Array 1 154939-156064 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMC01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N19992 SEEH9992_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154939 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 155000 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 155061 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 155122 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 155183 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 155244 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 155305 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 155366 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 155427 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 155488 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 155549 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 155610 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 155671 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 155732 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 155793 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 155854 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 155915 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 155976 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 156037 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172323-173986 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMC01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N19992 SEEH9992_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 172323 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 172384 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 172445 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 172506 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 172573 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 172634 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 172695 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 172756 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 172817 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 172878 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 172939 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 173000 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 173061 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 173122 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 173183 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 173244 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 173305 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 173366 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 173427 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 173530 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 173591 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 173652 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 173713 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 173774 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 173835 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 173896 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 173957 29 96.6 0 A............................ | A [173983] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //