Array 1 1-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832492.1 Streptococcus sp. HMSC068F04 Scaffold86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 96.4 33 ....................G....... CCGGTAGTCATCGCCTTTAGCCCCCATAGCGAC 62 28 100.0 33 ............................ TACGGATGCAAATTTTGACAGCATCTTCAAAAT 123 28 85.7 33 ........T.....T..A..G....... TGAACCTGTTAAACCAGAAATTCCATCTGTAAG 184 28 96.4 33 T........................... TAGTTTTACGTCCTATCTCATGTACTTCTTCAG 245 28 85.7 33 .C.................AG..T.... TAGACTTCTTCGCTAGATGACGATTTACTTGTT 306 28 75.0 0 ..........T...T.T.A.TA....T. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 89.9 33 GTTTTTCCCGCACACGCGGGAGTGATCC # Left flank : | # Right flank : CTATTAATTAGGAAACGCCTGACTTTAGCTAACAGTATGGTACAATTTAATTGAATTAAGAGTGAATTTTTTGTTTTTTTATGGAAAATAATCAATTTACATTTATCCTATAGTTAATTGTTTGCACGTAGATCAGATGTAATCAAGGATTGTTATTGCTCGATTTGAGAATAGGAGCATTTGTTATTATCTCTAATTGTACAATTGTTAAAAAAACAATTAATCTATTTCGGGAGTTTTAAAGATTGTAGATATAGAAAGTAGTAGTTTGATGGAGAAACAAACAAAAGTTTAATGCTATCGAATGACATATGATTATGGCATTAATCCGTTTGTATTTACTGAAGATTATGAATCCACACCAGATTTGTTGACTGAAGATGGCTGTATGATTCAATACGGCAACATCTAAAAAAGAATTGGGCTGATAGGATTAATTCTGGTGGTATTGATGCTTATATAATGGCAATTGCTAGGCATTCAAATGATGGTGGTAAGTG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGAGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 277-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832539.1 Streptococcus sp. HMSC068F04 Scaffold459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 276 28 100.0 33 ............................ CGCTTCGACTGAATAGACATAAGGAAAATCGCT 215 28 100.0 33 ............................ CCCTAAAATAGATCCTAAGACAGGTGAAGAACT 154 28 100.0 34 ............................ CAGACCGTTTTGGAATCGCAGAAATATATCCTTA 92 28 100.0 33 ............................ TAGCGACGTTGTGGTTGAAACTCTGTTTTAGAG 31 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 5 28 100.0 34 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATTATTGAGATTGGAGCAGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTCTAAATTGACAGGAATTTCTAAAACCTTATTAGATAAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTATTTATTGGTGATTTAACTATAGTCGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTAGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGAATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGGCATATGGGATCGAGGATCAAGTTCCTCATAGAGCGTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTTCATTGGGACCTTTTAGT # Right flank : CTGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 212-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832542.1 Streptococcus sp. HMSC068F04 Scaffold594, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 211 28 100.0 33 ............................ TAACAGAAAAAGACTCATTTTTAGAGTCTTTTT 150 28 100.0 33 ............................ CATTGTTATTGGAACATGGTTTTGACACTCTAT 89 28 100.0 33 ............................ CCAGCTGGCAAGAGGTATTCAACGTTTCGACCT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : | # Right flank : C # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //