Array 1 264527-265409 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGVB01000002.1 Escherichia coli strain SCEC020066 NODE_2_length_418099_cov_75.2421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264527 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 264588 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 264649 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 264710 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 264771 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 264832 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 264893 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 264954 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 265015 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 265076 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 265137 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 265198 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 265259 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 265320 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 265381 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291107-292171 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGVB01000002.1 Escherichia coli strain SCEC020066 NODE_2_length_418099_cov_75.2421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 291107 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 291168 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 291229 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 291290 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 291351 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 291412 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 291473 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 291534 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 291595 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 291656 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 291717 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 291778 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 291839 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 291899 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 291960 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 292021 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 292082 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 292143 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATACTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //