Array 1 76174-78840 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMZ01000060.1 Xanthomonas vasicola pv. vasculorum strain Arg-1A Arg-1A_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 76174 31 100.0 34 ............................... GCAAGTCGTTGCGGTGGGTACGCTCGATGCCACG 76239 31 100.0 36 ............................... ACAACATCGCCAGCCATAGCAATTACACTTGCTGCA 76306 31 100.0 36 ............................... ACGTCAATCCCGCCCTCAAGGACAGGAGTCCTGCCC 76373 31 100.0 34 ............................... TTGATTACACCCTGCAACACATCTGCACCCATCC 76438 31 100.0 33 ............................... TTCTAATCCCGAAGAAGTCCTCGAAATCCACCG 76502 31 100.0 35 ............................... GGGCAAGAACTGGGAGCCCAAGGAGGTAAATGGCA 76568 31 100.0 33 ............................... ATAGTCATCAATGGGTTGCCCAATGGGCTCCAT 76632 31 100.0 33 ............................... ACCCGAATAATCCAATTCTGTGCTGGTCTTGCC 76696 31 100.0 35 ............................... CGGAATGCACCAGTGTGGAACCAAGGGAATGGCCC 76762 31 100.0 34 ............................... TGATAGCCCGTCACAGTAACACCAACACTTGATT 76827 31 100.0 34 ............................... TGCGACTTCAGGGGCCGCAAGTACTCTATGACCA 76892 31 100.0 35 ............................... TTGGTAGCTGTTATCTCGGTACAGAGGCATACCGG 76958 31 100.0 35 ............................... TCTCTATTGGTTGGGCTTGCGTCGGTTGGGTTACT 77024 31 100.0 35 ............................... CCGACGAACGCATACAACAGATCGCAAAGATCGCC 77090 31 100.0 37 ............................... GGTGTCAGTTGGCCGTGCCATTAGGCAGCCTCCGCGA 77158 31 100.0 37 ............................... TTTACGCCTGAGGGCAAGACCATCGAGCAGTGCGATA 77226 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 77291 31 100.0 35 ............................... CGCCGGTATGCATCCTTTGCAAAAGTCATTACAGC 77357 31 100.0 36 ............................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 77424 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 77491 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 77556 31 100.0 35 ............................... ACCATTGTGCTCATGTAGGTACTACGGGCGGCACT 77622 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 77689 31 100.0 34 ............................... TCAGCCGGCAAGAGACCCATATCATCCAATTTGC 77754 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 77821 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 77887 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 77953 31 100.0 36 ............................... ATTGTCGTGATCGCCAAGGCTGTTATCCGCGCTGTA 78020 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 78086 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 78152 31 100.0 35 ............................... CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 78218 31 100.0 36 ............................... CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 78285 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 78349 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 78416 31 100.0 34 ............................... ATCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 78481 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 78546 31 100.0 36 ............................... CGCTCTTGGTGTATTCAGTTACGACCGATGCAACAG 78613 31 100.0 34 ............................... TATGCACACTACTGGAAGGGTGCACATAGCCCGC 78678 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 78744 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 78810 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 41 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : TGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGGTGTCACCAGCACTTTTAATCTGACCCACTTCAGCAACTTCAAACTGACCCACCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55188-53711 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMZ01000076.1 Xanthomonas vasicola pv. vasculorum strain Arg-1A Arg-1A_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 55187 31 83.9 35 ..T...TTGA..................... CAGTGCCTATGCAGCGGCTGTATCAGCTTCGACGC A,T [55174,55182] 55119 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 55053 31 100.0 34 ............................... GAGATACGCGACATGATTGCGTGGGTGTACGGCT 54988 31 100.0 34 ............................... CAACGATACCCTTGGATCGCCAAGGTGATGATGC 54923 31 100.0 35 ............................... AGCGACAGTGAGTACGCCAAGGCAGCGCAGTACCT 54857 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 54791 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 54726 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 54660 31 100.0 34 ............................... AGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGA 54595 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 54529 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 54463 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 54397 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 54331 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 54266 31 100.0 34 ............................... TCCGCCAGGGCGTCAATATCGGCCTGGGTAAACC 54201 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 54136 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 54071 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 54003 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 53937 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 53872 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 53806 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 53741 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 98.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AATCTAAGGTGCTGATCACCGATCAAGGTGGGTCAGTTTGA # Right flank : ACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //