Array 1 77465-78226 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJTA01000035.1 Clostridium sporogenes strain PA 3679 isolate FDA VT91_contig036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 77465 30 100.0 40 .............................. TGATTTAGATAACCGCTTTTATTTATCCATTCTAGTGAAG 77535 30 100.0 34 .............................. CAAAGTAGACTACCAAAGGTTTGGCTTTCAATAA 77599 30 100.0 36 .............................. TCAAAGACAACCATGTCTGTTGATTCATAATAACAA 77665 30 100.0 37 .............................. TTTGCTTTAGACTGTAGCCTTCTTCTTCTAAGGTATC 77732 30 100.0 37 .............................. TTGTATAACTTTTCTCTTTCTTGTCTTTCTTTTTCCA 77799 30 100.0 37 .............................. GATTGTTGCTCCAGTTGTTTTTGTATTTGCAACCACT 77866 30 100.0 36 .............................. CTAAATTTTATACCCTTAAACACTGTTTCTAATTTA 77932 30 100.0 36 .............................. TTCCTATATAATCATTAGAATTTAATTTTTCTAATA 77998 30 100.0 35 .............................. TGTACATACATTTCATGTGCTTTAGAGTATGGAAC 78063 30 100.0 37 .............................. AATATATTAAAAATAGATGTGCATACAGTTACAGATT 78130 30 100.0 36 .............................. TTGCACGTCCCATAAGGGTACTGATATCAAACTGTT 78196 29 80.0 0 ........A........T..A.-.AA.... | AC [78201] ========== ====== ====== ====== ============================== ======================================== ================== 12 30 98.3 37 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CATAGGCTGATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTATAGCGTCTTCCTAAAGTAGGCCCCGTTGAGGTTACACCATTTCTAAATTCAACTGAAAGTTTATCAGTATTAAATTTGTTCATTTAATCCCTCCCCATACAATACGTTTTATACAATATTATATGATAGGATTTATGAATTTAGTATATTTATATATAAATCAATTTTAATTATAATATTTAACTTAAATCTTGTACCAGATCTTGTACTACCAATAATATATCAGCTAATAGTACAAATAAAATATTTTCATATTAATTGAATTTTTCCAGGCACAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGGTTCTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTCTACGAAACCTTGTAAAATCAATGGGTTTATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTAATATGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCAAAGTTTTAGAATAGAATATAATTAGTTAATTAAGTTTCTATTAACAAAAACAATAATACTTTTAAAATATAAATAGAATAATTGATTATATTGATTAAAGGGTATATGTTATAATATAGATAAATTTGTATAAAGAGGTATATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGATCTTGGCTGCAAAATAATGGGGATTTAGATTTATCTACGGGTAGATTAGAAGATAATTTGGAAAGGAAATATAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAGAGAGCATAGAGTTTAAGAATAGAAAACCAATGCATTACAACTATAAAGGTATAAAATTATTAGCAAATAAGGTAAGTATACAAGTGAAGGATAATGAAGAAGAACAGAAGGTGGCTTTCTTAGCAAGAGCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 82435-82726 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJTA01000035.1 Clostridium sporogenes strain PA 3679 isolate FDA VT91_contig036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 82435 31 100.0 33 ............................... ATATAAATGAATTTGATTCTAGTCCTGCGTTTA 82499 31 100.0 35 ............................... TATTATTTCTTTTGATTGTTAGTTTATTCATTTTA 82565 31 100.0 34 ............................... AGGGTTAATGAAAGTCAATCTAACGAATCATCTG 82630 31 100.0 35 ............................... GTTATTGCTAAGGTTGGATTAGTTATTTGACTAGG 82696 31 80.6 0 AA.......G..............C....TC | ========== ====== ====== ====== =============================== =================================== ================== 5 31 96.1 34 TGTTGAACAATAACATGAGATGTATTTAAAT # Left flank : ATAAAGGTTTTGTTTTAAATACAAATGGACAAGAATCAATCATTAATGCTGATAGTGCCGTTGTGGCTATTGGATATTCATCTGAAAAAGACTTATATAATGAGGTTAGATTTGATATTCCAAATGTAAGACTAATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATATACCTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTTGTTCTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTGTGTATATTTAAAATTTTCCAAGTGAATTTAAAATTAAAATCTATTCTAGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTGTTTTTGAAAAATCAAAATCACATGGAAAAATTTATATAAAACCTTGTAAAATCAATGTTTATATGATATTCTTAGAAATAAGGAATGGGTATTTTACTAT # Right flank : CAAGAAATGCAATTATTTGATTTGGAATAATCATTTATATATGGGAATAATTTTTTGTTTAGTACTTCTTTGGATTAAGGTATGGGATTTTTATTGACTAAAATATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAGCCCCCATTAAAAGAAGTTAAATATTTTTCTTTTAATGGGGGCTATATAAATTGCTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCGTTTGTTATAAGAGACAATAATATCACCGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTGTTATAATTTTCTTCCCCTAAATTTTCATTTGTTTTATAGTTAACGGTTATTTCATATGGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 4396-9142 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJTA01000023.1 Clostridium sporogenes strain PA 3679 isolate FDA VT91_contig023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 4396 29 100.0 35 ............................. AAAAATAAAGATATGTCTTTTGAGAAGCTCACAAG 4460 29 100.0 37 ............................. GAATAACCTCTTCGTTATACCCCTCAATCCTTGCTTC 4526 29 100.0 38 ............................. TCTTTTTACAATGATGATGGAGAATTAATTAAACTACA 4593 29 100.0 36 ............................. TTAAACTAATAACAATAGTATTTATTACAGACTTGT 4658 29 100.0 37 ............................. TTTGATGAAAATATTTTGATTGATTTATTTTCGTTCA 4724 29 100.0 38 ............................. ATTGTATGGTGTCAGGAAAATGGTATAGAAATAGAAGG 4791 29 100.0 37 ............................. AGCGTTTGTTTATGTTGGCCCTACCAGGAGTGGTAAA 4857 29 100.0 37 ............................. AAGTCTAGGATATAGGGTAAATAAAGCAAATAATTAT 4923 29 100.0 36 ............................. AAATTTTGGGATGAGAAAAGAAAAAGGTATGTGCTG 4988 29 100.0 37 ............................. TCAGACAGCTTATTATTAATGATTTGAAAATCTTTAT 5054 29 100.0 38 ............................. TGCGTTATAGTTCAATTTTACGTTAATTAACGTAATAA 5121 29 100.0 37 ............................. ATTCTTTCTTGTTATTGGTTTATATTGAGCATCTCCT 5187 29 100.0 36 ............................. TTATTAGACTGTGCTAATTTTATGACTGTATCTGTA 5252 29 100.0 36 ............................. TATTGTGTAGTTCCTTGATATGGTATATCACAATAA 5317 29 100.0 37 ............................. TTACACCATTTTGGTCTATATAAAATAGTTAAATCTC 5383 29 100.0 37 ............................. TTAGAAAAATATATGTATTTAAGAAAGATAAGTGAAA 5449 29 100.0 38 ............................. ACATGGATCTAGATAAAAAAGCAAGTAGTGCAATGATG 5516 29 100.0 36 ............................. TTGAAAACCCTTCTTTTTCATATTTATCAAAGCACT 5581 29 100.0 38 ............................. TTGGGATTTTGGACACATCAAGATGTATTACGATATAT 5648 29 100.0 36 ............................. GACGAATATTCTAGTGTTTCTATTTTTATTCCTTGC 5713 29 100.0 37 ............................. TCTTCAAAAGTAATATTCACTTTCCTATCATCTTCAG 5779 29 100.0 35 ............................. GTGGCAGGGAGTGGGGCAACACTAAGAGCTTGCAT 5843 29 100.0 36 ............................. AGTGCTTTTCGTGTTTTTAAATTTATTCCATTTGCT 5908 29 100.0 36 ............................. TATAATCAGCATATCTCATTATTATTTTTGCATTTT 5973 29 100.0 37 ............................. TAAAATATTTTAGAATTATCTCCCTTTTGTATTCCAG 6039 29 100.0 38 ............................. ATGATAAATTAATTTATACAGATGATGAACTTATGACA 6106 29 100.0 36 ............................. TATGTCTACTTGCATATAAAACCCTGTAGCAATTTC 6171 29 100.0 37 ............................. TAAAATTGATTATAGTAATGAAAAAGAAGTAGAAACA 6237 29 100.0 36 ............................. TAGGCATATTGGAAAACAAAGATAAAGTAGAAAGCG 6302 29 100.0 37 ............................. CTCAATTCTGCTTGTAATCCTTGCAACATTTCCTTAC 6368 29 100.0 37 ............................. TTATTGCTAGAGGCATATACATTAAATGTATTATTTC 6434 29 100.0 35 ............................. ACTCTATGTTTAAACATACCAGACCACTTATAAAA 6498 29 100.0 38 ............................. CAATTCTCATATAATAGTGGTTAATCATATTAGCGAAG 6565 29 100.0 36 ............................. AATATATTATCTGTTTTAATTCCTAGCTGTCCTGCT 6630 29 100.0 37 ............................. TGGGTATTGGGAATTGGTGCTGCAACAGTTGCTGGAG 6696 29 100.0 37 ............................. TTTTAACATTATATAGCCCTCCATTTATTTGTTTTAT 6762 29 100.0 37 ............................. CAAAACAATCAAAATTAACATAAAATTTAAACATTTT 6828 29 100.0 37 ............................. GTAGAAGCAGATAAAAACTTAAAGGAAATAGAAAATC 6894 29 100.0 38 ............................. AAGAAGAGGAGGTAATAAAATGATAAATAAGTCAAAGA 6961 29 100.0 36 ............................. ATGTATAGAGATTTAGGGAATAATAAAAGTGTTCAA 7026 29 100.0 39 ............................. ATATATGGGAAAGGTTCGGAAAAGAAATAGACGAATATA 7094 29 100.0 37 ............................. TAGCTTTGTTATAACATATTACTTCCATTTTACTATC 7160 29 100.0 37 ............................. TTAGCAGTTGCCATTTGAGGATCATCTACTAACTTAA 7226 29 100.0 37 ............................. TAGTATTTACTAATTGCTCTTTTGAACCAACATTTGG 7292 29 100.0 38 ............................. ATACGTAAACCAAAATTATTTTGATTTAATTCCATTTC 7359 29 100.0 37 ............................. AATGCAGATGCTATTAACACGTCTATAAGAGACCAAA 7425 29 100.0 37 ............................. TAATATTATTTCGTGGAAATATAATTCATGAAATATA 7491 29 100.0 37 ............................. TTAGTGAAAACAATAGCATATGTATCAGCCACTTTTG 7557 29 100.0 35 ............................. TAATATTATTTCGTGGAAATATAATTCACGTAAAG 7621 29 100.0 37 ............................. ACGGCAGTACCTAATATCTCTGAATAAGCTTTATCTA 7687 29 100.0 35 ............................. CTGGTTACAATAAATTCATTTAACAAAACGGCATC 7751 29 100.0 37 ............................. GCAAATGGAGAAACAGTTATATGCTTAAGTTGGTATT 7817 29 100.0 37 ............................. GAAACTACTTTAATATATGCAGATTTAAATCAAGAGA 7883 29 100.0 38 ............................. TAGAGAAGATAGCCAAGATTATCAATGGATTAGTACAG 7950 29 100.0 36 ............................. GGATTATATAATTTTGCTATAAATAAATTAGGATAT 8015 29 100.0 36 ............................. ACAACTAGATGTTGGAGATAATTTATTCCGTTACAA 8080 29 100.0 36 ............................. ACATAGTTATAGCAACAGTTACAATAGTATCTTACG 8145 29 100.0 37 ............................. AGTACTTATTTATTGAGAACGTTAAAAACTTACTTAG 8211 29 100.0 37 ............................. GTATTTACTTAATAGAATATATGGTAATCCCACTAAT 8277 29 100.0 37 ............................. GCGACAGGCTTACAAGTAGTTGCTGTAGATGGTGATA 8343 29 100.0 37 ............................. ACATATATAGACATAGAAGTAACAATAAACATAAAAC 8409 29 100.0 38 ............................. GTAGCTTTATATATAAAATATGATGAAGTCAAAAGTAA 8476 29 100.0 38 ............................. TTTTCTAAAAAGCAAAGGAAAGTATTGAATTGGTGGAC 8543 29 100.0 37 ............................. GAAGAAGATTTATTATTAGCTAGAGCATTAGCTGATA 8609 29 100.0 36 ............................. AAATCAATTTGATGCTTTAGTATCTATGGCTTATAA 8674 29 100.0 37 ............................. AAAAATTCAATTAACAGATGAAGAAATAAATAGATTT 8740 29 100.0 38 ............................. GATCTAAACAATAATGTAACCTATGAACTTAAAATAGC 8807 29 100.0 82 ............................. AAAGGAACACCAATATATGCAGTAGCAGATGGTACTCTTTTATATTAACCTAGAGATTTTAATATAACAATTAGAACAAATA 8918 29 86.2 37 A...........T......G...A..... AGCAGTAAAGAACTTATATTAGAAGAACTTATAGATG 8984 29 96.6 37 A............................ AACTTCATGGAAGAGGTAGGAGGTTATGTATGGGATG 9050 28 93.1 36 ...................-G........ TAGCTTTTTTATTTCTAACTCCGTCTTCCTGTTCTG 9114 29 75.9 0 A...............AG.TGG..C.... | ========== ====== ====== ====== ============================= ================================================================================== ================== 72 29 99.3 37 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTAACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTAGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGTCTTTCTGATGTTAATAAATTAATTGACAAGAAGCTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTAGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAATTTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGCTTTTTGAATTTTAGG # Right flank : TGTAGATCCTATAGCATCAATTGGATTTAAGTCAATATAGTAGACACAAAAACACGAATTTTTATGCAGTTTTCTTTAAAGAATCTTCAAGTTGTTGTGGAGTCATGTAACCAATACTGCTGTGAAGTCTTTTTCTGTTATATCAAGATTCTATATACTCAAATATTGCAAATCCGGCGACATCAAAATCATAATATATAGCTAAATTTACTTCTTCCTTCTTTAGCGAAGTGTGAAAGGGTTTAATGTAGGCAGTATCATAAGTGATTTTAATAATGTTAGAACTAGACATTATACTGTGAAAGGGTTTAATGTAGGCAGTATCATAAGGACAATCCTTACCGCTGAAAAAAGTGAATTATATTAATTCCTTTAAATATGTTTAACTGTTATCAAGCTTAATTTAAGAGTTTTGGAAAGATTTATGCTAGACTGCTGTAAAATTAATAAAGGCAGAAAGAAATCTGCCTTGATTTTATCCGTTTCTATAAGTTTGTATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9409-7677 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJTA01000085.1 Clostridium sporogenes strain PA 3679 isolate FDA VT91_contig087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9408 30 100.0 34 .............................. ACTTATAATTACTTTTGATTTTAAATCTCTATAA 9344 30 100.0 36 .............................. AAGAGTATTTCGAAGAAGTCAAATCCTTTATTTGAT 9278 30 100.0 36 .............................. CAAGATTTGCAGTATCCTATATTTTCTGCTATATAA 9212 30 100.0 36 .............................. GGAGATGTTAAATTCAATGTCTTATCACTAACATGA 9146 30 100.0 36 .............................. GCATTATTTTAATTCTCCTTATTAAATTATTTTGAA 9080 30 100.0 35 .............................. GCTAACATGGTTATAAAGCTTCAAAGTAAATTAAA 9015 30 100.0 36 .............................. TTTCTGTTATATCTTTTTCGTTTTGGCAGGCCTTAT 8949 30 100.0 36 .............................. AATATAACTTTCACATTAGGAAATAAGTTTTTATCT 8883 30 100.0 35 .............................. GTTATTTCATTTAAATTTAACCAGTATTCTATTTG 8818 30 100.0 35 .............................. TAGTTAAAATGTGAATATCTCATATCGCCTACTAT 8753 30 100.0 37 .............................. ACTTTTTCAGTACTTATTTTGTATCACTCCAAACTAA 8686 30 100.0 36 .............................. TTATTGTATTCAAGACGCTTTCGTCGAAAAAACCTT 8620 30 100.0 35 .............................. GGAATCATTTCTATTTGTTTGGGCTTGGCTGGTGT 8555 30 100.0 36 .............................. ATGCATCATCCCCGTGATCATTTTCTTTAACTGGTT 8489 30 100.0 34 .............................. TTATTAGCTTTTTCTGGACTAGGAGGTTCATTAA 8425 30 100.0 34 .............................. GGTATTACAACTTCGTGTGGAATTTCCCACTTTA 8361 30 100.0 34 .............................. TCACTTTCTTGTTTGTATGTCCATTTAACAGTGC 8297 30 100.0 35 .............................. CTTCTTAGCTTGTTTACCTTTGTTTTTCTTAGCTT 8232 30 100.0 36 .............................. TGTTTACGCTTTTGAGGTATTTCTTTTTTAGATCCT 8166 30 100.0 34 .............................. CCAGTTACACAAGCATGGTCCTTATCTTTGACTG 8102 30 100.0 35 .............................. GAAGTATTATCATATGTTGAATTAGCACTTGGTAA 8037 30 100.0 36 .............................. GGTATTCTTCTAACTTCATCTCCTGTAAACAATCTT 7971 30 100.0 36 .............................. ACTACTTTTTGAGAAAGTTTTCTAGTTAAACTTTTA 7905 30 100.0 37 .............................. AGGAGTTGAACTTGTAATTGTTCCTAGCAGATGGTGT 7838 30 100.0 37 .............................. ATTAATTTTAGTATGTTAAGTATTTTATCTGCTAAAG 7771 30 100.0 35 .............................. TGAAGTGCTCCTCTTAACTTTGTAGCCAATACTAT 7706 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.8 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ATAGGAAGTTATCGTTTGTTTGGAATAAAGTTTACAAGTTGAACATTAACATGAGATGTATTTAAGTAGCGAACTGTGAGTCACTTACTCCTTGGAGGCAACGAGAAGGAGTTTCATTGAGTGATTAGACATTTAGTATTTTAAGTTTAGGCATGATATGAACCCAATAAAATAATAATTTAAGAAATGAAAAGTATGATTTATAAATTTATTAGCTTAAAGCAGCTATTCTTAATGGAATGGATGCTTTTTTTAATTGAGCTTTGTATAAATACAAATAAATCTAATTTTAGTGATTAATCAGTCTGATTATAAGTAAAATGTTTTTCCAACCACATTTAATTTTAAAATATACCTTAACCCTTGAAATATAAGGCTTAAGGTATGCTTTATTAAAATTTTATAAAAAATGACAAACGGTTGGGAAATTTTCTTTAAAACCTTGTAAAATCAATAGTTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAGCCCAAATCTACGATTTGGTGTGAATCGCTTACTACTTAGAGAGTGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAACTTCTATATAAATTATTAGATAAAGGGAGATTTTATGAAAAATAAAGTTACTAATAATTTAAATTTTGTTGCAGCAATATTGCTTGGAATTGTGGCTATGTTAAATTTTTTTCAGCATAAAACATTGCTGGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTTAGTATTTAAAGGGGATAGATAAAATAATTTTTGGTAGCTATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAAGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 23456-22152 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJTA01000085.1 Clostridium sporogenes strain PA 3679 isolate FDA VT91_contig087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================== ================== 23455 30 100.0 35 .............................. GTTTCATAAGCCATGTTTTTACTTGGATTTCTTGC 23390 30 100.0 34 .............................. TTACATAATCTAACAGCACCATTATTCACTTTTA 23326 30 100.0 35 .............................. AGTTTAGCTGGTTTCTATGCTAAAAAAGCAGAAGT 23261 30 100.0 37 .............................. TATATAGGATAAAGGTTATATGTAGATTCAGATACTT 23194 30 100.0 36 .............................. TTTCAACTCCTTTTTCGCCTTTAAAAAAGTCTTTTG 23128 30 100.0 37 .............................. TCTGTAAAAGTATTTAATTCCTTATCCCACATACCAA 23061 30 100.0 34 .............................. TTAAATAACTTATATTTAACGGAACGTAAAAACT 22997 30 100.0 36 .............................. AGAAAAAACAGAGAAGTTAATAAGCCAATTTAAAAA 22931 30 100.0 36 .............................. AATATATCTGCATTTTCTTTGGTCTTACACACATTA 22865 30 100.0 36 .............................. ACTTTATAAACAAGCTGGAAATAGTATTGTAAGTAA 22799 30 100.0 37 .............................. ACAACAGTATTTCCCATAGCTTTTAATTTACTTATTA 22732 30 100.0 36 .............................. GCTAATATTAATATAAATCCTTCATAAGCTTTTTTC 22666 30 100.0 36 .............................. GTTGCTCCATCATTTATAATTACAGCATCATTTATA 22600 30 100.0 35 .............................. CTATTCCACTTTTTTAATTCTGTTATATTACATTC 22535 30 100.0 36 .............................. TCTTTTTACCCTCCAATATTTGTATTGTGATACTAA 22469 30 100.0 37 .............................. TATATACCTCTCACACATACCTGTATATGAGGTACAT 22402 30 100.0 36 .............................. AGATTTAGCCCTAATATGACTAGAACACCAGAAGGT 22336 30 96.7 37 ................G............. ATAGAATAGTACACCAATATTTCGATGATTGGGATAA 22269 30 93.3 58 ......C............G.......... TGTATTAAAAAAGATAAAATATTTAGCAAAAACATGGTGGTATACTTGAAGTGCTAGA 22181 30 73.3 0 ...T.TG.A..TA..C............G. | ========== ====== ====== ====== ============================== ========================================================== ================== 20 30 98.2 37 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : GCTTTGGACAGGTTTGTTTTAGATATTTATTAAAAAACGTAATCACTTAGAAAAATTTTTTTCAAACCTTGTAAAATCAATGGGTGTATGATATTCTCAAAAATAAGAAATGGCTATTTTGCTATGGTTGAACAGTAACATAGGATGTATTTAAATTAACTGAAGCTTCTGTATAGTTTCTTTTCACTACGTTAAACAATAACATGAGATGTATTTAAGCAGGGAACCCAAATCTCTAATTTGTCGTGAGTCGCTTACTCCTTCGAAAATGATATAAGGAGTTTCATTAATGAGCATAATGTATATCTTATATTTAATTAAATTTTTCCAAGTGAATTTAAAATTCAAACCTATTCTAGCCATTGGTATATAAGGCTTAGAATAGGTTTTGGTTATGTGTTTATTAAAAAACGTAATTACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATGGATATATGCTATTCTTAGAACTAAGGAATGGCTATTTTACTATG # Right flank : GAATTATTGATTATAATAAAAAATAAAAATAGGAGTATTTAAATTTTTACATTTGTAGTGTTGCAAAGTACATTGTTTTTATAACATGCATTGAGATTTCTAATATATAATAATTAGGATTTTTAAACGTTAAGATTTATTTAACTAATAAAACCTGTATATTGTTTATTGTAAGTAAAACCGTAACATCAATATGTATTTAAATTTGCAATTATAAAATAAATATATACAGGTTTTCAAAAAAATACAAAAAGGTATTGTAGTATAATCTGATTACTATTATAATTTTATTAAAGAAATAAATAACGTCATTGTAATTATAAAATAATTATAATAAATAATAAGATATTAACTAACAAAAGAAAATAAAAAAGAGGTGATAATAGGAGGGTGAAAAACTATGCTAAGAAATCCAAAACAAGAATTACAACAAGTAGTTAAGTTTGCTAAGAAAGGAGATAAAAAGGCTAAAGAAAATATATTTATGAGATTTAAACCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //