Array 1 138325-137258 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLOE01000005.1 Escherichia coli strain MOD1-EC5484 MOD1-EC5484_5_length_207877_cov_64.746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138324 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 138262 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 138201 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 138140 29 100.0 32 ............................. TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 138079 29 100.0 32 ............................. CGCCCATCAGCACCGCGCAGGATCAGGAAACC 138018 29 100.0 32 ............................. CGGCCCGCGCGGCCGCAATTGAGGCCGGTTTG 137957 29 100.0 32 ............................. CCACACACATCGAGCTGGTGGGGATTAATGCT 137896 29 100.0 32 ............................. TTTTCCACCAGTCGCAGTGGGAGCAAAAACTG 137835 29 100.0 32 ............................. CGCTGCTGTTCAGCGGCAATCAGATCAGAACC 137774 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 137713 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 137652 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 137591 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 137530 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 137469 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 137408 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 137347 29 96.6 32 ....................A........ CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 137286 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAAGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 164846-164024 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLOE01000005.1 Escherichia coli strain MOD1-EC5484 MOD1-EC5484_5_length_207877_cov_64.746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164845 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 164784 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 164723 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 164662 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAATCC 164601 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 164540 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 164479 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 164418 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 164357 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 164296 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 164235 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 164174 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 164113 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 164052 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //