Array 1 5615-6252 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDED02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0016 NODE_3_length_193798_cov_21.653242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5615 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 5676 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 5737 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 5798 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 5859 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 5920 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 5981 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 6042 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 6103 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 6164 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 6225 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22893-24387 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDED02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0016 NODE_3_length_193798_cov_21.653242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22893 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 22954 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 23016 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 23077 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 23138 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 23199 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 23260 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 23321 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 23382 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 23443 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 23504 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 23565 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 23626 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 23687 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 23748 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 23809 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 23870 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 23931 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 23992 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 24053 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 24114 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 24175 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 24236 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 24297 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24358 29 93.1 0 A...........T................ | A [24384] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //