Array 1 5849-1653 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWE01000005.1 Deinococcus sp. JMULE3 Joined_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5848 37 100.0 35 ..................................... AGCAGCGGCCTCGCCTTCTGATCTGGATGCAGCAT 5776 37 100.0 37 ..................................... CAGTGCCCAGCACGAATTCACCGACGGGAACGGCCTG 5702 37 100.0 33 ..................................... TCGCTGACAGCGCGTTTGCGGCTGACGTGGCGG 5632 37 100.0 35 ..................................... GCTGGCTGGGGTCGCTTGCGGTTCAGGATGCCTTG 5560 37 100.0 35 ..................................... ATCGCGGAACTGAACAGCGGTCTGAAGGAGTGGGA 5488 37 100.0 34 ..................................... CGGCGCAACTCAGCGCGACGTGGGACGCAGGCAG 5417 37 100.0 35 ..................................... TGAACGTCGGCACGCACGGGCGCCTGATCATCCGG 5345 37 100.0 35 ..................................... ACCTGCCCACCCTGCTGAACTGGCTGGATGCCCAG 5273 37 100.0 34 ..................................... CTGAGTACGAGCGGGAGTGAGAACATCGCGCGGG 5202 37 100.0 37 ..................................... CCATCAGCCCCGGCTCCGGACCTGTTGCGCCCTGCGG 5128 37 100.0 34 ..................................... TGCGGCATGGTTCGCTAAAGGTTGTACACTCGCC 5057 37 100.0 34 ..................................... CAGGGTACATGATCTGAGGTTCGCTGTGCAGTCA 4986 37 100.0 35 ..................................... AGGCCGAGGTTAGCGACCGCCGCGCTACCCGCCGC 4914 37 100.0 36 ..................................... ACGGACAGTACGCAGTGGTACGTGGTGTATGGCGGG 4841 37 100.0 36 ..................................... TGCGCGCCCGTCGCGTGGACGCTCTGCGGGACGTGA 4768 37 100.0 35 ..................................... GCAGTGGCACGGGCGCGCGGGCGAGCACCATGCCG 4696 37 100.0 35 ..................................... CGCTCTTGAGGGCGTCGGTGACGACGTGGTCCCCG 4624 37 100.0 42 ..................................... CCTCGCGCTGCTCCGGGGTGAGGTTGCGGCGGGTGAGGTCGG 4545 37 100.0 35 ..................................... TCCTGACCGTCGCGCCCACCGCGTGGGGCCAGAGC 4473 37 100.0 33 ..................................... TGATCGCCGAGCTGCGTGCGCAGGCCGAGACGC 4403 37 100.0 34 ..................................... CAGGAGCGATAGGCCCGAGCAACGTCGAGGCGGA 4332 37 100.0 33 ..................................... CTCCGGACACTGCGCGTGGACGGGGGACGCCCC 4262 37 100.0 33 ..................................... CGACCACGCCGGGCGTGTACCGCATCGTGGCGG 4192 37 100.0 32 ..................................... GGACGAGCGCAGCGCCGCGCAGGCCCTCGCCG 4123 37 100.0 36 ..................................... TGACTGAGCTGCAAGAGATTTTCGCGCAGCTGGGGG 4050 37 100.0 37 ..................................... AGGCCGTTGACCCCGCCGTTGATGCCGAGCGTCACGC 3976 37 100.0 35 ..................................... AGCGGCGTTCGATGCCGTACCCTGCCGCGATGATG 3904 37 100.0 35 ..................................... ACCTGGAAGGACATGGAGGACGCCCACGTCGGCAG 3832 37 100.0 34 ..................................... GGCAGATCGCGGAGGATGGCAGCAAGTACGGCGT 3761 37 100.0 34 ..................................... ACCGCCCGCACCTGCCGGACATTGTCACCAGCTA 3690 37 100.0 34 ..................................... ACGTCGCGGGGCAGGTTGCTGCGGCGTCTACGGG 3619 37 100.0 35 ..................................... AGCGGCGTTCGATGCCGTACCCTGCCGCGATGATG 3547 37 100.0 35 ..................................... ACCTGGAAGGACATGGAGGACGCCCACGTCGGCAG 3475 37 100.0 34 ..................................... GGCAGATCGCGGAGGATGGCAGCAAGTACGGCGT 3404 37 100.0 34 ..................................... ACCGCCCGCACCTGCCGGACATTGTCACCAGCTA 3333 37 100.0 34 ..................................... ACGTCGCGGGGCAGGTTGCTGCGGCGTCTACGGG 3262 37 100.0 36 ..................................... ATCTGCAGCACCACATGAGTTTTTCCGTCGCACTCG 3189 37 100.0 32 ..................................... ATTTAATTCCTGAATGTTATAGATTGTGACCT 3120 37 100.0 34 ..................................... CGGACAGCGCTGTCGACCACGTGCTTGGACACGG 3049 37 100.0 34 ..................................... TGCATGACCATGTGATGTACCTGCATGGCACCCG 2978 37 100.0 34 ..................................... CGGCACCTGCAGACGCGCGCCGACGACCTCCCCG 2907 37 100.0 34 ..................................... ACGGCTGGGACGCTCGTGCAGCGGGTGCCGGGCG 2836 37 100.0 36 ..................................... CCGCCAGCATCAGGCGCAGGTTGCCCGGCCCGTGAT 2763 37 100.0 34 ..................................... GGTTGATGCTCGCACCGACGCGCTGCACGATCTC 2692 37 100.0 34 ..................................... CGACCTGTCCAGTGCTCGACGCGCCAGCGCAGGC 2621 37 100.0 35 ..................................... AGCATGCGGATCATCGCGGCTTCCCGCGCGGCCTT 2549 37 100.0 34 ..................................... CGCTGTCGCGCCGCTTCACGATCTCTTCCATGGG 2478 37 100.0 36 ..................................... AATGAGGGTGAGGTGAATCGCGTCCAGTTCATCAAC 2405 37 100.0 35 ..................................... GAGCGCATGGGCGCATCGCCACTCAAGCAGGTGAG 2333 37 100.0 34 ..................................... CGAACAAAGCAGCACGCCGCGCCCTGGATGAGTA 2262 37 100.0 35 ..................................... CAGTACGCGCCCGCCACGAAGGCGGACACGTCGTA 2190 37 100.0 34 ..................................... ACGACGGGGAGGGGCGCCACCGCCAGACATTCAC 2119 37 97.3 34 ..............................A...... TCGATGTAGTGGGTGGTGTGGGGTTCGTTGATGC 2048 37 100.0 36 ..................................... GGCTGAACGCGGAATTCAGGGTCGGGCGTGGCGAGT 1975 37 100.0 34 ..................................... CGGCGAGTACACGTTCCGGCTGCGTGAGGGGCTG 1904 37 97.3 34 ..............................A...... TCGATGTAGTGGGTGGTGTGGGGTTCGTTGATGC 1833 37 100.0 36 ..................................... GGCTGAACGCGGAATTCAGGGTCGGGCGTGGCGAGT 1760 37 100.0 34 ..................................... CGGCGAGTACACGTTCCGGCTGCGTGAGGGGCTG 1689 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ========================================== ================== 59 37 99.9 35 GATTCGGCCTGCCTTCGGGTGGGCCGTGGATTGAAAC # Left flank : GCGCCCACTACCCGCCGTACCTGCACCGATGATTGACCTGCTCGTCTGCTACGACGTCGCCACGACCACCGAAGGCGGTCGGCGACGACTGCGCCGCGTGGCGAAAGTCTGCGTCGCGCACGGACAACGCGTGCAGAACAGCGTGTTCGAAGTGAGCGTGAGCGACACGCAACTGCTGACCCTCCGGCAGAAACTACTGGACATCCTGGACCCGACGGAGGACAGCATCCGCATCTACCGCCTGCGGCAACCTCGCGACAGCTTCGTCGAAGCATATGGCCGGGACCGGTACGTGAACTTCCACGACCCCCTGATCCTGTAAGCGCGAACCCCTCGCACACACGAAAACCCCTGGGGGTTCGCGCAGAGGAAAAAGTCCGTGCAGGACGCGATTCATGAAAATCTGTCCGAAAGAAATGGGAGTACGCCGTGGACTTCCGGTCGAGGTTCGCGCAAACTGGAGTGGGGACACCGTCTGGGACGCACTCCGACGACAACCT # Right flank : TCTGTGAGGTGCGTGTCGGTCAGCGGAATGACCCGGTCGTTCTGCTTGCCACTCGATGGTGGTCAGTTGATGGTCGTGGGGCGCGTCATGGGGTCGGCACGGCGGCGGGTTGGAAGGTGAGGGTCCGCGCCACGTGGTCTCGCCCCGCGCGCATCCGGGCCTGCAACTCGCTGGCGTCAGGCGCGCCGATCACGACGTGTCCGGCCGAGTCGCCACTGAAACCCCGCGCCCAGCCCGTCTCTCCCGGCGCGATGCCCAGTTCGTACGCCTGGACGCCCGGCAGTCCCCCCAGGTCCGGGACAGTCAGGCACACGCCCTCCTGCGGGGGGAATAGCATCCACCCGCACACCTGCTTGGGTTGCGCGCGGCGCAGCTCGGCGAGGGCCTGCGCTTCGTCCACGAGGCCCGCCTGCAGTCGGCACTGCCATTCGTTCAGGTTCGGTCCGCCCGCCAGGGCCAGCGTCTCGTTGACCCGGCCGCCGCCCGTGCGGCACGCAACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCGGCCTGCCTTCGGGTGGGCCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-15.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 239011-237464 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWE01000005.1 Deinococcus sp. JMULE3 Joined_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================ ================== 239010 35 100.0 34 ................................... GACCATATGCAGCCGTGGGGGTGGGCATCAGTTC 238941 35 100.0 34 ................................... GGCATATCACGGGCGGGCCGGGTGAAGTCATTGA 238872 35 100.0 37 ................................... TTGTGTGTGGCGGTGCGGGTGGCGTCCCCCCGTTCGG 238800 35 100.0 38 ................................... CGCCTACCTCCGATATCGAATGTGTACGTCATGATGAT 238727 35 100.0 35 ................................... GACCGTGAGTGCATTCTTCCAAGTTCCACCGCGCG 238657 35 100.0 36 ................................... CAGATCAGAATAAGCCTTGAAGTGTTTAACCCATTT 238586 35 100.0 40 ................................... AGTCGTAGTCCGCCATGACCCGCTCGTACTTGCTGATGTT 238511 35 100.0 40 ................................... CTGTCCCGGAGGTAGGCGACGGCGTCCCTGCGCAGGGCCT 238436 35 100.0 35 ................................... ACGGAAGGCGTACCACATACCATCCACATCCTTAT 238366 35 100.0 38 ................................... CACGTGTACGCATGCACCCCGTCGAGCGGCAGCGCCTC 238293 35 100.0 35 ................................... GACTCCTCGGTGGGCCAGACGGCCATGTCGCCCTT 238223 35 97.1 36 ....................A.............. TTCCGGGCAGGGGTTCATGGCGAGAATGCTCAGGGC 238152 35 97.1 34 ....................A.............. GCGCTGCGTGCGAGGGTCAGCAGGTCATCCGGGA 238083 35 97.1 35 ....................A.............. ACGATGTGGTGGGTGTGGGCGAGTAGGAAGATGGT 238013 35 94.3 36 ............T.......A.............. AAGCGTGTGTCGGGGTTGCTTAGCGCCTTGGTGAAC 237942 35 100.0 48 ................................... TCGTTCAGACGGACGGCGCCCTGGTACCCGATGTTCGCGGTGAGGATG 237859 35 91.4 35 .......C............A.............A TAGTACGTGTTGTCTCACTTCGTCTTAGGCGGACT 237789 35 94.3 35 ..................A.A.............. CGTCACGCGCAGCTCTGCCGTTTCCACTCCCATTT 237719 35 88.6 36 ....................A....CA......C. AAGATATTGTAAGTCATGAGTTCACGTTTAGCGAAA 237648 35 80.0 42 A.........GG.C...T..A...T.......... TCGCCTAGTCTGAAAATCGCGTTAATTTCCGCTGTAAAGCGT 237571 35 80.0 38 ..T....C.....CG...C.A..G........... AAGCCCAACAGCGTTGAAAGGTAAATCGTGAAATAGGT 237498 35 88.6 0 ....T...............A.....A.......G | ========== ====== ====== ====== =================================== ================================================ ================== 22 35 95.8 37 GTCTCAGAAGCACTTCCCTGGTAAGGGATTGAAAC # Left flank : GTTCACCCGCAGCGGGTCCACCTCCGCCAGCGGGTACCGGGCGTCCGCCACGCGGTACACCCCCGAATCGCCCAGCCGCTGGAACAGCACATCCAGCCCCCGAGCCTGACCACCCCGCACATGCCGGAGCAGCGCCTGCAATTCCTGTTCCATCGTCCACCTTTTCCAGCACCGTTGAAGTAATGCCGCGAGTGTAGACGGCAGCCCCGCAGGCCACCGCCACATCTGCGGTATGGCCCCAACGGGGGGAAAGCGGAAACGGCCCAGGCCACCCGACGGAACGAAAATGAAGATTATACAGATGAGAGCGGAATACCTGCGCCCAGTGGTCATAATTCGTATGCAGCGCTTCCAGAATCTCATTTACGTCCCGCAGCCGACCAGGACAGGCAAAAAGACACGGCCGGACTCTCATGTTCGGAAAATGAATGCATACTCATGACGCGCTTACAGTTCACATGCTAAAAAGAACGTGCTGCACGGGCTCGCCCGAAGGTAGA # Right flank : CGCCCCCGCCTGTGCATTCGGCGGGGGCGCTTGTCGTTGTGCTGGGTTACAGGGCGTCGCTGGGGCGGCGGATCAGTCGCAGCGCGCTGACCTCCCGCACCTCGTGCGAGTTGGGGATCTGCGCGTGGATCGCCTGGAGGTGCGGGTGGTCAGGGGTCCAGAGGGGGTGCGTGACGATCAGGGTGCGGTCGCCCGTGCGGGTGCGGGTGGTGAACGTGGGGACGTGCGGGTGCAGTCCGGCGGGCGCGTAGCCCAGTTGCGTCAGGACGGCTGGGATGGGCGCGTGCGCGCCGGTCACGAGGGCCGCCCAGGGGTTCGGGTGGTCGCCGTGCGGGGTGTGCAGGTCCGGCGTGTGGGGGTCGCCGCTCAGGATGCGGGTCATGTCCAGCGCCAGTCGCCAGTCGAGCAGGGGATGGTAGGTGGTGTTGGCGTGGTCGCGCAGGCAGCGGGCGCAGCTGCTGTCGCAGTCCGGTGCGTGCCGGTGCCAGTACGGGGCGAGG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGCACTTCCCTGGTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 248373-249129 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWE01000005.1 Deinococcus sp. JMULE3 Joined_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 248373 35 100.0 38 ................................... CGCCGTACGTGTCTCCCAGACTTCCGAATCGGGAATTT 248446 35 100.0 35 ................................... ATGTTCAGGGCCCGGCGAATGCGCTCCAGCAGGTC 248516 35 100.0 42 ................................... TTGTAGACCGCGCTGACCATGATGCCACCCTGTTTCCGGGCA 248593 35 100.0 39 ................................... GGATGGCTACAGTGCGGACGGCCTCCCGCTGGAAGTCGC 248667 35 100.0 38 ................................... GCGGCCATCGAGGCGCACTTCGCCATGAAGGAGGCCGA 248740 35 97.1 34 ..........T........................ TCGTTCCCCCTCGGGTCGTGTTTCAATTCCAGCC 248809 35 97.1 38 .....G............................. TCGCGGTTGCCGCCGAGGGACTGTGCCGAAGTGAACTT 248882 35 100.0 37 ................................... GTTAGATTCCAACTTAAGCGCGATATATGCCACGCGT 248954 35 100.0 35 ................................... AACTTCGATCTGGATGCCAACCACAAAGGTCTTTT 249024 35 97.1 36 .............C..................... CACAGGTAGGCGAACATGCTGTCAAATTGACGGTTA 249095 35 88.6 0 ...............................GTGA | ========== ====== ====== ====== =================================== ========================================== ================== 11 35 98.2 37 GTCTCAGAAGCACTTCCCTGATAAGGGATTGAAAC # Left flank : CCCCGCCCCCCACGAGTAGCAGTCCAGCGACCAGTCCTTCACCTCCACGATCAACGCCCCACGCGTCGGGTGCAGCGCCACCACATCCGGCCGCGTCCCATTCAGGTACGGCTGCGCGAACACCTCCCACTCCGGCCCCAGATCCCGCTCCAGGAACGCCAGCAGATGCGCCTCGCCCGGTGTCAGCGGGGTCGGCAGGGCATTCAGAACCGGCCAGGGGGGAATCAGGGTCGCCATGCCCCCCTATGGCCGCGCGGAACACAGACCGGAAGGTGACGGAACGAAAATGAAGGTTATGCACATGAGAGAGGAAATTCGCTGCCGAGACAACGAAATCGCTATGCACGGCCAAAAAATTTTCATCTACGTCCCACAGTCGACCAGGATGGCGAAAAGAGGCCGTTTTCGCTCTCATCTTCAAAAAATGAATGCATACTCATGACACACTTACAGTTCACATGCTAAAAAGACCGTGCTGCACGGGCTCGCCAGAAGGTAGA # Right flank : AAGTCGTTCACTTCCGCTTTCCGTCTCCTGCCGTCACACGGGGGCATGACATCCGTTCTGGTGCAGACTCCGGGCGCGGCGATCAGTGCGCGTGGCGGGCAACTGGTCGTAGAGACGAAGGCGGGTCAGCACTCGGTGCCTTTGGGGCACGTGACCGAGTTGATCGTGGTGGGGCACGCGCGGATCAGCACGGGGGTGATCGTGGATCTGGTGGGACGTGGGGTGCCGGTGCACGTGCAGTCTCGGGCGGGCGCGGTGCCGTTCAGTGTGCTGGGGAACGTGGAAGGTCAGGTGGAGTCCCTGCGGGCTCAGGTGCTGGCGTCGCCGGAGGCGCGGTTGCGGGCGGTGCGGGCGCTCGTGCGGGCAAAGGCGGCAAATTGTGCGTGGGTGTTGCGGCGTCTGCGGGTGCCGGGGCGGCTGGACGTGCCGGACGTGGAGGGCGCGGCGGATGAGGACGCCCTGCGGGGCGTGGAGGGTTCGGTCGCCCGGCAGTACTTCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGCACTTCCCTGATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //