Array 1 2088332-2089856 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027007.1 Akkermansia muciniphila strain EB-AMDK-31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2088332 31 100.0 34 ............................... CAAAAGATACCAAAAGAATCCAAAAGAATACAAA 2088397 31 100.0 34 ............................... TTCACAAAAAACCCGATAGGAGCCGCAATCGGAT 2088462 31 100.0 33 ............................... CCGTTGCATGGTTGCAATGGGATGACGCACAAG 2088526 31 100.0 34 ............................... CTCACAAAAATCCCTGTATGAACCGCAATCTGAT 2088591 31 100.0 34 ............................... GATATCTTGCCCTGGGACGTTAAACCCGCCCTTG 2088656 31 100.0 34 ............................... AACATTTCCGGCGGGGCTGACGGTGGAATAGGCA 2088721 31 100.0 34 ............................... TCTTAATTTTGCGAACCAGATTCACAGTCAGTTT 2088786 31 100.0 34 ............................... ATTTTCGGATTGTTGCTTGTCATAGTTGTGCAGG 2088851 31 100.0 34 ............................... AAATGGGAGGGGGTACTTTATAATGATTGGCAGA 2088916 31 100.0 34 ............................... GTTGGCGTAAGTGAAATACCTTGCCCCCGCACCG 2088981 31 100.0 34 ............................... GGCGGGGGTTAGATAGTAGCGGTGGACGAAAAAC 2089046 31 100.0 34 ............................... CTCTGTTATTTACCCTACCAGGGGCGTTGAGACA 2089111 31 100.0 34 ............................... TGCCTCTGCGTCAGCTCATTGACGTCAAACTTAA 2089176 31 100.0 34 ............................... CGGAGGGTCAGCTAGCTTCACCTGCAACGGAATC 2089241 31 100.0 34 ............................... CCGCGTGATTGTTAGGCAGGACTTACAAAGTTAA 2089306 31 100.0 34 ............................... CGGGGACGGGGTAGTGGACGATATTACCGCCCTT 2089371 31 100.0 33 ............................... ATCCAGCAGTGTTAAAATCTCCCAATCATCCCA 2089435 31 100.0 34 ............................... CATGTGGAACAATTTGAACCCGTTGAACCCGTTG 2089500 31 100.0 35 ............................... ATGGGGCCTGCGAGTTGTCCCACTGCAACCATGCA 2089566 31 100.0 34 ............................... GCATAATCCTACCCACGGAAATGGTATGGCGTGA 2089631 31 100.0 34 ............................... TAAAAAGATAGTAGCTTGAGGCAGGGCATTTACC 2089696 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 2089761 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2089826 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 24 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2630252-2627870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027007.1 Akkermansia muciniphila strain EB-AMDK-31 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2630251 33 100.0 34 ................................. TGCGGGCGTCAAATAGTAGCGGTGGACGAAAAAG 2630184 33 100.0 34 ................................. CCCGGTGGATGATTTCACTTTAGCAGATTTTCTT 2630117 33 100.0 35 ................................. CATGATTGTTTCAACTTCTCCGGACGGGTAGATGA 2630049 33 100.0 34 ................................. ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 2629982 33 100.0 34 ................................. CTCTCTAAAAACCAACGGGTTACGATTGTGTCAT 2629915 33 100.0 35 ................................. CGCCGTTATCTATCCCACCGGGGAACTAGTGACAA 2629847 33 100.0 34 ................................. CGGTGTTCCAGGCGTCTTCCAGCGCCTCGATATG 2629780 33 100.0 34 ................................. ATCAAAGGGAGGAAAGCTCCTAAGAGAAAAAACA 2629713 33 100.0 34 ................................. AGCGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 2629646 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 2629579 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 2629512 33 100.0 34 ................................. TGTGCCGTTGCCGGACCCTCGGAAATAGTCATCA 2629445 33 100.0 35 ................................. CCCCGCAACAATAAACTAAAAGAAAGGAAAACTAA 2629377 33 100.0 34 ................................. CACTTTGACGTTGCCCCCGCCCTTGAGGATTTGG 2629310 33 100.0 34 ................................. ACCCTTTAAGAATTAGGAACTTACGATTGTGTCA 2629243 33 100.0 34 ................................. TAGACGCTGAATAACTACGCCGCCCTATAAAACC 2629176 33 100.0 34 ................................. CCCGGACTTTTACGAGGATGCGGGCCTGTATGCT 2629109 33 100.0 34 ................................. CGTCGCGCGTGCCAGGCCATGACGAGGGCGTCGG 2629042 33 100.0 33 ................................. TCTTCGATGGCGCGGGCGAGAGCCCGCCATGCC 2628976 33 100.0 34 ................................. GATATGCGGGCAGTCCTCGTATTTGACGCGGATT 2628909 33 100.0 33 ................................. AACCCCCGGCACCCCCGGATACCAAGGAATCCA 2628843 33 100.0 34 ................................. CCCGCCGAGCTATTGATTGCCTTGACGAAGTAAC 2628776 33 100.0 34 ................................. CGGGCAAAAAAAGTGTGGCATCGTCAATACTGCT 2628709 33 100.0 34 ................................. CGCGGTACGGGCAACGGCACGAAAGAATACGGTG 2628642 33 100.0 34 ................................. TACGAGGGGGCGGGCCTTTTCGCTTACATTGAGG 2628575 33 100.0 33 ................................. GGCTCAATACACGGCAACGGCGGCAAGTGGCTT 2628509 33 100.0 34 ................................. TCGCATGCGTGTGCAAGTCCGATTGTGGTTCCTA 2628442 33 100.0 34 ................................. GGCCTGGCCGGTCAACTGGCTGATCTGCCAGCCT 2628375 33 100.0 37 ................................. CCCGCGCATACTCATGACTTGCGCCCGTGTACGCGCT 2628305 33 100.0 33 ................................. CCCGGTATCCGGGGGTGCAACGGAGACCGGGGA 2628239 33 100.0 34 ................................. TTCACAGAAAACCCTGTATGAGCCGCAATCTGAT 2628172 33 100.0 34 ................................. TATTGGTTTATTGTTGTTTGTTGTGTGGGGGCTT 2628105 33 100.0 34 ................................. GATGAAATAAGCATAACGTCATAAGCTCCAATCC 2628038 33 100.0 34 ................................. TATGAAACGCCAGAAGAAGAAAAATTAGCCCTAG 2627971 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2627948] 2627902 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= ===================================== ================== 36 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //