Array 1 70177-71404 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEH01000031.1 Pasteurella multocida strain 2512PM isolate swab isolate 1 contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70177 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 70237 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 70297 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 70357 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 70417 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 70477 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 70537 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 70597 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 70657 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 70717 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 70777 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 70837 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 70897 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 70957 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 71017 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 71077 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 71137 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71197 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71257 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71317 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 71377 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96357-91347 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEH01000025.1 Pasteurella multocida strain 2512PM isolate swab isolate 1 contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96356 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 96296 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 96236 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 96175 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 96115 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 96055 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 95995 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 95935 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 95875 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 95815 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 95755 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 95695 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 95635 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 95575 28 100.0 32 ............................ CTTGTCTGTGAACTCAGTTGGTGTCCATCCAG 95515 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 95455 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 95395 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 95335 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 95275 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 95215 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 95155 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 95095 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 95035 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94975 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94915 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94855 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94795 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94735 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94675 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94615 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94555 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94495 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94435 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94375 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94315 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94255 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94195 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94135 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 94075 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 94015 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93955 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93895 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93835 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93775 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93715 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93655 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93595 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93534 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93474 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93414 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93354 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93294 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93234 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93174 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93114 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 93054 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92994 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92934 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92874 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92814 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92754 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92694 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92634 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92574 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92514 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92454 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92394 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92334 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92274 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92214 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92153 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92093 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92033 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91973 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91913 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91853 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91793 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91733 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91673 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91613 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91553 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91493 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91433 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91373 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 84 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //