Array 1 63138-62270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTWO01000055.1 Pseudomonas aeruginosa strain AZPAE14718 AZPAE14718_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63137 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 63077 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 63017 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 62957 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 62897 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 62837 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 62777 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 62717 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 62657 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62597 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62537 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62477 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62417 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62357 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62297 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38385-39789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTWO01000079.1 Pseudomonas aeruginosa strain AZPAE14718 AZPAE14718_contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38385 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 38445 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 38505 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 38565 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38625 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38685 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38745 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38805 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38865 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38926 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38986 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 39046 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 39106 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39166 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 39226 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39286 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39342 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39402 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39462 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39522 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39582 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39642 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39702 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39762 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1530-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTWO01000161.1 Pseudomonas aeruginosa strain AZPAE14718 AZPAE14718_contig_163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1529 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1469 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1409 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1349 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1289 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1229 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1169 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1109 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1049 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 989 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 929 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 869 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 809 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 749 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 689 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 629 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 568 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 508 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 448 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 388 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 328 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 268 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 208 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 148 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 88 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //