Array 1 3426487-3427430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010150.1 Escherichia coli strain D7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3426487 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 3426548 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 3426609 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 3426670 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 3426731 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 3426792 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 3426853 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 3426914 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 3426975 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 3427036 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 3427097 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 3427158 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 3427219 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 3427280 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 3427341 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 3427402 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3453130-3454988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010150.1 Escherichia coli strain D7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3453130 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 3453191 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 3453252 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 3453313 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 3453374 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 3453435 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 3453496 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 3453557 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 3453618 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 3453679 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 3453740 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 3453801 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 3453862 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 3453923 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 3453984 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 3454045 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 3454106 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 3454167 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 3454228 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 3454289 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 3454350 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 3454411 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 3454472 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 3454533 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 3454594 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 3454655 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 3454716 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 3454777 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 3454838 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 3454899 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 3454960 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //