAAATCTGAAGA 7840 36 100.0 46 .................................... TTCTCCTCAAGTTGAAGTGGCATGAGGATAGCGTTCGGTTTTTATT 7922 36 100.0 36 .................................... TTGAGGGTGAGGCAGAGGCTAAGGAGTTGGCTAGAA 7994 36 100.0 35 .................................... AGAATAACAATAGAAATGATAGAAGAGGAGGTTCA 8065 36 100.0 49 .................................... TATAAACATTATCTAATAACACCCGCAGAGCCAGAGTACAGAGAGTTTA 8150 36 100.0 33 .................................... ATCAGACACAATAACCCAGATAACATCTATATT 8219 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 17 36 100.0 40 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Left flank : ATGAAGATATTACACAATCTTTTTTCGGGAAAATTCAACAACGTTCTGTTATTGAATTACACCGAGGTACTACCCTTGTTGGACCCCACAGGGATGAGTTAGAATTAATTATTAATCAAACTCCTGCTCGTCAATATGGTTCTCAAGGTCAACAACGTACTTTAGTTTTAGCTTTAAAATTAGCAGAATTACAATTAATTGAAGAAGTCGTGAATGAAGCTCCTTTACTTTTATTAGATGATGTTTTAGCAGAATTAGATTTATCCCGTCAAAATCAATTACTTGATGCTATTCAAGATCGGTTTCAGACTTTAATTACTACTACTCATTTGGGTGCTTTTGACTCTCAATGGTTAAAATCTTCTCAGGTTCTCTTTGTCAAATCAGGAGAAATAGAGTTTCCTGAAAAAGTCTTTTCGTGAGGGAGTTAGGAGTTCCAGAAATTTTTTTATTTTGAAATTGTCTAAATATCAACAAGGTGCAAGCTTTTTTAGCTTTAC # Right flank : CCCCTCCATTTTAAACCCTTACCCAGTAAAGTGTCCAGAGGCACTTTCCGAAGGTCAGGAAAAAAAGTGGTGAAACAACTAACCAACAGCGGTAAAAAATCCCTGAAACCGTTACCCAGTAAGCGACCGAAGTTCGCAACGAAAAAATCAATATTTCAGCCATTTTACCTGACCTTCGGAAAAACTACACAATAATCAAGGAGTCAGAAGTTCCAGGAGTTCCTCACTGACTACTTCAAACCTTTGATTTATCAAGGTTTTAGTTTTATTCAGCAACCCCTATTGAGCTAAAAACTGTATTATATCTTACTTGAATTAGTAATGTAATTGTAAAAACTCAATTTTTAATAATATTTATTTATATAAGATATTTATATTTATTGCTTTGAAATAGTGTATTAAAGAAATAATCAAAAATGTAGCGTTTGTATCTTACCATAAAAACAGTAGGTCGATAATTGAAAAATAATACGTAAAACTTGCACAAATGACACCTAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 7067-6882 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000182.1 Sphaerospermopsis reniformis strain NIES-1949 sequence182, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 7066 30 86.7 45 AC.T.C........................ TTAAAATATTGCCAACCTCTGCTTTCATTGGCTAATAAATTGCAA 6991 29 96.7 51 ...........-.................. AAATTATTTTCTCTGTCTAATTCCTTTTGATGGTTCAAATACAAATTGCAA 6911 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================== ================== 3 30 94.5 48 TTCAAATTACTCCCTATTAGGGATTGAAAC # Left flank : GACTTCTACTCAAGCGTTAAATAATAGTACCTTGCCTTATGTTGTGCAGTTGGCTAATTTGGGTGTGAAAGCTTTAGAAGTTAACCCCGCTTTAGGTAAAGGTTTGAATGTGAAAAATCATCGTTTAGTACATCCCGCTGTACAAGAGGTTTTTCCTGACTTGGGTAAATAGGTGACAGGTGACTGGTGACTGGTGACAGATATAAGTTTTTTGAGAGTTTGCCTGTTGCTGTTGTTCTTGTGTTTGCGCGAGGGGGTGGGTGTAAAAAATGGATGTTGTCAAAAAATGCCTGTATCTCTTGATAGGCTTGACTTTGAGGCTATTCATGTTCTCTAGACCCTCGCGCACCTTACACAGACTGGGTTTCAGCCTCCTGCTATTGCAATTCAAATTAAGTAAGTCGGCTTGAAAAAACCGAGGTATGTTACAAAAGGTAAATCCCCTGAAAGTCTCTTCCCTCTTGCCTTTTGCCTTGCCATAACGATAAATTTTAACGCCT # Right flank : CACCTATTGCATACATTTCCTTGCCCCTATTTTTTTACCCGCTTATTTTCTCAAATTATTGCCACATCTCATCTTCAACCGTCTTGTCACCCGTTAAGGATGCTCCCATTAATTCTGGAAGGTTCTGCTTTCAATAATAGCAGATGCAGAGCCTCTATGATGGCATTCCTAGTCGGATACTGGGAAAGAGAGACGAGAGAACGGCTAAAGGCGAAATATAAGCAATTTTTATCTATTTTTTTATATTTCTCTTGTTAATGAATTGATAAAAATTTGGTTACAAGAGCAAAAATTAAGAGATGATAGAGTTGATTGTATTAAAGGAAGATAATTGTCACCATGAATCAATTATTAGATGAATCACTGTCTTTGCAAGTTGCCGAAAGTATCAAAAGTAAAGCGAAAAAACCTTTTGATAATGCTTATAAAGCAGTTTTAGCAACCGAAGGTGCAAAGTATGTTCAAGGTTTTATAGTTTTTAGTGGTCATCCATTCAAACC # Questionable array : NO Score: 6.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:-1.5, 6:0.25, 7:-0.29, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAAATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10631-9829 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000174.1 Sphaerospermopsis reniformis strain NIES-1949 sequence174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 10630 37 100.0 42 ..................................... ACTCCTCTCTCGCCGTTTGCTACTTTGTTATCATCAGTTCCG 10551 37 100.0 35 ..................................... GACATAAATTCTTTTGCTCTGCCCAGGTCTTCATT 10479 37 100.0 44 ..................................... CTAGCTTTCTCGAAGTGAGCTTGGAGGTTTTCTTGCTCCTCTTG 10398 37 100.0 43 ..................................... GCCTATGACCATCAGCCAGGAGTACAGCATATCTGACTTGATG 10318 37 100.0 39 ..................................... GTTATGCTCCTGAACCCAAGCGTACATTTCCCTACTGCG 10242 37 100.0 38 ..................................... TCTCTATCTTGAATACAAGGGGATTGACTAGAGCCGTA 10167 37 100.0 37 ..................................... CCTGGGAGCTGGGAAGCTCCGTCAAGAGCGTTGAACC 10093 37 100.0 41 ..................................... CCATTAGGGGCTACGGTGTATAGACGGCTGTACTCGCCATA 10015 37 100.0 40 ..................................... AATTTTATGCAATACCTATTTTAACTACCTGGGGAGTTAC 9938 37 97.3 36 A.................................... AACAAAATCTTAATCTGATGCAAACCATTAAAAGTT 9865 36 94.6 0 ..........-...G...................... | C [9851] ========== ====== ====== ====== ===================================== ============================================ ================== 11 37 99.3 40 GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAAC # Left flank : CCTGGGACAAAAATTGATAATTTATCGTCCGAATGCCGATGCTTCCAGCACACTTCGCGAACGCCCGTACAGGAGTCAGGAGTCAGTGGTTTGACTTTGCTTTTCCCTTCTGCCTCCTGCTTTGTCATAACGACAATTTTTCACACCCACTTGGTTAACTTTTGTAAATTTGAGAACTGGGGAAAATACAGCATTTTAACTACCAATATCCTTAATATTTCGTTGTTTGCGGGATTGTAACGGAATGTTAAGAACTTTGATAAGTTTGGCGCAAGCAGCTATAAAGATTTACATTTAGTAATGTTCTGTGATTTTGAGAAAATGTTGGTTTTTTGGGTTGACATCTTGGAGTTTTTCGGTTAAATTATTTTTATTGGCTGGAAACAGCAATCTGTACCAAGAAAATTGAATACTGACTTTGCTTGTTACATCTTTGTTTCCGTAGCTTGGCGCAAATGCTCTTTGAAAGCTAAATGTAACAAGGTTTCCGTGAGTATAGG # Right flank : ATTTGATAAGCTTTTTAAATATGAAATTTGCCAAAAAAGTTTTGCATCCTCATTTTCGCAATAAACCCTAGCCATTCTCAAGATTATTGCTATAAATTCTCAACTATTTAACGAGTTTTGGTTTTTTCAGCCATTGATATTGACATACACTTTTTTTCTGGTATGATATGTGTATGATCCAAGGGAGTTATATATCTTCCAATAACCAGCAGGAATTATTTTCTAACTACACTTCTTTTAATACACTTCCTAAACTATTAACTAACTTATTAATATGCTCTTTTTCATGGGTTGCCATAATTGTCACCCTAATACGACTTGTTGGTACTGTGGGAGGACGGATAGCAGGAGCAAAAATACCCGCTTCTTTTAGTTTCTTACCTGCTGTTAAAGCTGTAGCTGCATCAGGTAATTGAAAACAGAAGATCGGAGATTGGGAAGGTAAGATTTTTAAGTTAGGTGTTAAGTTAGGTGTTAACTTAGTTAAATTTTCTGTAACC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 6185-7307 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000214.1 Sphaerospermopsis reniformis strain NIES-1949 sequence214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 6185 23 100.0 54 ....................... ATCAGCATATTGTTATCAGCATATTGTTAAAGTTAAAAAAGTTTCCACATAACT 6262 23 100.0 55 ....................... CTGGGTTGCGATAAGGTAAGCAAGTTCGATTGCGCGACGATGTTTCCACATAACT 6340 23 100.0 56 ....................... AAGGTCAAACGCAAGGAAACTATTTCTGAGGTTGAAGTTAATGTTTCCACATAACT 6419 23 100.0 51 ....................... AAGATTACTACAGCCCCATCAAGGCCACAGTAATAGTGTTTCCACATAACT 6493 23 100.0 48 ....................... ATAATCTTCAGAGTGATATCCAACCTGTAGCAAGGTTTCCACATAACT 6564 23 100.0 50 ....................... ATTCCATCATGGCTAGACTGAGCAATGGGGAATTTGGTTTCCACATAACT 6637 23 100.0 50 ....................... CTGAAAAATTAGACAGACAACGCGCAATCCAAAGTCGTTTCCACATAACT 6710 23 100.0 51 ....................... TTATCAGGTAACAGTTTGAGGTCTAAAGTGTAATTTTGTTTCCACATAACT 6784 23 100.0 53 ....................... TAGAATCACCTCATCATGTACTATTGCACTTAATCTGAGGTTTCCACATAACT 6860 23 100.0 54 ....................... GCCCAATTTAATCCATCCTCATCTAGCAGTTCGACGTTTCGTTTCCACATAACT 6937 23 100.0 51 ....................... ACTATTCTGTTATCGGTTCAGACGTAATCATAAAACGGTTTCCACATAACT 7011 23 100.0 49 ....................... CATTTACAATGCTTCCCAATGTAGTGGAAGAAATCGTTTCCACATAACT 7083 23 100.0 49 ....................... CACACATTGTAATCATATTGTGCTACAAAGTGGATGTTTCCACATAACT 7155 23 100.0 52 ....................... AAGAAAGATCATCATTTACTAAGGGAACTTCCATCACTGTTTCCACATAACT 7230 23 100.0 32 ....................... AAGTGCGATCGCCAAAAAAACCAATGAAAATA Deletion [7285] 7285 23 87.0 0 .......A..........A...G | ========== ====== ====== ====== ======================= ======================================================== ================== 16 23 99.2 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTCATAATTTACGACTTACCAGATAGCAAAGCTGCTAACAAACGCAGGACAAGATTACATAAAATGTTGGGTGGTTACGGGAAATGGACGCAATATAGTGTATTTGAATGTTTTTTAACTGCGGTGCAGTTTGCGACACTACAAACCAAGATAGAACGATTGATTAAATCTGAAGAGGATTCGATTAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATTACTTATGGTTCGGAAACCCCTAGACAAGAGCAAGCTATAATCATATAATTGATACATGAGCTTGAATTTTTGGCAAACCGAAGCGGGGGCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTAAATACTTTCAGCTTTTTGTTAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCCGCCAAAATCACTCCTGGAATCTTCCCCCAGACTATGTTTCAGATGGCGGGGTTTCCACATAACT # Right flank : GAGAGTAGAATCAATGATAATCACAAAATATAACTCAAAATAATGCCAAGAGCAGCAGCATCTAACAGACGAAAAGCCCCAGCCAAAAACACACCTTTAGAATGGGCAGAAAATACCGAATTAATTGGTTTAGTATTTGACTTAGAACCAGCTACTTCCGCATCTTTATATTCTCAATATACCATTGCCCTCCATGCTTGGTTTTTGGATCAAGTACGCCAAATTAACCCAACACTTTCAGCATATTTACATGATGGGGAATCAGAAAAACCCTTTAATATTTCTGCCTTAGAAGGTCAATTAGTTCCTACTGGTAAACAACTACAACTACAAGCAAATAACACCTATCATTGGTATGTTAACGTTTTTTCTCAGCCAGTAGTCCAGTTTTTAAAACAATGGTTAACCCAACTGCCATCAACCATAAATTTAAGAGATGCGGAATTACAAATCAAACAAATAAATATTGTTAACCCACCAACTACTTATCAGCAAATTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7168-7567 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000028.1 Sphaerospermopsis reniformis strain NIES-1949 sequence028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 7168 36 100.0 38 .................................... TCCCGGGATAAACTGGGCCAGGTTGTGGTCACAACCAC 7242 36 100.0 33 .................................... TGCTGACGCGCTTTGGCAATTCGCCATCCTTGG 7311 36 100.0 37 .................................... CCATCAACGGAGCCAACAGCGATGATTTGATTAAATA 7384 36 100.0 39 .................................... CACTCCCAACAGGGAGGCTGGATGGGGTTATAAAGCTTC 7459 36 91.7 37 ....C....C...T...................... CCTACTAACCATCCTCCAACTCCTCCGACAAGGGCAA 7532 36 97.2 0 ....C............................... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 37 CTTTACAAATCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : CTTCGCCAAAATCAAAAATATCTTGATTTGTAGGTTGGGTTGAGGAACGAAACCCAACAAATACGTTGAGTTTACAGCAGTTTTCATGTATTTGTACCACATCCTTCTTGTTATCTTCCTTTCTTCCTTTGCGCCTTTGCGTCTTTGCGTGAGATTAAAAAATGTGGTTCATTTACCTGAAAATCGCTGTAAGTTGGGTTTCACTTCGTTCAACCCAACCTACGGGAAAATGGCAAAGGTATTGTCATCTGTCAAAAGCTTGACATTTATGGCGATGTGTTGTATATATAAAAAGTGTATCGAGAACATCGACACACGTCCCCCGAACCTTGAAAACCTAATAAATTCGTTGACCTGTGTCGATTGCTTTTGTAGCAAGGCTTTTGACTCTTGAATGAGTCAGTTTTTTCTCAATAAGCACTGATTTTTTCTCAATAAAAAAAGGTGTGTCGATTGGGGTATGTAAAACCCTTGCTCTGTAAGGTTTCTAGAAGTAAACT # Right flank : CAATTATTTACCAAAACCTAAACCAAAGCTTTGAGTAATGCTTGCAGTTTAAGCTGCACTTCAGCAAATTCTTTTTCAGGATCAGAACCGGCGACAATACCAGCACCTGCATAAAGTCTAGCGTGATCGCCATCAATTAATGCTGAACGAATACCGACAATAAACTCACAATTTCCCTTTGCATCTACCCATCCCAAAGGTGCAGCATATAAACCCCTTTCAAATTTTTCATAACAGCGAATTTCTGCACAAGCAATATCTCTATCTGCACCGGCAACCGCTGGTGTAGGATGTAATTGGGCAACGATTTTTAAAGGGTGGACGTTAGCAGGTACTACCGCAGTAATGGGTGTCCATAAATGTTGAATATTAGATAATTGTCGCAGACGAGGGGCTAAAATTTGCGGAAATAAACCGAGTTGTGATAACCGTTGGGTGATAAAATCAATTACTAGGTTGTGTTCGTGTTTTTCTTTGGTACTATTAACTAAGTTGTTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAATCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 5537-5139 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000239.1 Sphaerospermopsis reniformis strain NIES-1949 sequence239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 5536 36 91.7 35 C................A....G............. GTAATATCTTTGAGGTTCTTCAAGGAATATATAAG 5465 36 100.0 38 .................................... AAACTCCTGCCGGATCGCAGGCTACGGAGTTGACATAA 5391 36 100.0 39 .................................... TGTCGCCTATTTGGTGACAACAATCGAAGCCTATGGCTG 5316 36 94.4 34 ......................G...G......... CATCCACGCGCTTGACAATCACGGCACAGGCGAG 5246 36 97.2 36 ......................G............. GTGTTTTCTCCCCCCTTGGGGACTTTACACTCTGAA 5174 36 91.7 0 ........T.............G............C | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 95.8 37 GTTTCCATCCCCTTGCGGGGAAATTGATTTGGAAAG # Left flank : GATTGTTTGCATTAAATTTTTTAAAGCATCAACTGTAAATACATTTTTGCGGGGTATATAAACAGTAACGGTTTCGGTGTTTTGTGTTTGGGGTTGTCCACGTAATGAAACCCAGTAAGCACAGCGACGTAAACACAGTTCTGTTTCTGACTGTTTAATCCATTCTTGCAGATTTTCAGGGATGAGAACAACTACTAATATTCGAGGTGCAACGGTTCTTTCTTTTCTGAGTTCGTTGTAGTTTTTGATTTTTAAAGGATAGCGAATAGTTTCTCCACTGAGGATATCTAGTGAGGTAGATTTTACCTGTAAATCTAGTTGTGGTTCATACAGGGTATCATCTGTTACTGTACCTGTAATTGTGGCATCAATTCCGCCTACATCTAAAATTCTTGATGATTTTTGAAAGGAATATCCTGCTGCTGTGGTAATAGCATAAATGTAAGCATAGCTAAATTCTTCTTTTTGTAAATTAATATCCATTATTATTTAGATTTTTT # Right flank : GCTGATCCTGTAAACGATCCACACCAGTCAACGAAGTTATGCGGTTTTCAAGGTTCGGGCTTGTGGTGTCGAAAAACTTTTACCATTTTTGTTAAAGTAACCCATCTCACCTGAAATTGACAATATTACTTATCATTTCTTAAACATTAGCTACTTCAACACCCATTCAACACCCAAAAAATCCCACTTTCCATCCTGAGATAGCATTTCCTCATCTCAAGAAGTACAAAATTATCTGCGTTTATCTGCGTCCATCTGCGTTTAATTTATCAATTAGACTTCTCCAGAAAAGAAATTATGGCTTATTTATGGGGGCAGGTCGAAGCATTTGGGATATCTAGATGTCTGATTTTTCCGTCAAATTATCGCCCAAATGCTTCGCCCCTACAATATATTAAAAATCAATACATTCTATTTTGGAGAGGTCTATTGTCAATTATCAACTCTGACAATTTACCTAAACTTAATCTTATGTTTGCACAACATTAACCTTTTAGGTG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCTTGCGGGGAAATTGATTTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 6918-7182 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000239.1 Sphaerospermopsis reniformis strain NIES-1949 sequence239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 6918 36 100.0 37 .................................... CAGCTTCCACACTCTTGACCCTGAAACTAATCATCAT 6991 36 100.0 36 .................................... TTTAATTTGTAACCAGAGGGGATCTGGGTATTCAAG 7063 36 100.0 48 .................................... TCATTTATTTTCTTATCCATCTCTGGCGCTTTCTCAACGCCAAGAATG 7147 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ================================================ ================== 4 36 99.3 41 CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : GCGTGGTATTTGATAAACTGCGGCAAATCAAAACTATACTGGAAAATCATGATTATATTTTAGCTATTAAAGCCTATCAAGAACGTTTACCAATTCGTTGTACAGGTGATTTGTTCAAGGAAAATGACCAGTTTATTTTACAAAATCCCCACAATTTTCAAATTGATAATATTTGAATGCTTAGGTAGGGTTTAGGTAGAGATATTGATGGGTTTTTGGTGCTGAGGAAGTAAAGTTTTAAGAAATGATAAGTAATATTGTCAATTTCAGGTGAGATGGGTTACATTAATGGAAGTGGTAAAAATATTTCGACACCACAAGCCCGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTGGATCGTTTACAGGATCAGCGTTTCCGGTTTTACAATGCCTTACTTATTGAGAATTTTTTGGCACTTATTGAGAATCAAAAAAGTGGTGTCGAAATGGGGATCTGAAACCCTTGCTCTGTAAGGCTTCCAAAAGTGAACT # Right flank : AAGTGCTAAACTACCTAGTATTACAATCGAAAAATGCTAAGATTAAGAGTAGCCTAGTTCAACCTAACTTCAACACTATGACTAATATTAATATCACTGTACCTGAAGCCCTAAAAAGTTTTATTGATCAAGAAATTGCCGCAGGTAATTATAATTCAGCGAGTGAATATTTACAACAATTAATTATTCAAGAAGCAAGACGGAAAAGTAAAGGAAATTTAGAAGATTCTGTAATAAAGTATCAAGAATTGGAAATTGCTTTAGATGAATTAGCTGATGATTTTGCAGCGTGTGTTGGTGCAAACGTACCTATTTTATCTGATTATGCTGTTAGTCGTGAAAGTATTTATGAAGACCATTATTAAAAATAGAAAATGGAATATTTAGTAGATACCAATATTTTATTACGTCTTGTGCAACGAAATGATCCATTAAATCCCGTGATTAGAAATGCAGTCAGAAAACTAAGAAATAATGGGAATATATTGTTAATTACTCCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1588-176 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000291.1 Sphaerospermopsis reniformis strain NIES-1949 sequence291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 1587 23 100.0 50 ....................... GCAAACTTAGTGTCTCTAGGGACGGATTTTGTTAACGTTTCTAATTACCT 1514 23 100.0 48 ....................... GATCTAACCATTACACTCGCGGGAAATATATTAGGTTTCTAATTACCT 1443 23 100.0 52 ....................... ACGTAAAATTCCCGGACGCTATTTCTCCGGGACTTCCAGTTTCTAATTACCT 1368 23 100.0 50 ....................... ATCTTCTAGATATTCTCCAGATTCAACATATATAGTGTTTCTAATTACCT 1295 23 100.0 54 ....................... CGGAATTAGTGTCAACAGCATTACAGTGGATAACAGATGAGTTTCTAATTACCT 1218 23 100.0 48 ....................... ACAGGCAATTGCACCATAAATATGTGCAAGCTTAGTTTCTAATTACCT 1147 23 100.0 50 ....................... TCCTAGATTACCTTTGTTAAATGGTTCGTACCCACCGTTTCTAATTACCT 1074 23 100.0 49 ....................... GACAAGGAAGCGGTAAAACCGATACTACAGCTACTGTTTCTAATTACCT 1002 23 100.0 52 ....................... ATGAAAAAATACAAATCAGAACTCATAGAAACCATAGGGTTTCTAATTACCT 927 23 100.0 50 ....................... AATATTTGTCAACTATTTTACTAAAAATCCTGCATTGTTTCTAATTACCT 854 23 100.0 48 ....................... TTATGGGAGATTATCAATAACAAAAAACCCCTTTGTTTCTAATTACCT 783 23 100.0 51 ....................... TAAATTAGCTTTCTTCTATATCAAACCATTCAGAGAAGTTTCTAATTACCT 709 23 100.0 52 ....................... TATATTATATATAGACAAAGCAAAAGACGACCGCCCAGGTTTCTAATTACCT 634 23 100.0 50 ....................... CTTTTTCAACTTTAGCTCTTAAAATGGTCATAGTTAGTTTCTAATTACCT 561 23 100.0 49 ....................... AACATCAGAATTACTTATCTTGTCTACATTGTCTAGTTTCTAATTACCT 489 23 100.0 46 ....................... TAGACAGTTATCTATATCTCGCTTTGTAGCACGTTTCTAATTACCT 420 23 100.0 49 ....................... AAAAACCACTAGATAGGGTAGTTATAAAATACGGGGTTTCTAATTACCT 348 23 100.0 50 ....................... TTCAATTAATGCTTGACATATTTTAAGGTATCCTATGTTTCTAATTACCT 275 23 95.7 54 ....T.................. TGGCTATAGTTTCCACTGATTGAATCCTAAAAGGTTTTAGGTTTCAAACTACCA 198 23 82.6 0 .C...........A..A.A.... | ========== ====== ====== ====== ======================= ====================================================== ================== 20 23 98.9 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTGCTGGATGTAGCTGTTCTGGGCATGATTTTGAGGCTACATAATGTGATTTTCTGTATTATACTATGTTTTGGTCCCCTGGTGGGGATGGGGTGAGGAGTGGGGAGTCAGGAGTCAGGAGATCAAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCGGGACTTGAATATAAAATAGAAAGAGTGCAGTAATTATTTGTAACAAAAAAACTCTTGACAAGTAGGTTGCTAAATTTTACTCTTGGATCAAGATAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : CGTTTAAATGAATCAAATTGAAACAGATATCAATACTGCTCGGTTAAGGATTTTCGTAGCGACTGTCTTGATTGTCAAGCGATCGTAAAGGAAAAATTTAAAGTCTAGGAAAAAAGTCAGAAAATAGAGGATAAAAACAAAGCAAAACAAAACAGGTAAATTATAGATGGCTATAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 52020-51195 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000004.1 Sphaerospermopsis reniformis strain NIES-1949 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 52019 37 100.0 41 ..................................... AAACATAGTCTACCACACCCTACGACACAGGTATAAAAAAT 51941 37 100.0 42 ..................................... ATTCCCACATTTCAAGTAAACCTTGATAGCTGACATTAATAG 51862 37 100.0 40 ..................................... TGAATCGCTTTTCAATCTTGGTGAGTGCGATCGCCAAATT 51785 37 100.0 41 ..................................... TCAGATGGTTTTAGATTTTAAATTGAGATTAGATGTTTCAA 51707 37 100.0 52 ..................................... TTTAACCCTGTTTTAACATGAGTGTACCAGCCAGACTTTTTGTTATGATCCC 51618 37 100.0 52 ..................................... TTTAACCCTGTTTTAACATGAGTGTACCAGCCAGACTTTTTGTTATGATCCC 51529 37 100.0 44 ..................................... AAGTCTTTGATGTGTTCTGAGCTCTCTCCGTATACCTCAACCAT 51448 37 100.0 40 ..................................... AATACTCCTTCTACAACTTCAACTAACTCATCTGATTTGA 51371 37 97.3 39 .........................A........... CAGCAGACAGTTCCAGACAGGTGTCTGTAAGGGTCATCA 51295 37 94.6 27 ...................G..T.............. TTGGCAAAGTCTTGATTCTGCTCAGAA Deletion [51232] 51231 37 81.1 0 ........C........A...AG...A.C...A.... | ========== ====== ====== ====== ===================================== ==================================================== ================== 11 37 97.5 42 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Left flank : GAAAAAGCAGAGTTAACATTATTTGATCCTGAAAAAATCTGGAGAGTTAGTCGAGAAAGTCTTTATTCACAAGCTGATAATACACCTTGGTTTGGCAAAGATATTAAAGGTAGAGTTTTACAAACTTGGTGTTAATAGGGAACTACCAGATTATTTACTTTTGTAAAGTTTGATATTTCGACTTATGGGGGTATGAAGAGGGTTGAAATACCCTTATCTTATGGTTTTGGGGATTTGTAACGAAATGTAAAGCAATGTATTACTTTTGTCGCTAAGAGCTAGAAAGACCTATATTCAGCAATCTTGGGTAATTTGCAAAAAATATTAGTTTTTTGGGTTGACATCTTAGAGTTTTTGTTTTATAGTGTATTTATTGGCTGGAAACAGCAAACAGCACCTTGAAAATTAAATACTGATTAACCTTGTTACATTACCGTTTCCGTAGCTTGGCGCAAACGCCTTTTGAAAGCTAACTGTATCAAGGTCTCGATGACTATAGG # Right flank : AAACCCCCGATCGCAACAATTAAAACAAATGCGATCGCGCTATTTTCCATAATTCCCAGCAAGGGGCTAAATATATTACAAATACGGGATTTCTTAAAGAAACCCCATATCTATCAGTAGTTATAAACTTGCAAATTTAAGTTAATTCTAACCAACCTTGATAACCGGTCACAATGCGATCGCCATCTTTGAGAATATGAACTTCTATTTGATCACTCGCCCAACTAATTTGATCTTTAAATTCTGGGTTAAAAACATGAACTTTTTGATTTCTGGAAGAAACCGGAGACAAAGGAGAATTAATAGCTAAAGACTGGACAAAAGGACCATCTATTAAAATATCTAATTCTGCTAATAATTCCTGAGAACCAGGAGGTGCAGATTCAGATTGTAATTCTTTTAAAGTAAAACCAGTAAAAGCCATCACATTTAAACCAGCGGCTTTAACTTTATGTGCTAAACTAGCTAATGCGGAAGCTTGCCAAAATGGTTCTCCACCA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 25884-30531 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000036.1 Sphaerospermopsis reniformis strain NIES-1949 sequence036, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 25884 36 100.0 41 .................................... TTTAAAGCGATTTCTAACTTGTTCTCCTCTAAAGCTGCTGC 25961 36 100.0 35 .................................... CGGGAGTCAAGCCCACTCTCAAGGGTTCATTCAGC 26032 36 100.0 39 .................................... ACAGAAGTTTTGGAAGGTGCTTATGAAGCACTAGACAAG 26107 36 100.0 35 .................................... TAAAATCTCTAAAACTCCGGATAAATAAGCTTTTA 26178 36 100.0 39 .................................... GTTGCCTCCTAAATACGTATGTATAGGGTCTCTCGAGGA 26253 36 100.0 48 .................................... TATACCTGCATTTGCTAATCCCGATCTACCGCGTAGTTGCGCTTCATA 26337 36 100.0 43 .................................... ACATCAAGAGAACCGTCAAAAGCATCCTCAGCGTTTATGGATG 26416 36 100.0 42 .................................... TTATAAGAGTCCAGAATTTAGAGTTCCATGAGGATGGAACAC 26494 36 100.0 40 .................................... TCTAAACAATTTCTATTCAATAAAGAGAGTATAATTGATG 26570 36 100.0 38 .................................... AAATTTAAATGTTTATTTAGATCAACTAAACTATCATC 26644 36 100.0 36 .................................... GGGTTTCTTGTACCCGATGTTCCACAGGATACCACT 26716 36 100.0 39 .................................... AAAACAAGAAGAAGATATGTACTACAAAACGACCTCAGA 26791 36 100.0 48 .................................... TCGGAGGCAGAGTACGAGTGGTATGTTCAAAGGATGCTACAAATACCA 26875 36 100.0 32 .................................... CGGGGATGAAATACAGAAGGATGATGGTTTTT 26943 36 100.0 42 .................................... CCTACTAGATTGATTGATGAGGAAAACCTACCATTTACTTTT 27021 36 100.0 49 .................................... ACCAGTTACGAGCGTTCCCGCTCAGTCTTAGTTGTGCTGCTACAGAGCC 27106 36 100.0 35 .................................... ATTATTGCTCAAAAGCAACAAGAGCAAGAGCTACT 27177 36 100.0 45 .................................... AAGAACAAAGAGAGGAGGTGTCACAGCCTCAACTAACTCTATTAG 27258 36 100.0 41 .................................... AGCCTTGCGGCTTTCTGAGGCAGTTAAGGCTGCTTCCTGCA 27335 36 100.0 39 .................................... CACTCTTGACGCTTGTGAGTTTTCTAAGCTAACGTTCAA 27410 36 100.0 44 .................................... CACATACGACTTGTAGCCGCGCCTAATTGGTCATACTTGGGATG 27490 36 100.0 35 .................................... TACATAAAGAAGGTATAATTGTACCTTCGACTTGG 27561 36 100.0 41 .................................... AACTTCTATGAAGGTAAGCAGAAGCTAAACTGCCACCAGGA 27638 36 100.0 39 .................................... TCATAGAAGAGGAGGTTCAAAGAGCCTCCCTTCTATCAT 27713 36 100.0 36 .................................... ATTAACTTCACGGAATCACCTATTCCCACCAGGGAA 27785 36 100.0 37 .................................... GAAGAAGAAGAACAAAGAAAACAAGCCTTTAAGAAAG 27858 36 100.0 46 .................................... CTGTAGTTTAGACTCCCTTGATTGGGATTCCTTTATGGAGTGGCTT 27940 36 100.0 38 .................................... TGTGCATATGTACTCTCGCAAGGGTGGTAAGCATGATG 28014 36 100.0 43 .................................... TTGGTGTTTGGAAGAGTAGCCCTGCTACCCCCAGTCTCTGCAA 28093 36 100.0 44 .................................... CAGCCTTGTAGAAATAGGCTCATCTCTTTCAATAGATGATCTCT 28173 36 100.0 40 .................................... AAGTTGCTCCCGCTCCTGCTCCGGTTATGGAAGTTGGTGA 28249 36 100.0 39 .................................... TAGTATCGGAGCAATGGGCTGGTAGAACTCCTTCTGTGG 28324 36 100.0 37 .................................... AAATCTGCAGCAGAATCGAGTTCTGCGTGGCAGTAAC 28397 36 100.0 40 .................................... AGACGAAGTAGTCTGCTGTCTGCACCAAGTTGGCTTTTAA 28473 36 100.0 35 .................................... TTCAGTTGCTAATGGTTGGAGACCCCAAACAACTA 28544 36 100.0 43 .................................... GTGCCAGACAGTTTAAAAATGGCTGGGTGAAATCCCCCGCCTA 28623 36 100.0 38 .................................... ACTAGTGCTGAGGCACTGGTTCAGCTGGTTGTTACCAG 28697 36 100.0 40 .................................... AGACTATGACCAGAATTACCTGGCTGAAGCACTAGCCGAC 28773 36 100.0 35 .................................... ATTAACAAGCTATGCGCTCCGTGAAGCTCAATACT 28844 36 100.0 40 .................................... GAGATGGGGTGACAAACAAACCTGTCACCCAGAGATATGT 28920 36 100.0 35 .................................... TGGTGACATTTCAAGGTCACTGTTTAGGTGACTAC 28991 36 100.0 37 .................................... TTATAATTCGTTGTAAAGACGAGTGGGACTTCAACTC 29064 36 100.0 50 .................................... TAGTGAGTTTTCAAAGTTAACGTTCAAAGTTTGGGATTGTTATGAAGACA 29150 36 100.0 38 .................................... AGCCCCGTCGCACGTCCACGGGATATTAACCAAGTAGC 29224 36 100.0 37 .................................... TCGCCTTGTGCAGGGAGTGGTGTACTAGAAAGTACGA 29297 36 100.0 42 .................................... GTTGAAGCTATTCAAGAGGCAGACGAGCTGCTACTCCAAGTT 29375 36 100.0 40 .................................... TACTACCCACTTGCTTCTGGTAGTACCTTCATAGTCATAA 29451 36 100.0 36 .................................... AAAAAGAACAAAGAGGGGGAGCAGAAACACCTCAAC 29523 36 100.0 38 .................................... TTTTGTAGGGGCTAAAGGCGCACCTGTCTATGGTGTAG 29597 36 100.0 41 .................................... GTGTACGCAGAGGGTACTCTAGGTACTTTCTCCGACCGAAA 29674 36 100.0 39 .................................... GGTCTAGACACTCTTAAAGTCACATGAGCTTGAGGGTGA 29749 36 100.0 45 .................................... ATTCTGCACTAAGCAGACCTATAAGAGGGAGCAGGCTGTGGTCTG 29830 36 100.0 40 .................................... AAACACCTCAGCAGAGGTAAAGCTTCCAAAGGTCAAAAAA 29906 36 100.0 40 .................................... ATGCTAAACAAGCATGGAAAACAAAATTTATAGAAACTGT 29982 36 100.0 35 .................................... AATTGAGCCCTACACCAACTCAAAAGGGGTTGAGA 30053 36 100.0 40 .................................... AGGAGATATACCCAGAGCAGAGAGATATAAAGGGTCTTTT 30129 36 100.0 39 .................................... TAGAGAGACAACACGAGCGTTCCCACCACCAAGAAAGCG 30204 36 100.0 39 .................................... ATATTTTCAAAAAGGCTGCTCCAGCCCCTGCTCCAGCTC 30279 36 100.0 36 .................................... TTATCCGGTTCTTCTGTACTCAACCTCCAAGGGTTA 30351 36 100.0 37 .................................... GACAAGTTTACTTTTAAAGCTAGAAGAGGCAAGTTCT 30424 36 100.0 36 .................................... ACATGATAGGCTGGAATGCCTATGCTTTCGGTCCTT 30496 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 62 36 100.0 40 GTTTCCATTAATTCCACTTCTTGTTAAGGAAGCGGT # Left flank : TTTTAGCACGGGAAATAGCTAAACCATTATCAATAGGCGCAATTAAACTAGCAATAGAACCAATAGCAAAACCTCTTTCCATTGCTTCTTCTTCTGTAGAGGAAGATAATCCAATTATTGCACCTGTTACACCAAGACTCAAACCCAGCCACAACAGTGCTTTCCAACGTCGTGTGTAACAATATCCAGCAAGGGGAATCAATAAAGATAATAAAACTGCAATGGTTATATTTAAACGAGAAAGCCGCACAATTTTATCTGCTTTTTTCCGTTCTTCTTGTTCATTAATTGCATCTAAAGATTGACGCAACAGTTTTTTATTGTCATTATTTTCTCCCATAACAGATATTCCTTCACCCTGGCGGTAGTTTTGTTTACATCTCCTGTAACAACATACTCGCAATTTTCTCGTGATTCAATGCTTCTCATGCGAATGAGGAAAATCTTCATTTAAGCAGTAGATCCCGGACTTCTCAAAGAAGTCCGGGATCTGATAGTGG # Right flank : TAGCCACCATTATAAACCCTTACCCTGCCTACTGTCTAGAGGCAATTTTCGGCCGGGTCTAAAAAAAAAGTCAACCAGCACCATAAACCATGATGTTAAAACACCTGAAACCCTTACCCAGCAAGGGATCGGCAGGGTCAACGAAAGAATCAACATTTGCACCCCCTCCCCTACCCGGCCGCAAAAAAACCATTACTAACAAAAAAATTCCTTATTCGCATGAAACCCCCTTACATTACCTGGCAATTAGGTCTATTTTAAAAAAGTCATCAACTCACAAAAAATATGTACATTTCTCATCGTGCGGCTTTAGTCAGAAATTTAGGAGTCGCTATATTTAATGGGTCAATTACACTCATAATCCTATTAATTGCCCCATTAGGATTAGCAGCAGTTATTGTCAATACATTATTAGTTACCTTAGCTAGTTTTATAAATGCTACAGCATCTGATAAAATTGTGGTTTTTTTACAACCAACTCACATCAAAAATATGATAGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTTGTTAAGGAAGCGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2444-1748 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000035.1 Sphaerospermopsis reniformis strain NIES-1949 sequence035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================== ================== 2443 37 100.0 38 ..................................... ATTTGAGGCGCAGTCAATCTCAAATACTCCCAGAGCAT 2368 37 100.0 37 ..................................... ACTAAAGAACCCAGATAAACCAATTACCTTTAGGATA 2294 37 100.0 35 ..................................... ATTGACGGCATAACCTACAAAGCCGCCACAGGGTT 2222 37 100.0 31 ..................................... GGTGCCAATACTGTGAATGCTCCACTATGCA 2154 37 100.0 40 ..................................... TGCTGATTTCCCTCAATCCCTTGCTATTCAAGTCTTGTAG 2077 37 100.0 43 ..................................... ATGATATCCTTTGCCCATTTGATCTGCTTTTCAGATCCGGTTA 1997 37 100.0 45 ..................................... CTCTCAAGTTGAGGACGCGGTAACTTCCCGCATTATGGCACGGTG 1915 37 86.5 94 G...A......AC.......................A ATTATTTTAACAGTGGTGGTTGTGGTGGCGGTTGCAGTTAAAATTACTCATAATCCTGTAAATCCTAAAATCCTGGACATCCTGATTCAGACAA 1784 37 83.8 0 G...A........A..A.......G...A........ | ========== ====== ====== ====== ===================================== ============================================================================================== ================== 9 37 96.7 46 ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAGCGGCGGACTAAAATTCACAATATCCTCAAGTCTTATGGCCAATGGGTACAGTATAGTATTTTTGAATGTGAATTGACTGATACTCAGTATGCCAAACTGCGATCGCGTCTCCATAAGCTGATCAAGGCTGATACTGACAGCATCCGTTTCTATTTCCTTTGTGCTTGCTGTCACGGTAAGATAGAAAGAATCGGTGGTGAACAACCCCGCGATCACACTGTTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAAATTTTAGGTGAACAAAAAATGGCTGAAATTATCTCTATACAAGGCTTTCATGATTTTTATCCAACTCACCCACCCGCGCACTTTACACAGCAAGAGTTTCAGCCATTTTACCCCTTGACACAATTTCTGAAATCGACTATTATTATCTCATTCGCGCAATTGAACCTTGAAAACTACATATATATAGGCTTTCAGCCGCCCGCT # Right flank : CTAAAAATCTCTATTTTTGTTTTCAGAAAACACTCTTAAATACTGTCACCTGTCACCTGTCACCTGTCACCTCAAAAATCCCATTTCCTGTAAACCCTGACGCAACCTTTTAGCCTCTTGCGGATTATCTTTTTCATGGAGAGCGATCGCATATTCAAAAGCTGCCAAACTATTCTTCACATCACCCACTCTCAACAACACCACCCCTAAATTTTGATAAGCTTCCGCATAATCAGGATTTAAAAAAACCGCATGATTATAAGCATCAATCGCCTCAACAAACAAACCCATTGCTTTAAACACCATCCCCAAATTATAATACCCAATCACAAAACGATCATCAATTTTCAAAGCAGTTTCATAAGCATTTTTCGCCCCTGGCAAATCTCCCATCGCTTTCAACAAATTACCCAAATTATTATATCCTCCTAATTTCAACAAAGGATAAATAGGTAATTTAACCGCCGCTTGATAATAAGAAATCGCCAAAGAATAGTTTT # Questionable array : NO Score: 8.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.65, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 22133-22484 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000048.1 Sphaerospermopsis reniformis strain NIES-1949 sequence048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 22133 37 100.0 45 ..................................... TTTTATGATTGTCCCTTCAGGACGTATTGGATTGTAATTAATGTA 22215 37 100.0 42 ..................................... ACAAAGGAGATTGGAAGGTTAATGCAATAGCCAGTGGAATAG 22294 37 100.0 39 ..................................... AGTGATAAAATTCCCGACTTTATCCACAGAAGAGTTTTT 22370 37 97.3 41 ...........................T......... TCTCGGGCGAAATTTTTTGCCGCGATGATGTGATCTAGTTT 22448 37 91.9 0 ........CC.T......................... | ========== ====== ====== ====== ===================================== ============================================= ================== 5 37 97.8 42 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Left flank : AGATAATGAGGAATTGAATCACCAGTTAGAAAAGCGGTGGTTAAAGGTGCTGAAGTTGAGTGAGGATAATTTGCGGGTTTATCCTCTGGATGAAACTGCTAAACAAAAGACGCGGGTTTACGGAAGTGAACCTCCTTATGAACCACCTGATTATTTAATTTTGTAAAGTTTGATATTCCTGGTTATGCGGGTATGGAGGTGGTCGAAATATCCCCAGAGTCAGCTTTTGGGCATTTGTAACGAAATGTAAAGGAATGTATTGGTTTTGGCGCAGGAAGCTAGAAAGATTTACATTTAGTAATCTTTGGTAATTTTCAAAAAATGTTGGTTTTTTGGGTTGACATCTGGAAGTTTTTGTTTTATTCTGTATTTATTGGCTGGAAACGGCAATCTGAACCTAGAAAATTAAATACTGACTTCGCTTGTTACATCATTGTTTCCGTAGCTTGGCGCAAACGCCCCTTGAAAGCTATTTGTAACAAGGTCTCCATGAGTGTAGG # Right flank : CAAAACTTGGGGAGAAAAAAAGATAGAATTACTAAAAAATGCGATCGCTTGGTTGTAATAAATTAGGACTTACGCAAGATGTGACTGAAAACCTTATTCTTGCGTAGGGGTAATTCATGAATTACCCCTACTTTCGTTCCCTGTTGCGTAAGTCCTGTGTAATTTAATCAGCTTTTGCAGTGCCAATACAAAAAATTGAACTTGCCAAAATAGACAATAAACAATAGACATCTCCAGAAAAGAAATTCTGGAACTTATTTATGGGGGCAAGGCGAAGCTTATGGGATATCTAGATGTCTGATTTTTTCGATAAATTATGGCCCTGTAAGGGCGAAGCATTTGGAAAATATCCTTTGGTGAATACCGATCATTAATCGCTCGAATGCTTCGCCCCTACTTCGCCCCCACAACTTATGACAAATTAATACATTCTATTGTGGAGATGTCTAATAAACAATGTACAATTGAAAATTATACTTACTGCAATTGGTTTTTTTGTC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10635-8672 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000094.1 Sphaerospermopsis reniformis strain NIES-1949 sequence094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 10634 37 100.0 43 ..................................... AATAAATTCATCCCCGCAATCTGGGAAATTGCCTCAAACCCAT 10554 37 100.0 36 ..................................... CGAACCTTGCAGAATCTATCTAACCCAAATCTTTTA 10481 37 100.0 35 ..................................... TCCAAAAGAGAATTTCATAGGCTATAAAACGCTCG 10409 37 100.0 34 ..................................... GCAAATGTGGGCTTCAAACTTGGAATAGCAACAA 10338 37 100.0 36 ..................................... CTTTTCTTAACCTCTGATGTTTGTGCGTACCTTTAC 10265 37 100.0 36 ..................................... GGCAGAATGTTTTACTGTTGGATAAACACCACTGCC 10192 37 100.0 42 ..................................... TCCGGTTACCGGACACCTATTTTGGTTCACATCATCAATTTA 10113 37 100.0 35 ..................................... TAGCTATATTAGCCTCCCAGACAGCCTCAGCATTT 10041 37 100.0 35 ..................................... ATTCTATAACACTATCGAGGTTAGCTAGTGAGAAC 9969 37 100.0 35 ..................................... AGTAAAGGTTAGCAACGAACAGTTCGTTGGGGCAT 9897 37 100.0 38 ..................................... GAAAACTATTCTTCAGGAGTGAAAGCGTTAGGGGTTTC 9822 37 100.0 38 ..................................... TAGCTAAAATTTACCAGGAGGGTGTATTTACTGGTAAG 9747 37 100.0 38 ..................................... AGCAGTGAGAATCAAGCTGATAACACCTCATTAGAAAA 9672 37 100.0 34 ..................................... TATTGAAAGTGTGAGGCGAGGGAGGGAAGCCCAA 9601 37 100.0 35 ..................................... ACGCTGATTACTTGAAAGAATTGGCGCGTCAAATC 9529 37 100.0 35 ..................................... ATAACTCTAGACTTAGCAAGTTTAAAGTTGCCAAA 9457 37 100.0 38 ..................................... TTAATTTGGTAGGAACTATGAAAAAATTACGCTCACCT 9382 37 100.0 40 ..................................... GTTATTGTACAACTTAAATTTTCTGGAAACTGCCCTTAAT 9305 37 100.0 38 ..................................... TCTCATGCCTTAGAATGGTTAGCGATCGCCTCTGAGAA 9230 37 100.0 38 ..................................... CACCATTAACTATAGCAGATGGTTTTGTCAGCCATAGT 9155 37 100.0 35 ..................................... CGGAGATTTTTGGATAATGAGTAAGCAGAAAGATG 9083 37 100.0 38 ..................................... AAATAGGGAAATCAGTTGAAGTAATAGCAGCGATTGAG 9008 37 100.0 41 ..................................... TCTGCATCTAAAATGTGGCCATTACCTAAGACTTCTCTTGT 8930 37 100.0 37 ..................................... TCTACATGATAGTTAGAGCAGAACCATAGGCAAGGGT 8856 37 100.0 38 ..................................... CTTTCAACTTTAGACAATGACACTGCGGAAAGTGTGGT 8781 37 100.0 36 ..................................... TATTAATTACATGAGGCAAAAAAACCAAATCCCGAA 8708 37 89.2 0 ....................T.CT.A........... | ========== ====== ====== ====== ===================================== =========================================== ================== 27 37 99.6 37 GTTTCTAGAAGTTCTGAGGACTGATTGTTGTTTAAAC # Left flank : GTTTATTTGAAAAAGTGCAGCAAGCTGATGTGAATGCTGCCAGAAATCATAAACAACATGGAGGCTTTGAAGTGGGAGAGGTGAAATATAATTTAACAAAATTACAGTATCAAAAACCCAAGAGATTTAAAAAGAAAAAGTTGACAAAGTAATCTATTTCAATTATTATTAGATTACCGCAGTTTGGGCGGGTGATTAAGTGATTAATCTATGGCTTGTAAGTTTTGATCTTTGGATTTAAACCCAGAAGCAAGGGGTGTGGTGACTATCCCCGTAGACTGTCCAGAAATATGGCAGGAACAACTTAATTTTTGGCAAACCACAAGCTCGGCTAAAAATGCCGGGGATCTGCCAAAACCTCAGAACCTAGACAATTTAAGGGTTTCAGCACTTCAAGTCTCAGATTTTAAATGCTCTTTAGCGGCTGAAATGGACTTTTTGATCAGGTCCGCCAAATATGGCTCTGAAACTTAGGCTAATTAAGGATCTCAATGGGCGGG # Right flank : CATCTCTCTAAAAAACCCTCTTCTTCCTCTCTTCCTTCGTTTCTTCGTGTCTTCGTGGTTCAATAAAAAATCATCCTGAAAATCCTAAAATCCTGGACATCCTGATTCAGACAAAAAAAGAGGCAGAGCCTCAAAAAAGCATTCCTAGTCAGAGACTAGGAACGAGATAAACGAGATGAAAACTAACCCAACTTAATAGTTTTCGTAATCACCGATAAACTTTCCTCAAACAAAGCCTCACGCCCCCAACGTTGCACCTGCTGACTTAATAAATATTCCGGCTTTTGTTCAGCAAGAGAACTAACTTGTTGAAATAAACCAGCAGATTGAGCGCCACCTTGAGTTTCCATCCGCATACAACCGCCGGTTTCAGAACAAATTACCGTACCACAATTAGCTTGAGGATTAGTAGAACTCAAACGCAAAGCAATCAAATCACCAACAATTTCGCCAATATCAGCAACAGGAACACCTGCTAACTCTGCATTAATTTGTCTTTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGAAGTTCTGAGGACTGATTGTTGTTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 20672-19845 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCE01000074.1 Sphaerospermopsis reniformis strain NIES-1949 sequence074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 20671 37 100.0 32 ..................................... TTCTCTTGGCGACTTTTTCGCTACAATCACGG 20602 37 100.0 34 ..................................... GCACTGTATGACGGCATTAGCTCCGGCGGTACAG 20531 37 100.0 35 ..................................... TTTATGGTAAGAGTGACCCCATGAGCCGCACATTA 20459 37 100.0 38 ..................................... TTAGTGAACTTTGCTTGGTAATAGGAATGCCCATATAA 20384 37 100.0 35 ..................................... GTTGAGCAGATAAACATCGAAGCAGCCGCTAAAAA 20312 37 100.0 33 ..................................... GTTGCCCCGGCTCTAAGGGGACTGAACGCCCAA 20242 37 100.0 39 ..................................... CGATGAAAGTGCCTTTTCTTGCAGCAAAGTCTAAGGTTT 20166 37 100.0 33 ..................................... GGGCAAAACCGCAAAGAGGAAGACGCTGGTATT 20096 37 100.0 32 ..................................... CGTAGCCACTGCCTAAAACAATAATGGTGGTG 20027 37 100.0 36 ..................................... AAATTAACTTTTTGTAAAGCTTCATTTTCTGTAACG 19954 37 94.6 36 ..........A.....A.................... ATCTCCTAAAGCAATAACCATGTCAGCAAGCTTTCT 19881 37 91.9 0 ..........A.....A.......G............ | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 98.9 35 ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAAC # Left flank : ACATCCGCTGCATCTGCTTCTGCTACTTCACAAATTACCTCACCCGTAGCGGGGTTAATGGTAGCAAATTTTTTCTTGCTGACACTTTCCACCCATTCATTATTTATTAGCAGTTGGGTAGGACCTATTTTCACCTGTGGTTGTGGTCTTGTTGCTGTAACCATCAGACCCTCCTAAAATTTTAAGGCTTTTTGTTAAATGCTATTAAATTGATTCCAGGAGTTACACAATTACGGCTAAATCTTTTATATATGTTTACATTTGCAGGTGTTTTGCGCGGATGGGTGGGTGTAAAAAATTGGTGCTGTAAAAAAATGGCTGTATCTCTTGATAGGCTTGACTTTGGGGTTATTCCGCTTTTCCACCCACCCGCGCACCTTACACAGACTGGGTTTGGGTGTTTTTTGCTCTTGACACGATTCCTGAAATGGACTATGATAGAGTCACTCGCGCAATCGAACCTTGAAAACTAAATATAGATAGGCTTTCAGGATGCCGCT # Right flank : GGCTTAAATGTAAATACTCAATAGATCCACGATTCGTCATCAAAATTTCGTAAAAGTTAAAGACGGTGATTGGTGATTGGTGACTGGGAGGATGAATAACCCAATGCCCAAAGAATATTAAGATTGTTATAGTGTAAATATATTTTTGTGATGAATACCGTACAAGTTGTTTCTGGTTTAACTGAAATTGCCCAAAAAACCCGTTTAGCTGCTAGTAGGTTGGGTGTACTTGCTACTGAGGAGAAAAATCAAGCGATTAATGCGATCGCTCTAGCTTTAGAATCTGCTCAGGATGAAATATTGGCTGCTAATGTGGCTGACTGTGAAGCAGCTATGGCGGAAGGTATTGCTAAACCTCTTTATAAACGTTTGCAGTTAGATGAACATAAATTAAGAGATGCGATCGCTGGTGTGCGTGATGTTGCTAAGTTAGATGATCCTGTTGGTAAAGTCCAAATTCACCGAGAAATTGATACTGGTTTAATTCTTAAACGTATTAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //