Array 1 65140-70040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOT010000015.1 Corynebacterium sp. CCM 8864 GCM70020042_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 65140 36 100.0 29 .................................... ACCGTCACCGTCCACTCCCCCCACGGCGG 65205 36 100.0 28 .................................... CATTGATCCCGATGGACCCCGCTCGAAT 65269 36 100.0 28 .................................... TCCGACGGCCCTCATCGTTGATCGTTGC 65333 36 100.0 28 .................................... CCCACTCGGTCAACATCGACTCTTCGGC 65397 36 100.0 28 .................................... CCCGCGCCTCATCAGCGTAAAAGGTCGT 65461 36 100.0 28 .................................... AACCCCCGCTGCACGAGTTGGGTCAGAA 65525 36 100.0 28 .................................... CTGCCATTCATGTGTGCAACAACTTCAT 65589 36 100.0 28 .................................... AATGCTTGACTCGATTACCCTGGAAGGG 65653 36 100.0 28 .................................... GCCGCGCCGCGGTGTCGCGATAGTCCTG 65717 36 100.0 28 .................................... GATGCTGCAGGCGGCCCGTCTGCCTTCC 65781 36 100.0 28 .................................... TGTCGGAGACGGTGTCGTCATCTTCGCT 65845 36 100.0 28 .................................... TGCGTCTTAAGCCCTTGCGCGGCGCGGC 65909 36 100.0 28 .................................... CCGGACCGGCAACATCGGCACCGCGTGG 65973 36 100.0 28 .................................... CCGTATTGCACGGTATACATGCGGTTTC 66037 36 100.0 28 .................................... CTGCTGGTGAGGATGGTGTCTACTACCG 66101 36 100.0 28 .................................... ATCTCAATACGTGCAGTTGAGTTTGCCG 66165 36 100.0 28 .................................... CTCCAATGTAAGCGGTGGACGTGGGTAG 66229 36 100.0 28 .................................... TCGGGGGTGACTAGTCCGTTTCGTTCGA 66293 36 100.0 28 .................................... TCCGCGTTTCACCGGATCGACCGTGACT 66357 36 100.0 28 .................................... CACGCCGGGTGGGGTACCAGCGGCCGAT 66421 36 100.0 28 .................................... CGGGTCACCGGGCCACGGCAGCGTCATC 66485 36 100.0 28 .................................... TCCCAAAGCGATCATTGTTGATCAGGAC 66549 36 100.0 28 .................................... CCGTCGTCGCTGAAGGCCACAGGGGTGG 66613 36 100.0 28 .................................... GCTGCGAGCTTCGGGTGGAGCATCCCCT 66677 36 100.0 28 .................................... CTTCCATCGCTCACGGTGATACGCCAGT 66741 36 100.0 28 .................................... GCTACAGGCCAGACCAGTTCAGCGGCGA 66805 36 100.0 28 .................................... CCATGTGATCCGCCTCCACAGGCGGGTC 66869 36 100.0 28 .................................... CGCGCGGTGGTCGCGCGCTCACGCGCCA 66933 36 100.0 28 .................................... ATGATTCGGCCACCGTTGTAGGTGTCGA 66997 36 100.0 28 .................................... TGACTAGCGCATTTTTCGCCCCGGGGAT 67061 36 100.0 28 .................................... GTCGCGCACGAACTCCGCGCATGCTTCA 67125 36 100.0 28 .................................... TGTGATAACGACGACGCTGGGGGGTGCG 67189 36 100.0 28 .................................... CCAAGCACGCGCGCGAACTCTCCTAGCT 67253 36 100.0 28 .................................... ATCTCCACGGTGATTTCCGCCGTGATGT 67317 36 100.0 28 .................................... ATGGCGGCTGCGCCTTGTTGTGGGCAGA 67381 36 100.0 28 .................................... GTACCACTAGCGGGACTGTATGTACCAT 67445 36 100.0 28 .................................... ATGGCAAACGGCAAAGGATGCGTTTGGG 67509 36 100.0 28 .................................... GCGGTCGGTTAAGTAGCTGTTTCCACTG 67573 36 100.0 28 .................................... TAGTTCGGGACGCCGGGCCAGTGCCGGG 67637 36 100.0 28 .................................... TAGTGCGCGGGGTGACGAGGGCCCGCGC 67701 36 100.0 28 .................................... CGTACGTGTCAGTTGATGAGCACGATTA 67765 36 100.0 28 .................................... CGACGCCGCCGAGCGTGCACATCCGCGA 67829 36 100.0 28 .................................... CCGAGGGCTTCGCCTTCTTCTCCGTTTA 67893 36 100.0 28 .................................... GCAGAGATTCGCCGTCCAGCATGGCTTT 67957 36 100.0 28 .................................... CGGTTAGCCATGCGCTGTCCTGTTTGAC 68021 36 100.0 28 .................................... GTGGTTGTAGGTGAACACCCCCATCTGG 68085 36 100.0 28 .................................... CACCGGCCTCCGGCCTGACGAACGTCGA 68149 36 100.0 28 .................................... GGAGCAGTGCATAATCAATGAGCTGGCG 68213 36 100.0 28 .................................... ATACCAGCGTGACCTGCGAATCGTCGTG 68277 36 100.0 28 .................................... CTAACGGTGAGCGTGCGGCGATGTGCGC 68341 36 100.0 28 .................................... CACCCTCAGTCTGTGTGTCATGTGTTTT 68405 36 100.0 28 .................................... CTAAAGCCAGTCACGGACTGATTGAGGG 68469 36 100.0 28 .................................... CTACGTGCACGAACATGACGAGCACGGA 68533 36 100.0 28 .................................... AACCTACCCCGGTTTCAAGGTGGTGCGT 68597 36 100.0 28 .................................... CCAAGCACGCGCGCGAACTCTCCTAGCT 68661 36 100.0 28 .................................... ATCCACGTCAGTCAGTTGCCCATTCTCC 68725 36 100.0 28 .................................... TCATCTTGGGTTCCTTTCCGCCGTCCTG 68789 36 100.0 28 .................................... GGATGGCAGGCGGTCGGATACCTGACCG 68853 36 100.0 28 .................................... TGGACGAAGGGCTCACACTCCCGACCGG 68917 36 100.0 28 .................................... TCCCTCTCAGCCTGACCGCGATAGCGGT 68981 36 100.0 28 .................................... CACATGATTTCACACCACATGTTCGCCG 69045 36 100.0 28 .................................... GATTCCGATGCGATTACATCCTGATTCG 69109 36 100.0 28 .................................... ACGTCGTGACACGAAGCACTTCTCGATC 69173 36 100.0 28 .................................... GCTCTACGCAGACTTGGCGACGGCACCG 69237 36 100.0 28 .................................... CGGGATGGGGACGATCACGAGCTGGCAT 69301 36 100.0 28 .................................... AGCGTCACGTTAGATACATAGGTGGCGA 69365 36 100.0 28 .................................... CTTCCATCGCTCACGGTGATACGCCAGT 69429 36 100.0 28 .................................... GGGTGTAGTCCTCGGTGTCCTCGTCGTA 69493 36 100.0 28 .................................... AAATCCACGGTGATTTCCGCCGTGACGT 69557 36 100.0 28 .................................... TGCTCGTGCCTTCCTCCATCACACCGGT 69621 36 100.0 28 .................................... CGTGAGCAGCAGAAGCGCCGCGAGTCGG 69685 36 100.0 28 .................................... GAGGATCGTCAGCATCCGTGCCCTGTTG 69749 36 100.0 28 .................................... CGGTAGAATCGCACCGTTCCGCCTGGGT 69813 36 100.0 29 .................................... TGTTCGCCGCAAACCCCACATCCCCATAG 69878 36 100.0 28 .................................... ACTACGACATCACCGCAGACTACGGCGT 69942 36 94.4 27 .................................G.A GGCATAGGTCTCGGGGGTTCATTTCGT 70005 36 83.3 0 ....CGC.......T..GC................. | ========== ====== ====== ====== ==================================== ============================= ================== 77 36 99.7 28 GAAGTATATCAGGGGTAATGAGAAATGAACCCCAGC # Left flank : TTTTTGATGGTACCGGGGAGACGATCCCGACTGTGCTCACGGCTTTCTGTCAAGAATACGGGTTGTATGTTGAGGCAGATCGGAAAACACTCGAGGTGCCTGTGTGGTGGGGTGAGTTGAATGCCCGCGAAAGGGAGTGAGCCGGTGTGGTGTCTGGTGATGTTCGATTTACCGGTCAAGACGAAGGCACAACGATCAGCCGCGACCCGCTTCCGCAATGAGCTACTTGACCTGGGTTTTTGCATGGCGCAGCTCAGTGTGTACGTGCAGTATCTTCCTCTAGCTGCTCGGTTAAAGCAGATCGTGACTGCAGTTAAAGCGGCGCTACCGCCAGGAGGTGATGTACGGGTCGTGTCCATCACGGACAAGCAGTGGTCCAGAGCTATCCGTTTTTCGAGTGCTGTGCCTGAAAAACAGGAAGATCAGCCCTCACAGCTCACGATTTTCTAGCCTACCGGCCCGCTAAACATGCAGGTCATACAACATTTTTTGGGCGCACC # Right flank : CTACAAGGCTTTACGCTTCGTTTACCATTATAAAGAACGTTTGAAATTGGGTCAACTTTTGGTCCGTGGTGTCCTAAATGGGCGTAATTATAGTTTTCGATTGGTTGTTCCTATTGCTTTATCTAGTGGGAAATTATCCCTTTAATGGTTGTAATTCATGTTAAATCGTTAAGGGGGTTGTGTCATTATTATGTGCTTTTTCAAGGGTCTGTCTTCTGTGTAAGGATAATAGGGATTAACTGCATAAGTTAAGCATGGGCGGTTGTCTGGGGTGGTGAAAGTTGTGACATTGGTTAGTTGAAGTGTATGTAGCCGGATAGTCCGCCGGAGGGCTTTACTTGATTCACGTGATGGTCGCGGCTGCAGTTACTGGAAGAACCATGGATGTATTCGGTGAAGGTTATGATTTTGGAGTCGGCAAGCGCCTAACGTCTGCGTGTGCCATGCTTCACGTCACCGTGTCATCGCGTCATACCTGAAACTCGTGGGTTTTCAATCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTATATCAGGGGTAATGAGAAATGAACCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 80807-80957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIOT010000015.1 Corynebacterium sp. CCM 8864 GCM70020042_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80807 29 100.0 32 ............................. CGCCTTCGATACTGTCGCCAAGTTACACAATG 80868 29 96.6 32 ............................C GAAGGTTGATCTCGGCTGACGATGATCAAGCT 80929 29 93.1 0 ........................T..T. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTTGTCCCCGCCTGCGCGGGGATGGTCCT # Left flank : TCCGCGACAAAGGAATCACAGACCTCGACATCACCGGTATAGCCACCGACTACTGCGTCAAAGCCACCGTCCTCGACGCCCTCAAAGAGGGCTTTACCGTGCGGGTACTCACCGACCTCTGCTCACCCGTACACCCCGACACCGAAGCGCAAGCACTCACCGACATGAAAAACGCCGGAGCCGAGATCGTGTAGTGCCGCACCACCTGAGACGGGACGACACCGGACCCGTATCAGTGGGGAACCCGAGAAACCGGGACGACCACGGCACACGCGCATTCTTGCGGCCTGGAACATGGTGCTGAGGAACTGGCCGGTCTGGAACATGATGTCCTCGAACCAGAGCCTGCGCCGAGCCTTCATCTCTCCAGGGCGATTACATGCGCCGATGTCAACGAGACACCCACAATCAGGGTGGCGGAGAAACCGGATGCGGGGAACGAGAAAACCCAAGTGAAGGTAAACTGGCACCCGGACCACTGTTTCCGCTGGTAAAAAAGC # Right flank : TTTCAAACTATCAGGGGTAATGAGAAACAACGGCAGGCCAGAGAATCACCACAAACCCCATCACACCCCATTACGCCGGCGGAAAACCCCGACGAGTCCTCAACACCGACTGGAATCTGCATCTGCCCGCAGCATGGTGTCTGGATCGTGAGGGCTAATCCCACGAGCTATTGGTTTTCCGCGTTGCCTGGCTGTGTGGTTCCCTATTGTGGCATTCGCCAGTTGCCTCGGGGCTACTTCCGTAGGGCATCTAAGACAACGCCGAGTAATTCCCCTGAGACCTGTCCTCGGAAGTGATGTGGATAACCGTCCGAGAGTCGGGAGCCTACCTACCGGAGGGCTTGCGTCCGTTCCTGGCCAGCGACTCCGTAGCCGGTAACTCCCATCGAGTAAGACCGTTGATCGTTTTCTGGACGACTTTTGAAGGCGCTACGGCGTAGGCGGCGTTGCGGAGGCGGGCGGTCACCGGGTTGGCACTCTGGTTTATGAATCCTGTTCTC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCCTGCGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCCTGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //