Array 1 16246-17557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIFT010000026.1 Salmonella enterica subsp. salamae serovar II 48:b:- strain HZ279 NODE_26_length_85011_cov_39.204514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16246 29 100.0 32 ............................. ACATCTTAAACCTGTTGAAACGCTGGCGAATC 16307 29 100.0 32 ............................. GTGGCGGCACTGGCGATTCATGACCGAGGGTA 16368 29 100.0 33 ............................. CCTGCCGGATCGGTGTTTATCTATAACTCCGAG 16430 29 100.0 32 ............................. AATCACAGATTCAGGAGGGCAAAACACCGGAG 16491 29 100.0 32 ............................. TACAGGACACCTAACAATTGGGGAGGGGACGC 16552 29 100.0 32 ............................. GCAGTGTCGATTTTGTCGTTGTCCAGCTCGCC 16613 29 100.0 32 ............................. GCGTTATATAATTCGGTTTTGTTAATCGGCCC 16674 29 100.0 33 ............................. GATGTGATCAAAACTTACGGCCGCCCGGAACAC 16736 29 100.0 32 ............................. GCCTTTTTAACATTCTCGACCAGATTATCGAC 16797 29 100.0 32 ............................. CCATTTCCGGCCCGCCGCCGTTTTTGATGCGC 16858 29 100.0 32 ............................. TTGTTGTAAAATCTCTTTGCGAGCCGCGTTGT 16919 29 100.0 32 ............................. ATTACCGTCTGGCAGAACGCTACGCCCGTAAA 16980 29 100.0 32 ............................. GAAATGTTTGCTCAGAAAATTAGGGCAAAGGA 17041 29 100.0 32 ............................. CCAGTTACCCCAACGAATATTAACGTAAGAAA 17102 29 100.0 32 ............................. GCACTTAATGATAGCGTCAAATCTACTCTTGA 17163 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 17224 29 100.0 32 ............................. CCACGGAAAACACGCTGTAGTCGCTGTACTGC 17285 29 100.0 32 ............................. CAATCTTGCTTACATAGCGAGTGTATTTATCG 17346 29 100.0 32 ............................. TGTCATTCGATTCATAGGCACTCTCCGTTTGT 17407 29 100.0 32 ............................. CTGATAGGCGACATTCAGGGGCGTAAGGCGGT 17468 29 100.0 32 ............................. GGATGGTACTGGCGCGCCGAAACTGGGAGGCT 17529 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGCAAATACCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTGCCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCCCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGAGGTAAAATTCATGTTAGGCATTCTAATAGCGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCGGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 105983-104853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIFT010000012.1 Salmonella enterica subsp. salamae serovar II 48:b:- strain HZ279 NODE_12_length_158122_cov_46.555125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 105982 29 100.0 32 ............................. GTGCAGCAGGAATCGGATCTCGCGGCGCAGAT 105921 29 100.0 32 ............................. ACGGCATCAGCATGACCCTGGTCAGTCCGATC 105860 29 100.0 32 ............................. AATCCAGGTTGGTGTGCACTGCAACGCCTTGG 105799 29 100.0 32 ............................. TTGCCACGCTGGTCTACCGGGCCAGTGTCCGA 105738 29 100.0 32 ............................. GCGGCGAGGTGTGTCTGTACACCGACGAGGGG 105677 29 100.0 32 ............................. CGCAAAAATTAATTCATATTATATATATCTGT 105616 29 100.0 33 ............................. GAGAAACACTTACAGATGCTTCAGGAAATTCTT 105554 29 100.0 32 ............................. ACTACGAATATTCAGACGTCGTAGACTCCTAC 105493 29 96.6 32 ............................T TTCACCCGGTTTTTCGTCAAAGTCAATTTGCC 105432 29 100.0 32 ............................. AAGCAAGCTTGCTGAGAGTAAGGCTAGGAAGG 105371 29 100.0 32 ............................. TACGGCTCAGAGAGTGATTTAGTAGAGCTAAC 105310 29 100.0 34 ............................. GGCAGACCCAGCCCGACGAAATCAGACTCCGGAC 105247 29 100.0 32 ............................. ACCAATAACAAACAGTGTGGAATTTGCGCCAA 105186 29 100.0 32 ............................. ACGGTGCAGGGAATTAAATCAGGAGGTGAATT 105125 29 100.0 32 ............................. GGGATGGCGAATTTTGATAGCGAACAGGCTAT 105064 29 100.0 32 ............................. ACGGATCGGGGTCAATATTTGCCCCCTTAATC 105003 29 100.0 32 ............................. TCAGAGCGCTTTCTGTCGCGATTACGCGAGAA 104942 29 96.6 32 ............C................ TGGAATTGCGGGTCAATAACAAGACTTATGCG 104881 29 93.1 0 ...........................GC | ========== ====== ====== ====== ============================= ================================== ================== 19 29 99.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTAGCCGCCGGAGAAATCGAACGCCCTCAACCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAAACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCCCTTTAAAATCAATGAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGTGGTAAAAAAAGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122927-122533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIFT010000012.1 Salmonella enterica subsp. salamae serovar II 48:b:- strain HZ279 NODE_12_length_158122_cov_46.555125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122926 29 100.0 32 ............................. GTGCTAACCCTATATGAGGGACTGATTGAACA 122865 29 100.0 32 ............................. AAAGGAAAAAGCGACAAACGTCACCTTTTCCC 122804 29 96.6 32 ............................T GTTTTACCTTAAATTATATGATATATCAATAC 122743 29 100.0 32 ............................. TTATTAACTAATCTTTGAAGTATTATAACGTC 122682 29 100.0 32 ............................. CGTTCAACCGATTCGTAGCCGAGATACGTGTA 122621 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 122560 28 86.2 0 ....C........C..........G-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACATTTAGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //