Array 1 6570-5282 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDAI01000297.1 Pseudomonas aeruginosa strain 10 scaffold_296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6569 28 100.0 32 ............................ CGAACTCACAATCCTTGCCGCCAAACTTCAGG 6509 28 100.0 32 ............................ AGTTCGTTCTTTTCCCACTTCAGGCCGAACTC 6449 28 100.0 32 ............................ AGGAGCTGCAACTTCTTCCGCCGCCGCTTGCT 6389 28 100.0 32 ............................ TGGAGCTTCGCAAGCCGCGTGTGCCGGACTTG 6329 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 6269 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 6209 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 6149 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 6089 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 6029 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 5969 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 5909 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 5849 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 5789 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 5729 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 5669 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 5609 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 5549 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 5489 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 5429 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 5369 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 5309 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7315-7882 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDAI01000040.1 Pseudomonas aeruginosa strain 10 scaffold_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7315 28 100.0 32 ............................ TGGTTCGGCAGCACTCAGACGGTTTCGCTCAG 7375 28 100.0 32 ............................ GTGCTGTCGGGACGGTGGACAGCGAGGGGATC 7435 28 100.0 32 ............................ TGCTACGCCCTGGCCGGCTCCAGCGCTCCGAA 7495 28 100.0 32 ............................ ACCAAGATCGGCCTGCGCGAATTCCGCGTCGA 7555 28 100.0 32 ............................ AATTGTTGAGATGCCGCCGAGCGCTGATCTCT 7615 28 100.0 32 ............................ AACCCGGCGGCGACCGTTGCTGCCTGGAATTC 7675 28 100.0 32 ............................ ACGGTCAGCTTGCGTTCCACGGCCGAGGTCAA 7735 28 96.4 32 ........................K... ATCGCCGCCACCACCCGTTCCAGGCGTGCCGC 7795 28 96.4 32 ...........T................ TGAAGGCAAGGGACGTATGGGATGTGCACTTC 7855 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCYTGAGGTCGGCRATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGTAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 17206-16397 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDAI01000040.1 Pseudomonas aeruginosa strain 10 scaffold_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17205 28 100.0 33 ............................ ACGTTGCCCCCATCCTGACCATCAACGGAGCAA 17144 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 17084 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 17024 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 16964 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 16904 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 16844 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 16784 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 16724 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 16664 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 16604 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 16544 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 16484 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 16424 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCTCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9816-11108 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDAI01000016.1 Pseudomonas aeruginosa strain 10 scaffold_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9816 30 100.0 36 .............................. TCCATCGCCATCCAAGTAGTCTGAAAGGGTGGCCGT 9882 30 100.0 35 .............................. AACAGCGCAGAAATCAGCAAGGAACTCTACGACGT 9947 30 100.0 36 .............................. CTCAGCGAGACGATGCTCAAAGTCATTCACGAAGGT 10013 30 100.0 36 .............................. TCGCCGAAGGCCTCGATTTCGACCGGCTCACCAAGT 10079 30 100.0 36 .............................. AATGACGCACTCGCCGGCGCCTACAGCTATGTCCGT 10145 30 100.0 35 .............................. GCGAGCTTAGCCACCAGCTGCTCATAGTAGTCGGT 10210 30 100.0 35 .............................. TATTACGGTTCTGGGTGCAGCATCTGCGGGGGTGT 10275 30 100.0 35 .............................. TCGCCCTGGAGCGTGAGCCTGGTTGGTGGATCTGT 10340 30 100.0 38 .............................. GTCAGCAGCCGGGCCTGGAGCGTCACGCCCTGGCTGGT 10408 30 100.0 38 .............................. TCGACGCTGCTACTCAACGCCGCCGGCCTACCCGATGT 10476 30 100.0 37 .............................. ACGGCGACCCTAGAGTTGCGTGAGCGCCCGATCCTGT 10543 30 100.0 37 .............................. TCCGCTACCACGGTGGCAAGTGGCTGCTCGCCCCGGT 10610 30 100.0 36 .............................. CTCAAGGGGCTGAGCGGCATGGTGGTCCTCTCCGGT 10676 30 100.0 37 .............................. ACTGCGGGAACCGTCAATGGCGCTGGTCAGACTGGGT 10743 30 100.0 37 .............................. GGCGAGCAGTCTCGGCAGGAGTCGAGTATCCAGGCGT 10810 30 100.0 37 .............................. ATATCGAGGTTGAGCGTTTAGACAGCCGAGAACGCGT 10877 30 100.0 37 .............................. GGCGAGCAGTCTCGGCAGGAGTCGAGTATCCAGGCGT 10944 30 100.0 38 .............................. AAAAACGCTCAGATCAAGCGCTATCGCGCTCGCCTGGT 11012 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 11079 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.2 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGGGCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAGGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGATCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTYCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //