Array 1 488284-487769 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386854.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 488283 28 100.0 33 ............................ GGTCTCGGGTGTCCTCGGCGTGCCTGGCCCGGC 488222 28 100.0 33 ............................ GTGCGACGCATACGACGCCGAGACCGCCCGCAT 488161 28 100.0 33 ............................ GACGTGACCGCCCTGGCGTCGGCCTCCTACGCG 488100 28 100.0 33 ............................ GGATGCCCTCGACATCGGTCGGCGTCTCCCCTT 488039 28 100.0 33 ............................ GTCGGACACGGCGTAGGCGACGCCGCAGCTCAC 487978 28 100.0 34 ............................ GCAGGGTCGCCACCCGGGTGCCGGGCGATGGTGC 487916 28 100.0 33 ............................ GCCCGACCGCACCCGTCACACGTGTGACGCCGT 487855 28 92.9 33 ................T..........G GCCGCCACCTGCCGGCCGCATCCGCACGCCCCG 487794 26 82.1 0 .......TT.......T...--...... | ========== ====== ====== ====== ============================ ================================== ================== 9 28 97.2 33 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : CGCCGTGGTCGGCGCGGCCAGGTGGCACCGACGGGATGTGCGCTCGTTCGAGTGCCAGGTGCCCCCCTGGATGCCGCCGTCGGACCGCCGCCGGCTGGCCGGAGCGGGGGTGGCGCTGCGGGCGGTGGTGAGGTTCGGGGCGGACGCCGGGCCGCCGGTCGTGCCTCGGCCTGGGCACTGAACTCGAGCGTGGTGCTCCGCCTGGGGGCCGGCGCGGTGGTGCGAGTGGTGGACGGGGACGTCGGTGGGTGTGCCCTGACGGTCGGTCACTGGGGCGGGCGTTGGAGCACGTGGCCGGTGGTGGCGGCGGTACGGTGGGCGGCGTGACGAGGTCGGCGGTGGGAGTCGCGGCGGTCGAGGGCGAGGTCGCGAGTCCAACGGGGACCGACCGCGCCGGGAAGGGGCAGCCATCGCGGGCCGGCGCCCGGCGCCAACGGTGGCGCCGAACCGCACAAGGTCAAGAAACGGTAACGGTCCTCCATTGGTGCAGGTCGCGAAGG # Right flank : GCGCCTCGCGACCGGGTACCCGGTCACCCCTCGGCGGCGGGCAGGGGCGTGTCCGGAGTGATGTTCCGGTCCCGGCACGGGGTGCTGGTGGTGTGGTCCGCCTGGCTCCCGCTGGCTGGGCGGCACGGAACAGCCCCCGGCTCCGCGCGGAGCCGGGGGCTGGGGTGGTTGTCAGTGCAGGCGGTCGGCCTTGACGGCGTCGACCAGGGCCACGAAGGCGGTCCGGTGCACCAAAAGTGTTCCGCCGTCCCGGTTCTTGGTGTCGCGGATGCCGACGACCTCGCTCGCTCCCGTACCGATCTCGACGCAGTTGGACGACGAGACGGATCGTCGAGGTTTGCGCCACCGTGTCACAGCTCGCCCTCCAGTGCGCGCAGCCGCGTCCGCGACTCCTCCTCCGACAGGGCCACGCCGAGCAGGTGATCTCTCGTCGCGACCACGGGTGCGACGTCCCGTTCGCTGTACAGCCAGGTGGATGACCGGTAGTGCTCCAGGTGCAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17487-17880 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386858.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00011.11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17487 28 100.0 33 ............................ GCGGTTCGCTACTGACCTGCCGAGGATGACGCA 17548 28 100.0 33 ............................ GATTCGGGAGGACCTCCCGTAAGAGGAACTGAC 17609 28 100.0 33 ............................ GACATCCCGCGAGGCCGCCGTCGCGGACATCCG 17670 28 100.0 33 ............................ GACATCCCGCGAGGCCGCCGTCGCGGACATCCG 17731 28 100.0 33 ............................ GACATCCCGCGAGGCCGCCGTCGCGGACATCCG 17792 28 100.0 33 ............................ GGCGCTGCATCACTCGCACGACGTTCGGCATGA 17853 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Left flank : GGATCGGCCCCGAAACCGTGATCGCGACCACCGTGCATGCCCTCCAGGTCGTCGACGAGGACCTTCCCGAGTCGGACCACGACTTCAGCGTGGACCTGATCGCCACCCCCGAGCAGGTGATCGAATGCGGCCCGAGGCGACTCCCGGCGGGCCTGATGTGGGAGCGGCTTCCCGCCGAGAAGATCGCCGCCATCCCGGTGCTGCGACGGCGCGCCTCGGACCGACGGAGCCGCCCCGCTGGCCCGGGCGACGGACACCGACCGGGCCACGGATGAGAACGCCCATGACCGACGAGGAGAAGCGTGTCGGCTCCCTGGCCGAGGGGAACGTGACGCAGGCGCGCAAGCGCATCGCGGTTGGCCCGCTGAGCCGCGACGAAGCTGGTCGTCCTGTGCTGGGAGCGAGACGGGGGGCCTACCCCGTTCGTACGACTCCGGGAATCCACACCAACAGAAAATCACAGAACGGTAACGAGCTAACATCAGTGCAGGTCGGGAAGG # Right flank : CGGGCTCCACCGGCTTCCGGGAGTGCGGGGCGTCCGACGGGCTCCGGCCTGAGCGTGCGCCGCCAGCGAAGCTCGCGTGCGGACGAAACCTGGTCGCTGGTCGGGCTCAGGGCTCGGGCGCCCTCCCCCACTCCCCAACACGGGGTCCACGTGGTCGATCAGGACGTCACTTCCCGGTCCCTTCTGGCCGCCCAGAGCAGGACGGGCACCAGCAGGAGGGCGAGGAGGCCGCCGGCGAGGGAGAGGACTTCGTAGCCGCCGGTCGCCATCACCACACCGGACATCGCGCCGCCGCCCGCTCCGGCGAGGGAGACGAGCACGTCAATGCTCCCCTGGGTTCGCGGCCGGTTCTCCGGGACGGTCGCGTCGACGACCAGCGCGGTGCCCGAGATCAGCCCGAAGTTCCACCCTAGCCCGAGCAGGACCAGTGCGAGGATCAGCGGGCCGAGCGAGTCCCCTGGGGCGAGCGCGGCGACCACTCCGGCGGCCAGGAGGGTCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : GCCCCGCGCGAGCGGGGGTGAGCCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33380-33104 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000024.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00018.18_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33379 29 96.6 32 ............................C TCCACCACGCCACCCGCCGCACGGCCCGTGCG 33318 29 100.0 33 ............................. CACTGCTACGCCGACGCCGTGAAGGCCGCCAGG 33256 29 100.0 33 ............................. CTCCTGTTGGACCCGGAGATGATCTTGTCCAGG 33194 29 96.6 32 ............................C GACTGGGTGAGAAACAGCCGCTGCCCGTCGAA 33133 29 96.6 0 ............................A | T [33107] ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.0 33 GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : CTTGAGGATTTCGTTGGATCGGCGGAGTTCGGCGTTTTCCCGTTCCAGCCGTGCGATCCGGTCCCGGTCCGACTCCCCGGTATTCGTGGAGTCCGCCGAGCCGGTGTGGGTGCTGGGTTCACCGTTGCGGACCCAGTACCGCAGGGCCTCGGGGTGCACTCCGAGTTGGTCGGCTACCCGGGCGATGGCTCCACGTCCGGGTCCCCACTGCCCCTCCAGTTCACGGACCATCTCCACCGCGCGTCGCCGCAACTCCTGGGGGTATTTCTTCGCGGAACCCATGCTCCTCATCCTTCCTGGGGTGCAGGGCCTCCAACAAACCCAGTACGGTCCACCCCTCTTGGGTCCTTAACGTT # Right flank : GGTGGCGGCCGTCCGTCAACCCGCCACGTCGTCCCCGCGCGAAGCTGGTCCCGAGGATTGATGGGGTCTCCGCGCTCAGCTGCGAAGCGGAGAGCGACGGCCCACCCGCACGTCGTCACCGACGGTGAGAGTCAGTCGGTCGATGTTGCCGACTCACCGATTCGCCAACGAGGTAGTGAGGTTTTCCTTACTGGTCCCGGACATAACGTCCCCCAACAGGGGGACGTCGTACCGACAGGAGGAGGACCATGGAGTTCGGAATACTGGGGCCGCTGTCGGTGTCGCGAGGCGGCGCGCCGCTCCCGGTGTCCGGAGTGCACCAACGTGCCGTTCTCGCCTACCTGCTGCTCCACGGCAACGAGGTCATCCCCACCAGCAGGCTCCTGCGCACCATGTGGGGCGACAACGCGCCACGCACCGCCCGGAAGATGTTGCAGAACGCGGTGTCGGGGCTGCGCGGGCTGCTCGCCGCCGAGGAGGACGCGCCGATCCTGCTCACG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4254-4676 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000028.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00021.21_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4254 30 100.0 36 .............................. GAGTCGCTCGCCGCGCGCCGCCGCCAGGAGGTCGTC 4320 30 100.0 36 .............................. ATGTCCCGGGGGGACCGGGACGTCATGGCCGATCCG 4386 30 100.0 38 .............................. CCTGCGCCAACTCCAGGAGCTCTTCGCCTCCTTCGCCG 4454 30 100.0 36 .............................. TCTGGATGTCCGAGTGGACGGACGCGGTGACGTCCC 4520 30 100.0 33 .............................. GCGAACCCGCTGATCCTCTCCACCGCGCCGGGG 4583 30 96.7 34 ......................A....... CGGCGGTAGGTACATCCCCTCCGCTGGGCGCGGC 4647 30 90.0 0 ................G..........TG. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : CCGGCAGATCGGCCCGGGTGAGCGGAGGTCACTCGCCTACGTGAACACCTTCTACTACTGGCTCGGCCCGTCCGTCGCCTGCTGAGTCCGGAGCGGTGCGCGTCGCCGGTGCGGCAGGACGGGCCTCGAGTCGCCACAGGGAGGGGTCGGGCTGCCCGGAGGGCGCGTCCGTGTCGGCCAGGACGAGAACCCGTTGCGGCGCGGTACGAGGGCCGTGGGCGGCGTCACCGGTGAGCCACGATGAGCGGAGGGGAGGGCGGCGGCGCTGGTCGTCCTCCCCCCACCCGGTCGTCGTGCGGTCCCGCGACGGAGCGCACCGGCGGCGTGCGGTATACCGGAACGACGCCCCCGGGAACGACGGAAGTGGGAGACAGGAGCCACCACGGGTGCGGCCGGATTTCAGCGAACCCCCCGGGTCTGACGCCAAACCTCGGGTTCGCTGCGGAACGGACGCGAGCGACGCCCTTCAGATGTATCCTGACCTGCGACTTTACTCTCGG # Right flank : CGCCACCCTGTCCGCCTGCTCCGGGGTGTGGTCCGTGGTTCTCTGAGTTCCGGTGCGGGCCTCGCGAACCGGCGCCAAGTCGTCCAGGACATGGGAAGCGTTGACACCGTGTGACCGCCCTGCTGCAATTCACCCGTGGTTCCCACGGTGCTGACTCGACGGCGGCACATCGACTTCGCCCGCGTCAACACCCAGGCGTGTCGTAGCTCCCTGTTCCTCGAGCTCTGACCGCCCATCCCGGGTCGCTCCGGCCCGCTTCCCGTGAGGAACCACCACCATGTCGTCGCGTTGGCAGTCCACGTCCGATTCCCCCAGCCCCGAGTTGCGGGCGGTGCCCTGTCAGGTCTCCTCGGCGCCGGTCCACCAGGGCCAGCCGAGTGCTCACGCCGAGATGACGGTGACCATCACCGTCCGCACGGACGTGGAGGAGGCGGCGTCGGTCACGGGCCGCCTGGTGCGGGCGGTACGCCGGGCCGTCGACCTCTCGGCGGCCTCGCTCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 43643-43492 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000021.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00015.15_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43642 29 100.0 32 ............................. TGGCCATTCGTGCCCCGTTGGGTGATGACCCA 43581 29 100.0 32 ............................. AACTCGAAGTTGGGCCGGCCGCTGTAGCGCCC 43520 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : TCGTGATGTACCGGCTCACGGAACGCGGGCACACCCTGGTCGGAATCATCCTGGGAGCCGAGCCCCCAGCGCCGGCCGAGACCACGGCCTCCGCGAGAACGGGCGTGTCGCCGCACGTCAGCGGGTGACGGAGGCCGACCAGGTCAGTTGAGCCGCCCGACCACGAGCCGCGTGGTGACGAGCCGCGTGGCCGCTCGGTCGCCGAGTGAGGCTCCCGCGCCCAGCCCGACCTCCTACCTGCTGGCGACTGAGGGCGACACCTACCGAGGCCGTGCCTCCTGGACGGGGTGTTTCATTCCGGCGGAGGGGGACCGCCCGGGACGTGGTGGTGACCTGATCGGCTGGCCAGGTCCTCCTTTGGGAGTTGACGCGGCGACCAGCGGTCGGTGCGCGCCGATGACCGGCATACTGAGTGCCGGAGGCGTGCGGTGCCGATCAACGCTTCGAGAGAAGTGAATGAAAAAGGGGCAAGTGCTCCGCGATACCGCAGGTCAGGAAGT # Right flank : GACACCCAGAAGTCCATCGACCAGTTCGCCGGGTCCTCCCCGCCCGCAGGGCCCAAGCCCTCTACAGGGCAGTCCCTTGCCAGCGCAAGTGGGGCGGAGAGGGGCACCAGTGGGCGTCCAGCGGGCCTCCCAAACAGTGCCTGACCTCGTGATTGTCCGCCGGGGTCGCACTGCGATGAGCTGGTCCCATGCCCCTACGACACTGTCTGCTCGCCCTGTCCGTCGCGGTGGTGTGGGGGCTGAACTTCGTCGCCATCAGCGCCTCGTTGGAGCACTTCCCGCCGATGTTCCTGGTGGCGTTGCGGTTCGCGGTGGTCGCCATCCCGACCGTCCTGTTCGTCCCCGCCCCTGGCGTCCCCCTGCGGTGGTTGCTCGGTTACGGCTGCGGGTTCGGCATCGTGCAGTTCCTCTTCCTCTTCTGGGGCATGGCCGTGGGCATGCCGACAGGTCTGGCGTCGCTGGTTCTCCAGTCCTCCGCGCCCTTCACCGTGCTGCTCGGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49653-49875 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000021.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00015.15_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 49653 24 100.0 42 ........................ AGTTCCAACTCTGGGACAGCTCACCCAGTTCGACCGCCGCAC 49719 24 100.0 43 ........................ AGTTCCAACCTGAAGGTCCCGGATCCGGGACCTACGGGCTGAC 49786 24 95.8 42 .A...................... AGTTCCAACCACACCGTGCACGCCGGCAGAGGTGTGGCCTGT 49852 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 4 24 99.0 43 CGGGTCCTCATCGCTCCTACGAGG # Left flank : CCGCCACCACGGTACGCGGTGGGGACACCACCCGGCGCGTCCAAAGCCCGGATGTCCGGTCTGTTCTCGGGGGACGCGCGCCCACGAGCCAGGTGCCCGCGCCCCCGACGGACGAGGTATCCGCGCACTCTCGACGTCCCCACCGCCCGGCCACCATCGAAGCCGCCAACGCGCCGCGTGGGCGGGCCATTCGGAGGAGCAGGTTCTGCGCACCGGAGGTGGCAGGAGCCGGCTCGGTTCGGCGTCTGGCAGGAGGCAAGTGCCCGATAGCCTTGCTGGACGGCCGGAACGCGGTTGGGCTCGGCGGGCGGAACGCTTCGCCCCCTGCTCACCGAGCTGCGTCCCTGCCACGGAGACGCCGGGTAGTTGGAGACGGGAGCCACCACCACGTGCAGCCGAATTTCAGCGAACCCCCCGGGTTCGATGTCAAACCTCGGGTTCGCTGCGAATCGGGCGTCGTTGAAGCCGTCCAGGTGTATGCTGACCTGCGACTTTACTCT # Right flank : GTTCCAGCTGAGTGACAGCTTGGGATCGAGCAACGTGTTGCGGCTTCTCGCACCGTAGACACCTCGTGACGTGGCCAATCAGGTGTGGTCACCAGGCGTGGGATGCGTGATGACCGCCCCAGCTGGCAACTCATCATTCGTATTCCCACGAGGCAGGCGCTGAGCGTCAGGCGGGCAGCGCGCTGCTCGTCCAAGGCTCGATGAGCTGTTCGACGAGCAGGTGGTCTCAGAGCCTCGGCCCGGTGGTGTTGGTTTGCCGCGCTAGTCCTCGGAGGCCGGCGCTACTCGGCGAGCGAAGCATGCGGTAGGCGCGGGATGGCCAGTCTCGACGAGCGAGCGACCGCATGTCCGGGCAACGCCGACGAACCCAGTCGCCCTTCGCACGGCGCTCACCCCCACCCTGACTTCGCCTCCATCGAACGATTCAGTACTTCAGGTATCCGAACACGCACTGAGTGTCACAACCCAAGAGCGTGACCACGGACGAGGGAGACTCCCTT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGGTCCTCATCGCTCCTACGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 319359-319509 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386855.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 319359 29 100.0 32 ............................. AACATCCCGAAGTCGAAGGAGTCACCGAACAC 319420 29 100.0 32 ............................. CATTGTCCCGTGACGGGCGCGACTGATCACGT 319481 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CCGGCCGTGCGGGCAGCCGAGTCGGACACCCTGGTGCTCGCCGACGGGTTCAGTTGCCGGACGCAGCTCGCCCAGGGCCTGGGGCGGGACTCCTCGCACCTCGCCGAGGTGCTGCGGGACGCGCTGCGGGCGGCGGCAACGCGGGGCGGAACGCCGGCGAGCTGACGGGTCGCGGAGGGCTGGGGAGGCCAGCGGGCGCGAGGAGAGCGGGCTCCGTCCGGACCAGCCCGGGACGAACGCGTGTCGTCGCCCGCCGTTCCCGGCCCGGGAGCAGGACTGCACGCGGCCTCCTCTCCGGGCGGAGCACGGTGCTCGGGGCGGCCAGGGCCGTCGGGGCGCGGCGTGCGACGTGGAGCCTGGGCGTCAACGCGCGGAACCGGTGGCCCTACCAGCTCGCCGAGTGCGGATACCCTGACCGGACGAGGACGCGGCGGCGTGAGGTGCTCGGAAAAGTGAACGAGAACCGAGCGTGCCGCCCCTAACGCCGCAGGTCGGAAAGT # Right flank : GGCCTCCTGCTTCAAGTTCGTGAAGTCGTTGGCGTCGTCCCCGCACGCTGGGGGTGGTGCGGTTGGGTCGGCGAGTTGACGGTGCGGCCGGCGGGGTGGGCCGCCGGCCGTGCGGCCACCGGTACTGTCCTCAGCCCGCCTTGGCCCGTTCTCGGTCGGCTTCCGGGGACCACGGGCTGCGGCCCGTCACCGGTCGGGTCCCGTCGTGGAACGCGGGGCGCAGCGGTTCCCGGTGGCGCAGCGGGCGCAGGCCCCTGCTGATCGCCCGCATGATGCGGTCCCGGGCCCGCACGGCGTCGCCGGGGCGGCCCGACTCCAGTCCGGACAGTTCGACCGGGTGACCGAAGTGCACCCGGAAGGTGGGACGCCGGCGCATGGCCTGGAACCACGACCGGAAGAGGATCCACAGGTCGGCCCGGCTCTCGATCCGCAGCGTGCCCCAGCACACCGCCTCGTGCGCGCCCCACTGGCTCACCGGTACCACGGGAGCCCCCGAGGCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 483842-483569 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000007.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00005.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 483841 29 96.6 32 ............................A TAGCCGGGGCCACGCCCAGTACACCACCACCC 483780 29 100.0 32 ............................. ACGGCGGGGGAGCACGGTGGACTCGGGTGGCG 483719 29 100.0 32 ............................. GGCCCGCTGGCGACCAAGGCCAGCACGGGGAC 483658 29 96.6 32 ............T................ CAACATGATGTCGTTGGTGTTGTCAAGCAGTA 483597 29 93.1 0 ............T...............T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : AGGTGGTGGCGGGGAACATCGCGGCCTGGGGTGCGGCCGAGGGAGAGGACTGCGCGAGGGCGGGGGTGGCCGCCACTGTCAGGAGCAGGGGTACCACTGCCAACAGGGGAGCACGGCGTCGCATGAGGCCTCCACGAGCTGCGGAAGGACTGCGTTGTCCGATGTGTCCGAACAACGAGGACACCTCACCCTAGGATTTCGTGAGTAATTTTCGCGAGCTTCCAGCGCAACGGGACATGACGGTGAGGTGACCGACGGTGATGCGTGCGCGGATCGGTGATCCGTCGTTCCCGGGTCGGCGGGAACGGCGGATGACGCGTGCCGAGCTGACGGCGTCCGGAGGGGATCCGACCGCTGGGTCGGCGGGGGAGGGGCCAGAACGCCGGGCGAGTGCGCCGGCGGGCATACTCGGGACGAGGAGGTTTGTGGTGCTGCGGGAGACGCCGAGGAAAGTGAACGAGAATCGGCAGGGCCGCCCGTAAACCCCCAGGTCAGGAAGC # Right flank : CTCCGTCAGGGTCGAAGACATTCCGATCGGGCTGGCGGAGCGCCGCCCACCGCCGGCCTCGGCCCCGTGCGGGATGGGGATCCGTCGACGGTGGGTCGGCGGAGCCCCAGGTGGTGGCCCCACGTGGGCGATCCGGTCCACACGGGGCACATGATGTACGTCCACGAGGACCTTCCCGCTCGCCGCTCGATCCGGGCGGCGCCGAGGAAAGCCCCCGTCATCCCCCGCTGGCCGGTCGTGGCCGTTCGAGGAGGGAAGACGGCATCCCTCCCGAATCCGCTGGAAACCAGGTGGACGCGGAGGGGGCGGTTCCTCCCGAAGACGCTTCCGCGCGTCAGAGTGGAAATCGGCGAACGGTCTCGGGGTGGATGACGAGGCGGACCTGCTCATCCGACATCATCCCGGCGAGTTCCTCGGCGCGGCCCGGGTCGTTGAGGTCCCAGTACCGGGCGGCGAGCCGGGAGCACAGCTCGAGGGCTCCGTCGGGCACCACCTCCACT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : GTCGTCCCCGCGTACGCGGGGCTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 490189-489793 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000007.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00005.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 490188 29 100.0 32 ............................. CCGTTCAACGGGGCCTTGTCCGTGCTCCAGGT 490127 29 100.0 32 ............................. AGCGCAAGATCATCGACGCCTACCTCACCGGC 490066 29 93.1 33 ...T........................G GACGCCACCCGGCCCGGCCAGTTCACGAGGGAG 490004 29 93.1 32 ...T........T................ GCCGGCGCGCCGCCACGGCGCTGCCGGGTCCT 489943 29 96.6 32 ...T......................... TCGCCGAGGAAACGGGGCTGGTGGCGGCCGGG 489882 29 86.2 32 .GTC.T....................... AGCGACCCCGATCTCCTCCCGATCGAATGGTC 489821 29 93.1 0 ........................C...T | ========== ====== ====== ====== ============================= ================================= ================== 7 29 94.6 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CACA # Right flank : CACGTGACGAGCGCGACCGACCTCTTGGAGGTGGAGGAATTCGGTGTGCGGCGGGGGTGCCGTCCCCCCGGAGCACAGGTAACACCAGGGCGGCGGCTCCCGAGGTCGCGTCGCCGTCCAGCTCCCAGCGGTCCAACGACTGGGTGACCAGCTCGGGAAGCGCGGCCAGCCAGTCCCTGCCGGCCTCGCCGAAGGCCCGCGCGTAGGAGACGACGAGGGGTTCTGGGACGTGCACCGCTTCTCGCGCGCTCATGATGGTTCCTTCGCAGGCGGTAGTTCGTCCCGGGTCCGTCCGACCGGAACGATCAGTATCGGTGGAAGGCCGCTCACGCAACGTGGCGGCGGGTGGCCTCGGCCGTGTCACGCGCCCCGGGTCAGCAGGGCACGTCGAGCCTGCGTTCCAGTTCCGCCATTCCGGCCCGGCACTCCCTGGCCAGCGCGCGGTGCCCCTGGAACCGGCCGAGGATCCCGAAGGGCCGCACCGACGCCACGGGGCCACC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44975-45614 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386856.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 44975 29 89.7 34 ...............T......G.....C GCCTCGTCGGCGCACCGCTCGACGACCGCGGCGT 45038 29 100.0 32 ............................. CAGCCCAGGATGCGAACCTTCTGAAGCTGGCC 45099 29 96.6 32 ............................C GCGTCGTCTCCCCGTGGCGATGTGATTCCTCC 45160 29 100.0 32 ............................. CAGCTGGCCTGCTTGGCGGACGTCCGCGTGCA 45221 29 100.0 32 ............................. TTCCCCGGAGCCAGGCTGTCCCAGCCCGAATC 45282 29 89.7 32 ..........................TTT GAGATCCGCGCCATCAAGGCGCTCAGTACGGA 45343 29 100.0 32 ............................. CTCCTGTCGGAAATCCGGCTGAACGAATCGCT 45404 29 100.0 32 ............................. CACGGCTGCCGGTGCCCAGCTTGCACATGGGC 45465 29 100.0 32 ............................. AGCCCAAGCTGGTTCGGGTCCACCACCTCGAC 45526 29 89.7 32 ...............T......G.....C TCGTCCACAGGGGCGGCCGGTGCGGACAGCCG 45587 28 79.3 0 ..-...........T.....T...C..GT | ========== ====== ====== ====== ============================= ================================== ================== 11 29 95.0 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : ATGTGCCCGGCGCTGGGGTCCGAGTGGAAGGTCATCACGACCTCCGGATTCGCGAGCAGGTGGCGCACCTTGGCGGCGTGCGGCTCACTGAAGACGACGAGTTTCTCCTCCAGGTAGACGAACCAGACGGGGCGGAGTGCTGGCCGGTTGCTGGGGGTCACGGTGCCGAGCCAGAGAACTCGGTCCTCGGCCTTCTCCGACAGGCCTTCCAGTGGCGAACCAGTAGTCATGCAACAACGCTAGGAGTTCCACTTTGCTTGAGGTCAAGGTCATAGTGGTGGATGGGCGTCAGTGCTCCGTCTTCGGCAGACGGGTGCGCCCGGGGTTGGAGGCAGGGGAGAGGAGGGGGCAATGCGGACAATGACGAGTGCTCCTGCGAGGCGCTTCCGGTTCGTCGAGACGGTTCGGCGGCACTCAGGGAACCGGAGCATCCCGTATGGTGACGGAACAAAGTGAATGAGAATCGGTGTGGGCGCACCTAACGCCGCAGGTCAGGAAGT # Right flank : TGATGTTGGCTGCTTCCGGGGGCTGCCGAGTTCACGCATCGGTCCCCGTCGTCGACCAGCCGCCGTTCGGGTGGGCACGTTCACCGACTGCTGCTAGCCCCAAAGGGTGAACTCTGTGCTGCGTGAGCGTGATTCGAGCTGGCACTCCTACAGTCCTGGCATGGCCGCATGGCACCAGCCCCCATGTCCGGGTGTGGCAACTCTCCGCATTTCTCCCGACCAGGCTCCCCCCACCTCGTGCCGGTGTTGAGCAGGAGGGTCATCTGCCCGTGCGGCAGCATGACCCTGTTCGAGCCGCCCAACTGCCAGCGGCGGTCCTGCCTCCGCCGTTGGACGTGGCTGTGGTGCGTTCCGGCGCTCGTCCTGCTGGTGCTCATCATCCCGCTGACCGTGGCGGTGTGGGGCGACTCCTCGCCCTGTGACGAGGGGTTCCGATCGCTCGGCCCGCAGGTCTGCGTGCGGGAGTAGACGTCCTGATCGCTTTCCACCGGGTTGGTGGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : GTCCTCCCCGCGCACTCGGGGCGGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 254611-255228 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386856.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 254611 34 100.0 40 .................................. GCGGGCCATGCGGCCGGCACGTTTGATGCCGTCGGGGGTT 254685 34 97.1 39 .....C............................ GAGGCTGACCGGCGCGGGCGGCGCGGTCAGCCCACCGTC 254758 34 100.0 38 .................................. CGCATCCTCGACGACGACCCCGCGTTCATGGCCACGTT 254830 34 97.1 38 ...........T...................... GTGGTGGCTCCGCTGGGGCGAGTACGCCCGGCACTGTT 254902 34 97.1 37 ...........T...................... GAAAGCGTGAAGCTGGCCTCGTCGAGGACGAGGAGTT 254973 34 97.1 40 ................A................. GTCGACGCGGAGCAGGAGCGCGGCCGGGAAGCCGAGCGTT 255047 34 91.2 41 ...........GGA.................... AGTGCCTCGCCCGAAGACTCCCGCGAGCTGGCCCGCCAGTT 255122 34 97.1 39 .............A.................... GAGGTCACGCACTTCGTCATGCGGGGCGACTTCGGCGTT 255195 33 85.3 0 .............-...G............T.GA | T [255224] ========== ====== ====== ====== ================================== ========================================= ================== 9 34 95.8 39 GCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCCCTGAAACCCGTT # Right flank : AACTGAGCATGTCCGTCACGATCATGGAGGCCTAGGGGAGTGCGCTGTTCAGGACGATCTCGCGAAAGGTGTCGTCCTTCAATCGCAGCGCGCGGCGCCGTCCGCCTCGATCTCCTCCACCTCGTCCCCGTAGTTCTGCTCGTCGACCTCGAGGAACGTGTTCAGCTGAAGCAGTACACGGGGGCTGACGGGTCCAGTTGCCCGTACGCGCGGGCGTGGTTGATGCCGATCGAGTTCCGTTCTCCGGTCGCCGGGTCGATTCCGACCGAGGTGAGCTCGTCGTCGAGGAGTTCGCAGGGGTCCAGACCTCCCAGGGTTGCGCTTGCCGAGGAGGAACCAGTTCCGCTGCTCGGTGTGGACGCCCCGCCCGTCGCGGAGGCGTCCGTTTCGGACGTCCCCGACTGGTCGCCGTTGGTGGTGGGGGTGGCGTGACCGGCCGACTCCCGGACGCAGCCGCTGATCGTGACGAGCGCCGCCAGCAGTGGACCTACCAGGACCCG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : GCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 276557-276330 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000010.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 276556 30 100.0 36 .............................. GCGAGCTCGGCCCACCGGTCAGCGTTGGCGGGTGAC 276490 30 100.0 34 .............................. CCTGGTACTCCAACGAGGCTGCTGGCGAGGATTG 276426 30 100.0 37 .............................. CGCTGGACGCCTGCACGCACGACGGCATCCCCGCCGG 276359 30 93.3 0 ...............G...........G.. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 36 GTCCTCATCGCCCCTAAGAGGGGTCACAAC # Left flank : CGACGACAGTCCCAGCTCTCCGGCTCCCCGACCCTTCCCTCCGCGACTTCCTTACGGCGCCCAGTGCAGGACGACCTTCCCGACCGGCAACCCGCCCGATACACCGACGGGGTTCCACCGCCTCCACGAGACGCCGTCCACCCGACCCGCTCCCCGCCGCATGCTGACCCTCGGCGCCTCCGCCTACCACTCGCACTCTCCGCGATACCGTGTCTCCGCACCGTGCACACCGACCATCTCAGGCCCACCGTTCGACCAGGCACCACAGCGCCCGGCACGTCTTCCTCCGCACGCGAGCCAGCTTTCGAGAAGGCCCCTACGACAGCGCGGAGAGACAACGGACCCCGCTGGGATGCCCCGACCACGGGCGAGGCGCAGCCGCAGGTCCGCGTACCATTTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAAAACAGCCACGAAAAACCGCTCGTGGACAGCCTCCCACCTGCGGCTTTACTCTCGG # Right flank : GTGCCTCGGCGTGGAGGCGTCACCACGGGGTACCGCCCAGGCTCGCTGGCCCGCTGTCGACGACGATCAGCTTGTCACCCAGGAAGCCGTCCACGTCTGGGCCCAGCCACGACTCGCCTGGTCGAGCACGGTGGAACCTGAAGGTTCCGTTCGTGCTGTTCGCTCCCACGATGCAGCGCACCGCGACGGGCTCGGGCAGCGCACGGACAAGCCGCACGACCTCCAGGGCGAAGCCCAACCCGTGCCGCGACATCCGCACCTGGTCCGCCTCGCTGATCACCGGCTCGCCGTCCTCCAGGCATCCGACATCGACGGGAACCACGTCATCCAGGTGGATCTCGTTCGTCGCGCACTCCCATGCGGTCAGATCCTCGGTAGCGGCGTGGGGTGCGTGAGCACGGGTCGCGCGTCGGGCGAAGACCAGGGCCGGGCCGGCCCGCACGATGCCCTCGTCCAGCACCTCGCGCAGCTCGGGAGCCAACTCCGCCACTGGGGTCGCG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAAGAGGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 287717-287558 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000010.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 287716 29 100.0 36 ............................. CGGCTTGGGCTCCTCCTGCTGGTCTCCCTTCTCCTT 287651 29 100.0 36 ............................. CGTGCGGGGGCTTCCTGCTGTGCGTGGCAGGTCAGA 287586 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 GTCCTCATCGCCCCTAAGAGGGGTCACAA # Left flank : CTTCACCCGACCACTCCAACTGCTGGCCAAGGCGTTGTCCTTCACCGATCCCGTGACAGGTCGACCACGCCGTTTCGAAAGCCGCCTCACGCTCGGAGCCTGGGACGACTACGAAACCTGGTCCGGGGGCCGACACGACCCGCGCCCCACCCCGTCGGCGAGCCACCCATGAAAGCGGTCTGGATGCTGACCTTCGGCGCCTCCGCCTACCACTCCCACTCTCCGCGATACCGTGTCTCCGCACCGTGCGCACCGCCTCAGCTCCACCGCCCGGCAGGTCTTCCTCCGCGTGCGAGTCAGCTTCGAGAAGGCCTCGTACGACAGCGCGGAGAGACAGCGGACGACCGCTGGGATGCTCCGACCCACGGGTGAGGAGCAGCCGCAGGTCCGAGTACGATTTGCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAAAACAGCCACGAAAAACGCCTCGCGGACAGCCTCCACCTGCGCCTTTACTCTCGG # Right flank : TCCGATGCGCTTGTGCCAGCTGTCTTCCGCACCGCGTGGTGGCCTTCATCGCGCCTCGTCGGGGGCCGACCAGGCGTAGCGGCGTCCAGGGGCCAAGCCGTGACGGCCTGAACGGTCAGCGGACGTCCGAGCGAGGAAACCCAGCGCGGGAAGGGTGTTGGCCAGCAGACGTGAGGCATCCGCTCTTCATGCTCGCTTCCGGTTCGGGCGCGGACAGTGGTACTCCGCGCCCGAACCCACGGCAGGCGCCTGACGCGGGACGGCGTTGCGTCGGCGGTCAGCGGTGCCCGGAGGTCAGCGGCGGATCCACCCGAAACCGCCGGAGTTGCGGGCACCGAGGCCCCAGGCCCAGAGGGCCCGGAGGGAGTCGGGCTCGCCGTGCACCCGCACGCTCACGGTGGCGCCGGCCTGGCGGCCACGCCCGATGGCGAAGGACCTCTTCGGTCCGGTGGGAGTGACCTCGCTGAGCTTGATGTCGGAGTCGAGCTTCAGCGTGTCGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAAGAGGGGTCACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 226915-227246 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBJ01000013.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00009.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 226915 28 100.0 33 ............................ GGACGCCTTCGAGGGGCAGGCCGTGACGGTGCC 226976 28 100.0 33 ............................ GACCATCGCCCCCGGACGCTGGGAGGCGACGAT 227037 28 100.0 33 ............................ GGGCGACGTGGACGTGGTCCCCGACCCGGCGCA 227098 28 100.0 33 ............................ GGTGAACGCGTTCGTCGGCAACGGCCAGGTCAC 227159 28 100.0 32 ............................ GTAGCCGACACGCTCGGCCTCGAGCCGATGGC 227219 28 92.9 0 ..................A........G | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : ACGACGTCCGCCACCCCGAGCACGGGCACGGGTGGGTGCAGGGAGCGGGGGTCGGCAGGGTGACGGTGCGGTTCGAGACCAGGACGACCGGGCCCGGACCGGCCAGGACCTTCGCGATGGACGACCCCGCGCTGCGCGTCGCGGACCCGCTCGCGAGCCTGGACTGGTTACCCGTCGTGGGCAGGAGGAACGACCTGGCACGGGCCCGGACGGTCGAGGACGGGAGGACGCCGCACCCGGGTCCGGCCGCCGGTTCCACGACGGTCATGGAGTGGGTGGCACCCGTCGGCCAGGAGCACGACGCCGTGAGCTCGTGAACGAGCACCGGGAACAAGGGGCGACGTGGACGATGGTGGAGGAGCAGCCGACTGGCCGCGCCGGCGACGATCCGTTCTGGGCGGCGTGCCACCACGCGACGGGACTGAGCGGGAGTAGGCTGATCATCGAGGCCGCAAGGTCAAGAAATGATAACGGCACTCCATTCGCGCTGGTCGCGAAGG # Right flank : GGGTGCTCGACCGCGGATCTGAGCAGGGCGGCTACCGCCGCCACCCGCCGGTGAGCACCGCCCGGCCGGCCCGTTCGCGTCTTCGGTCCGGCCGGAACCGGGATGTCACACGTCCGGAACGCGCGGGCGGCTCATCGCCGTGGCCGCAGGCCCGCGACCAGCTCGTCCGCCGCCGTGTAGGGGTCGGTCCGCCCGGCCAGCACCCGGTCGGCGAGGTCGACCAGCGCGGAGCCGCCCCGCACATCCCCCAGCCGGCCCCGCAACTCCTCGACCGCGATCGCCTCGACCTCACTGGCGGCTCGCCGCCGCCGCCGGGCACTGAGCTCTCCGTGTTCCCGCATCCAGTCGTGGTGTTCGTCGACAGCCGCGACGAGCTCGGTCATCCCCTCCGCCCGGGATGCGACGGTCCGCACGATCGGCGGACGCCAACTCGGCCCCTCCTTCTCCCGGCGGCCCAGGGAGATCATGTGCTTGAGCTCGCGGACGGTCTGGTCGGTGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 321-108 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386857.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 320 29 96.6 32 ............................A CCTCTTCTGGGCGTCATCGGCGGCCGCCCTGT 259 29 100.0 32 ............................. CACGGCATCGCCCCGGCCAGCTCGTTGTTCGA 198 29 96.6 33 ...C......................... GTCGTCCGCGGTGAACCCTCCCCGCACCTCAGC 136 29 93.1 0 ...C........................A | ========== ====== ====== ====== ============================= ================================= ================== 4 29 96.6 33 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : ATTGCCAGGGATGGGTAGGCCTGCGGGCGCCGGAGGGCGGCCGGAACTGTGCTTCGCCGCCGAACGGCAGGGAGTGGACAGCCCGCGCCGGTCACGTGAGCGAGTGGTCGTGCGGACCGCTTCTTCGTGGTTCGAGGTACGAACGGGCGAGAACTCGCAGGTCAGATGGTGGCGCGAGGTGTGAGGGACGGCGGGGAGGGCGGGAACGGCAGTTGTTGTGGATGTTTCACCAGGTATGGCGCGATGTGGTGGCTGACGGGAATTGCGGACAGTTTCGTGCTGGTGGGCGGCGCGTGGTCGAGCGGTGCGAATGTCCTCGCCGTCGCGGGAGGGCGGCGGCGGGTTGTGGGGACGCCTGGTGGAGTCGTTAAGGGCCTGCTGGAGGGCTGTGGCGGGGGGACGGGATACTGTGGGCAGGGAGGATCTGTGGGATGCGGGAGACCGTCGGGAAAGTGAATGAGAATCGGTCGTGTCGCTCGTAACGCCGCCGGTCAAGAAGT # Right flank : ATGTCTACCCCCCTGGACCGCCCCGGTGGTGTTGGAGGCCGTGCCTCCCACGCTCGTGTGCGTTCAGACCGCTGTGGCCTGTCGCCAGTGTCGTTCCTCGTACTCCAA # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 151099-151324 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386857.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 151099 28 100.0 38 ............................ ACAGGTCAACGACCACGTCGAGGTCCCGAGCCGTGGGT 151165 28 96.4 38 .........................T.. ACGCGAGGCGAGCGGCCGCGAGCGGAGCAGCCGTGGGG 151231 28 100.0 38 ............................ TCCGGCCGGTCACGAGGTCAGACACGGCGCCGGATCTC 151297 28 82.1 0 ..........G.....G.GC.....T.. | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 94.6 38 GTCCTCATCGCTCCTACGAGGAGTTCCA # Left flank : GCTGCCTGTGTCGCGTGGCCCGCGGCACCCGCCTGCGAGCTCGACATCCTGCGGCGGCCGGGGGCGGGCTGACGGCCGAGCACCGGGCGGGTTGGGCGCGACGCGCACGGTAGGCTTGCGCACGGAGATTTCAGCGAACCCCCCGGGTCAGATGTCAAACCTCAGGTTCACTGCAAAAGCGCCGCCAAAAGCACCGTGCAAGAAGGCCCTGACCAGCGACTTTACTCTCGGGTCCTCATCGCTCCTACGAGGAGTTCCAACGAGGAAGAGCGCCGGAAGGCGCGGGACCTGGGGCTCGTCCTCATCGCTCCTACGAGGAGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGCTCAGCCCACGCTGGTTCTGAATGGTCACCAGGTGTGGCTTAGCTCTTGCGACGGATTCCAGCGGGGCCACGTACTGGGTCTCCGCAGGGGCGCAACTCCGACTCCGCATCACGGCTACGCGGAGGCTGCCAAGTCACCGTAGAAGGGGCAGACGGCTCAGGCCGCGAGTCGAGTCCATGCCAGCGGCGCTCCACGATCCAGCAGGGTCAACGGTGCCCGGCTGCGCCTCGCTCGCGGGCGAGGAGAGCCATGCCAGCGCCCCGCAGCTTGCCCCTGCCGTTGCCTCCGTTCGAGGGCCCAAAGCTCGAATACCGCCATTTGGAGTACCCCTTACCGCCAATCCTGAGCTCCCACTGCTGAGGGTGCCTGCTCGCGGCCGAACTTTCAGCGAACCTCACTCGCTGCGCGAGACCCGGGGGGTTCGCTGAAAGAGCAAGATCACCTGGATAGTTGGCACGGCCGCGGATTGGGCTAAGTGGGTGAAACTTGACCGGTAG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 160289-160911 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386857.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 160289 30 100.0 36 .............................. CGCTTTGCTGGCGGCGGGGAACAACCCCAACTTCGT 160355 30 100.0 35 .............................. GCGGGCACCCTGGGGACGACGGTGACGGCCTTCGA 160420 30 100.0 37 .............................. GCTTTGTTCGGCGGGCCCCTGATGGCGCTCCGACGGG 160487 30 100.0 35 .............................. GCGGGCACCCTGGGGACGACGGTGACGGCCTTCGA 160552 30 100.0 36 .............................. CGGATCAGAATGTGGTGCGCCGGGTACAGCGCGCGT 160618 30 100.0 36 .............................. AGGAGGCGGGCCACGTCGGGGCCGGTGAGGTCGCCG 160684 30 96.7 36 .........A.................... GCGACGGAACGCGGCGCGTTACCCGAAGTGATCGGC 160750 30 100.0 37 .............................. TCCGTCTCCGCCCAGATCCTGCCGTCGTGGGGGCCTC 160817 30 100.0 35 .............................. AGGACACCTCGGCCCCGCAGATGGGGCACGTCCTG 160882 30 96.7 0 ...........................T.. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.3 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GTCAACCACCGCACGCTCGGCCGCAAGGTCACGTACGACGAGTTGATCTACCTTGACGCGCTCGCGCTGACCCGCACCTGCCTTGAGGGCACACCGTACAAACCGTTCCGGATCTGGTGGTGAGGGTGTACACCATTCTCGTGTACGACACGGCGGCGGAACGCAATGCCGGTGTGTTGCGGACGTGCCGAAGGTACCTGCGCCACCAGCAGCGGAGCGTGTTCGAGGGGGAACTCAGCGCGGCCCAGTTCGTACGCCTCCGCGAGGAACTGCGGCAGCGCATCGATGCCGACTACGACCACATCCTCGTCTACACCTTCCCGCCAGGTACCGACCCGCAACGCCAGGCATGGGGACGCCCGGACGACGAGCCGCCAGATATCCTGTGACCACCTCATTTCAGCGAACCCCCCGGGTCGGATGTCAAACCTCGGGTTCGCTGCAGAACAGCCCCCAGAATCCCACTGTAGATACCTTGTGACCAGCGACTTTACTCTCGG # Right flank : CTCAACGACCAGGAGTGCCGGGCTGGTCCGGAATGCCCTCGGGGCTCCTGCTGGTTGTGTCATCGCGGTCGTCAGGAGCTGGTGGTCTGACGCCCTGCCATCGGCCAACGTCGAGGCGAGGCTCGGCCCCCGCCTCGACGGAACACTGAACGACGTTCAGCGGTTCGGGTTCATCGCGCCTCCGAGGAACTGACGAAGTCGGTTTCCACTCGCGTCGTCGCTGATCTCGGCCGCCTCAGAGCAGGCGGACACGATCACTCTTCAGCGACGCTGACTGAGGAGAGTTGAGCGTGACGTTACCCATCACACCGCCGCTCACGCCTGTGCTCACACGGTTCGATGCCACCCGCCCGACACCGAGGCGCGTAAGCCGCTTCCACAGCAGGCCGGAACCCCGCCCCGGGCCGGGTGGCCGGCTTGCCTCGCTGGAAGGGACGAGGTCCAGGCTCGTCCTGTCGGCAGCGCGCGCCCGTTCCTTCGGTCGGAGCTGCCGAACGTCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 195180-195030 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386857.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 195179 28 100.0 33 ............................ GCTTTCGAGTGGCCAGCTCAGCAGCAGGCCGCG 195118 28 100.0 33 ............................ GGGGTTTGTCGAGCTGGCCGCGCGGCCGTTGTC 195057 28 96.4 0 .........A.................. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 98.8 34 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : TGCTGACCCATCTGCTCTGGGTGTGCGCGGTCGCGGTGGTGTCGGTTGGCGCGCTGTTCCTGGTGGGCATCCTGTTGGGATCGGGTCCTGTCAACGGCGACGTGCTGGCCGACTTCACCCGGCTGGTGCTGTTGCTCGTCCTGACCGGTGCTGTGGTGGTCCCCACGTCCTTGGTGGCCACCCTCGGCCGAGGGGCACTTCCCGGGATAGGGGCGGCCATCGCCCTCATCGTGGTGTCCCAGGTGGCGACGATCGTGCAGCCCGCAACGGCCGCGTGGCTGCCCTTCGCGGCTCCGGCGATCTGGGCGCTGTTTCCCGAGGTGGTTGGTATGGCCCAACTGGGGCTCGTCATCGCCACCAGCGCGGTGTTCTGCGGTCTCACGGTCCACGTGTGGAACCGCTTGGAGCTGGACCGAGGAGTGTGAGCGGGAGTACGGTGCCGCCGGATCCGTCTAGGTCAAGAAAAGGTAACGGGCTCCCGTCGGCGCAGGTCGCGAAGG # Right flank : CTGGATCCAGAGCTTCGGCCGCGCCCTGGACGCCACCGCCGGCGCGGCACCGCTGCTGCTGCTCGGCGACCTCAACGTGCTCGAACCCAGCCACACGCCGGCTCACGGGGGCCAGTTCGCACCGTTCGAGTACGCCTTCTACAGCGGCCTGACCGACCGGCACGGCCTGGTCGACCTGTTCCGGCACCTGCACGCCGACCGGGTCGAGCACAGCTGGGCACGCCGTCCGGACCTGGGCTTCCGCTACGACCACGCCCACGGCTCGGCCGCCTTAGCCGAGCAGCTCACCGGCTGCGAGTACGTCCACGAGACCAGGGAACTCGCCGGGGACGGCTCCCGGCTCACCGACCATTCCGGGCTCGCCGTGCGTCTTGCGCTGACGCCACCGGCGCGCTGCTAACGTCGGACCCCGCCACGGCGGCCACGCCTGCCGAGCCGGAGCCCACCCTGTTCTGACCGGCCGGTTCGCGTCTCGGCTGCCCGAGCGCACGCCCCGTCAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 198271-197781 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386857.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 198270 30 100.0 34 .............................. ATCGGCCCGCACGCCGCACACCGCATCCGGGCGG 198206 30 100.0 36 .............................. CGGGTCGATCAGGCACGTGATCCACACGTGATCCAT 198140 30 100.0 35 .............................. ACCCAGTCGCTGGGCTGGGGTGCATCACCCGAGCG 198075 30 100.0 36 .............................. AGATTGCCTACTGGTCGTTGGGTTGCATTTCGAAGC 198009 30 100.0 37 .............................. CGGATGATGTCGTCCGCCGCCAGTTCGCCGGACGCTT 197942 30 100.0 36 .............................. GCGAAGTCGAAGCGGACGCCGGCGCGGTGGCACTGG 197876 30 100.0 36 .............................. AAGTCGACGCGCCGGACGAGGGCGTGGTGTGCCCGG 197810 30 86.7 0 ......................ACCA.... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GGTCCAGGACCCGTACAGCAGCACGCCGTCGAGCCGGGGCTCCGCGTGCGCCACCTCGCGCAGTCGGTCGATGCGGCGGGCGAGGGCGGTCGGTTCGGTGTGGGGCATGGTGGGACTCCTCCCTGAAGTGGACGAACGGGCTCCCACGTCCGGCCGGAGACGGCCCACGGACGCGAGTGGTGGTGACGGTGCGGAACCGTGTCCTCAGGAAGTGCTCATGCGCGGATGGTATCGAACGAGCGATGGGGGAGAGGTGGGCGACCACTACGCTTGAGGCGGTCGAGCACCGGGGCCGGTGGGCACCTTCCCGGCGGCCTTCGCCGGTTCGGCATGCTGATCTGGTGGTGTTTCGGGCCGCCGGAAGGCTGGGGAGGAGTCACCATCGAGTGAGGCGAGATTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAGAACCGTGTCCGATAGGGTGGTCCAGGCGCCCGCTGACCTGCGACTTTACTCTCGG # Right flank : CATCCCGCCGTGCAGCCAGGGTTGCCGAAGCCCTGGCGTGACCACGAGGGCGACCGGGGATCTGCGTTCGCCCGGTCGCGGGCGTGGACACCCTGCCGGAGCGGCAGGGGATCGAGGGGAACGACCAGGAGAAGGGCTGGCTCGAGGGGCTTACCGACTACCTGGTCGCGCTCGCCGGCACTGCCCGGTGGCTCGGTTGCGGCCTGGAGGAGGTCCGCCGGTTGCTGGCATCTGCCGCAACGGCGGTCGCGCGGCTAGTGGGTGTGGTGGGGGCGACGTGCCCGAGAGCCCCCGGTTGCGAGCCGGCGCTTAGGAGTGGCGGGATGGTGCACGCGGCGACCCACACCGTCGCGGTGATCCGCAGCTTCGTTCCGGCTGCTACCGCGCTCGCCGCACCCCGTTGAGCTCCTCCGCTTCGTGGGCGGGGCCGCTAGCCACTCAAAAATGTTAGTCGATAACATTTGTCCGTGGCTACGGTGTCGAAGCGTGAGCGCACGCTG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 6 271739-271038 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386857.1 Actinoalloteichus cyanogriseus DSM 43889 G443DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271738 29 96.6 32 ............................G GACGCGGGCCGGAACGAACCGATTGAGCTGGG 271677 29 100.0 33 ............................. TGGCTGGTCGGCGGCAGGCCGGGCCAGGGCAAA 271615 29 96.6 32 ............................T ACCTGTTCTTCGTCCGTCCGCCGGTAGCGGCG 271554 29 100.0 33 ............................. AGCCAGGTCATAGGCCCGGAGCGCCGCCTCCGC 271492 29 100.0 32 ............................. GGCCGGCCAGCCCGGCACAGTGCGGCTAGGAC 271431 29 96.6 32 ............................G CGCTGGCCCGGATCGGCCACCTTGAGCGCCGG 271370 29 96.6 32 ............................G GGAGGGCGCCGGACTCACCCAAGCCGCACTCG 271309 29 96.6 32 ............................A TCCAGGCGATCGGGCGAGCGGTCGGCGTGAAC 271248 29 100.0 32 ............................. ACGGGCACCGCCTCGTCGATGGGAACGGCCGT 271187 29 96.6 32 ............................T CGTTACGACGTCAGAAGTGATTAAGGCCGGCA 271126 29 100.0 32 ............................. GCAGCCGGCCCGGCGGAGGCCAGGCCGATGAT 271065 28 79.3 0 ..............TC....T-...G.G. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.6 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : TGGTCGGGCGAGCCGGGGAATCGGGTGCTGCGAATGACGCCTGCCGGTCGGATGGTGGCGCTGGATCTGCTACCGGCCGTCGAAGCCTTCCTTGCTGAGCTGGCTGGTGCGTCGTCGGCTCCCTAGCCTCAGGTCGCTGTGCGACCTGAGCTGGTAGCTCCGCTTCGCCGCCCGTCAGATCGCGGTCACGGGCAATTCAGGGCAGAAAATGTCCTGAATTCGCCCCCTGCGAGTTGTTGCCTGAGGTTCGCGCCCGAGGGACGCGCGCCTCGCGGTGGCTGGGGCATGGGTCGGTCAGGACCTGGGGTCGTGGGCGCAGGGGTAGGTTCGCTAGCAGGACAAGCCGGCTCTGCCGACTGCTTCCTGGCTGGACGATCCCGGTGCCCGTGCGACTCGGCGGGAGGCTCATACTGAGGAGGAGACGGAGCGGCGTGGAGCGGAGGCTGGAAGAAGTGAATGAAAACCGGCCCTGTTGCTCGTAACGCCGCAGGTCAGGAAGT # Right flank : ACTGGGACGCACCAGTCGCCGCGAGACCGCGTTCGCTACCATCGGTAGTCGATTGGCTACCCGGAGGCGCCCGGGGAGCTGCGGTAGGGAGCCCGCCCGGGTCTGCCGATGGCTGGGTACGCCTTTGGTCCTCAGGAGCAGCTGAGGCCGAGCTGTCCTGGGAAGGAAGGATGCCACGTGAAGTTGCGGGCGTTCGATCAGCTGTTGGCGGGCCTGATCACGACCGACCACCCCGAGGTCACCAACGTGCACTGCTACGGAGAGGACCGTCCGCAGCACCGAACGCGGTTCAGGGTCGACTTCGCGAGCGGCGCGGCCGCCTATCTCTACGTTGACGACGTGTCCGGGCCGGGAATCCCGCGTATGGCTGCTGACTCGCCCGAGGTCCCCCGGGAGGCGCTGTGAGACTCGATCGTTTTCGTGAGTTGCTCCGCGAACAGTTCGCGGCTCACCCCGGCATAGCCAGCATCGAGGAGTACCAGGTTCCCTCGACTACCGGC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //