Array 1 357151-356450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCMO010000001.1 Escherichia coli strain ME2L-20-5 NODE_1_length_575775_cov_7.348069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 357150 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 357089 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 357028 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 356967 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 356906 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 356845 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 356784 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 356723 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 356662 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 356600 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 356539 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 356478 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 374282-372667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCMO010000001.1 Escherichia coli strain ME2L-20-5 NODE_1_length_575775_cov_7.348069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 374281 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 374220 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 374159 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 374098 29 96.6 32 ........T.................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 374037 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 373976 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 373915 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 373854 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 373793 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 373732 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 373671 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 373610 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 373549 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 373488 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 373427 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 373366 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 373305 29 96.6 32 ...........A................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 373244 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 373183 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 373122 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 373061 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 373000 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 372939 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 372878 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 372817 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 372756 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 372695 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //