Array 1 1-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKKD01000115.1 Limosilactobacillus fermentum strain UMB0187 ERR1203599.17957_1_11.115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... ACTCCCACAAGGGCGTAACTATCGTCACCA 67 36 100.0 30 .................................... AACAACGCCAGGTTGGCAACTATATCGTCA 133 36 100.0 30 .................................... ACATACTGCGGATCATAAGGATTGGCTGCT 199 36 100.0 30 .................................... TCACTGAAGAATTAACACAGTCGATTGCTT 265 36 100.0 30 .................................... CGATCTCACCAAAGATTGATGGCGTCACGC 331 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : | # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 11933-10167 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKKD01000028.1 Limosilactobacillus fermentum strain UMB0187 ERR1203599.17957_1_11.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 11932 36 100.0 38 .................................... GTCATTATCTTGTTTCATTAATTGCATTTCAAACGTGT 11858 36 100.0 36 .................................... CTCTTTTACGTTTGAATATTCGTGCATTGTTTTTCC 11786 36 100.0 38 .................................... AAGGGAGGTTTTTCACCTCCATTTTTTTAAAAATGCTA 11712 36 100.0 35 .................................... GCCAAAATTTAGGAAATTATCCACGTGGTCAATGA 11641 36 100.0 35 .................................... TCGTCGTCTAATCTGCTCAATGCTACCGTCGTATT 11570 36 100.0 35 .................................... GAAAGCACTGATTACTCGTGCGAAGTAATTTGTCC 11499 36 100.0 37 .................................... TCATCCCGGATAATTAAATCTAAATCCGCTAAAGCTT 11426 36 100.0 36 .................................... CTAGTCACCCAGCGCTTGAATTTCTTAGCGCTTGGT 11354 36 100.0 37 .................................... CCGGGTGACCTTCTTAAGCTCCGCGTCGTCCACGACC 11281 36 100.0 34 .................................... TCAAACTCGAATAAAAGGCCTTTCCTCTTGTTTG 11211 36 100.0 40 .................................... CGTTAACCGGCAATATTCACACTTCCCACAGTGCTTCGGT 11135 36 100.0 34 .................................... GTTCGCCATGCTTCTCTCCGGTTTCTTCAAATGA 11065 36 100.0 38 .................................... GTTAGACGAGTTTGCTCTGCGTAGATGACGTGGCGCTG 10991 36 100.0 36 .................................... TGACGTATGTCAATCCTTCAGTGCTGTTCATTACCT 10919 36 100.0 35 .................................... TTTGGACAACGCATCACGTGTGTTTGCATATCCGA 10848 36 100.0 34 .................................... AAAACAAATTGAAGTCAATGGACTAAGTAGCTAA 10778 36 100.0 36 .................................... TAACATATCTAGGTTAAAAGTCAACACTTTTTTTAT 10706 36 100.0 35 .................................... CCCAATAATCCATGGATCATTATCAGTAGTGTCCG 10635 36 100.0 34 .................................... AAAGCTAAGCGTGCCATCATCTGCCTGGTAAGTA 10565 36 100.0 37 .................................... ACAAACTGTGATTGTTTCATAATGATTACCTCTTTCT 10492 36 100.0 33 .................................... GCTTCTTTGATGATCGCCCCCGTTAACTGTTGC 10423 36 100.0 38 .................................... TATTAGCCGTTTTTAACCCATCATAGTAGATACTATCC 10349 36 100.0 36 .................................... TAATTGTCCACATAAAGTAGGCACCAGAACTAGTAG 10277 36 100.0 37 .................................... AGTTGCTACAATGTAAAGTTTCTTTGAGAACATTTTG 10204 36 88.9 0 ...................T.T....G........A | G,T [10170,10172] ========== ====== ====== ====== ==================================== ======================================== ================== 25 36 99.6 36 GATATGAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCGTATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAAGGATTCGACGTCGAACTCCAAAGAAAATGAAGATGAAATTTAATGGGGCACTTAAGCTAACTAAGAGCCGGAAAGTTCGCTATAAGTCAAAGAAGAAAGATGGTTCTGTTGAATTTCATGAACTCATTACAAACACCGAAAATCTCTATGAAATGGGAAAATGTGGGTTCAAAATTAAGGAATTGTAATTTCAATTACTGAACTAGTTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAATGCCCAGAAAAAGGGCCAGGGAGGCTTGAATGAGTACCCGCCTGGTTTAATTGAGGGCATAAATTTGTCAAGTTATCCTTGATTTAGCAACAAAGTTAGCAGGATCG # Right flank : AAGCGAGAGCGTGTATCGAAATCCTGGAATTTCAATACACACTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTTGCAGTAGACTAGATATATAATTTATAATTGACGTATAGGTTATATTCGAGAGAAAGAAATTAACACCAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACAAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACGTTAGTGTTTGATAATAGAAAGTGTTATCTATCGGAGCGAGTGATTGAATATTGCATTCTCAATCACATTGGAATTTTATTCTGTGACCGAAGCCACTCTCCTTTAGAAATGATTGAGACCACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTAACCTTAACTAGTAAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATGAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 17311-18468 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKKD01000037.1 Limosilactobacillus fermentum strain UMB0187 ERR1203599.17957_1_11.37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17311 36 100.0 30 .................................... ACTCCCACAAGGGCGTAACTATCGTCACCA 17377 36 100.0 30 .................................... AACAACGCCAGGTTGGCAACTATATCGTCA 17443 36 100.0 30 .................................... ACATACTGCGGATCATAAGGATTGGCTGCT 17509 36 100.0 30 .................................... TCACTGAAGAATTAACACAGTCGATTGCTT 17575 36 100.0 30 .................................... CGATCTCACCAAAGATTGATGGCGTCACGC 17641 36 100.0 30 .................................... ACTTGTAGAAATGATACTCATCATCCATAT 17707 36 100.0 30 .................................... ACTCCCACAAGGGCGTAACTATCGTCACCA 17773 36 100.0 30 .................................... AACAACGCCAGGTTGGCAACTATATCGTCA 17839 36 100.0 30 .................................... ACATACTGCGGATCATAAGGATTGGCTGCT 17905 36 100.0 30 .................................... TCACTGAAGAATTAACACAGTCGATTGCTT 17971 36 100.0 30 .................................... CGATCTCACCAAAGATTGATGGCGTCACGC 18037 36 100.0 30 .................................... TGCTTCACACCGTTAATGATCCATTTTCCA 18103 36 100.0 30 .................................... GCAGGCCAATCGATTTAAGAGTGTCAGCGT 18169 36 100.0 30 .................................... TCGTTCTTGAGTGAGTCGGAAGCCTCCCAC 18235 36 100.0 30 .................................... GCAGGCCAATCGATTTAAGAGTGTCAGCGT 18301 36 100.0 30 .................................... TCGTTCTTGAGTGAGTCGGAAGCCTCCCAC 18367 36 100.0 30 .................................... AAGACGTGGCTAGACGCTATCAAACTGACA 18433 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGCTACCAAACAGCACTTGATAAGATGATTGTCAAAAATCTTAGCATTCAGAAACGAGATCGGATGAATGACCTTGCTCGTGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGTGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATATAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGATCGTTAGTTTTTGATGAGAAAATAACG # Right flank : TTCAATGCTTTGCTTGAGGTTATGTCCGTATAATTGGTGTAAATTCTAAATAGGACTTTGTGAAATCTGAAAGGAACTTCATTATGCCAAAAGTTGAATTAAATTTAGAGGATGACGAATTAAAGGAGCTATTACTAGGTGATCGGGATAAGGCCATGCAATCAATTATGGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //