Array 1 288864-290388 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHWZ01000004.1 Sulfolobus acidocaldarius strain DP-5 NC0071814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 288864 24 100.0 36 ........................ ATCATTGGAATTGGGCTAGCCCTATTTTTCTTGATA 288924 24 100.0 35 ........................ AGTTGGTAGTGGGCAGATATCTAGCCCTGACCACT 288983 24 100.0 36 ........................ TGATGTCGAATACCGGAGTCAAGATGTTGATGAAAA 289043 24 100.0 37 ........................ AAATAACGAAGATTTAAGTGGTTTTGAACCAAGAGAA 289104 24 100.0 37 ........................ TGATCACATGTTTTATCGGTAGTACATAATGTAGAAA 289165 24 100.0 35 ........................ GAGGAGTTTGATAAACTTTTGGAATTTCTTGAGAG 289224 24 100.0 34 ........................ GAAATATAGCAAGAGTTCTGTGGTCGCTATATTA 289282 24 100.0 37 ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 289343 24 100.0 35 ........................ CTCAAAAATATAATGCGTAAGCTTAAATACCCAAC 289402 24 100.0 36 ........................ TTTTTATTCTATATTTGAATAAAGCATAAAGTAATC 289462 24 100.0 35 ........................ CTAATATTAATGGCAGTAGAAGTCTCGAACAACAC 289521 24 100.0 35 ........................ TATCTCGCAATAAATGAGAGAGAGTCGGCGAGTGT 289580 24 100.0 37 ........................ TATGTTTGTTGTATTGCTAGCGTAATATTGTATTACA 289641 24 100.0 36 ........................ ACACAATATCTTAGTCATTACTGGAATGACTACAAC 289701 24 100.0 37 ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 289762 24 100.0 35 ........................ TGTAGTAAATTGATATAATCGGATTGAAGAGAGTG 289821 24 100.0 34 ........................ AGGGATATCTGGAAGTAATACACCAGTACTATAC 289879 24 100.0 37 ........................ GCCATTCAACTCAAAACTTATAGAAGATTACGAAATA 289940 24 100.0 37 ........................ CCAAATGCTAAAAATAGAAAAGGTAGGAGAGTTATTA 290001 24 100.0 37 ........................ CGGTCTTCCAAAATTACTTAATGCTCTTGATAATAAA 290062 24 95.8 37 ......................G. TAAGGCTAATTTTGATCGATAAAGATGAAGAAGAAAG 290123 24 100.0 38 ........................ TATCTAACCCTCTCTTTTTCAACTCTTTGAAGATAAAA 290185 24 100.0 37 ........................ CCTCCCTGATATTCACCTTCTCCATTTCCTGTAGCAA 290246 24 100.0 36 ........................ ACCAACTCTCAATTACTCATAATATTCAAACTAAAT 290306 24 100.0 35 ........................ ATTCCGACTTGCTTAAATTCAGCTTTTTTGTACAA 290365 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 26 24 99.8 36 GTTTTAGTTTCTTGTCGTTATTAC # Left flank : TTCCAGTTCTTACCACCTCCAGAGGTAGATTTGGGTACAACGAGAATGCTATTGCGGGAACGAAGAACACAGTTATTATAGGTGTGATAATTAGTAAAGGCGTTACTTCACTTAAATGAGGGACTGCCGTCAACGCTTCAATAATGGCTATAACGGTGAGAAAAATGGGTACATACGCTGGAAGCAGCAAATACAGGAGAATCTTCGGATTACTCTTCACTATGTCAATTAGTCTCGTCAATTATCCTCATAAACTAAATCAAAATATTGAGAGAATAAAAACTTTTTCCTTATTTGTTACAGCAGAGTTGAAGGAGGGAACATTTAACGTTGCAGACTCCCCCTCCGCCGAGATTGGATCAATATGGTAATCAACTTTGTATGAGTACTGATTCTCATAACCACACAAGGGACACGTTATAACCCTACATAAGCGATAACATTTGGGACGTAAAATTTTGCTTCAAAATTAATATATGTGTCATGATATTTTACATGGA # Right flank : AC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTGTCGTTATTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 36578-35920 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHWZ01000006.1 Sulfolobus acidocaldarius strain DP-5 NC0071816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 36577 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 36513 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 36446 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 36382 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 36320 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 36257 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 36196 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 36130 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 36068 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 36005 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 35944 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : TTCTTGCCCTACTGCAATCCCCTAAGGCAAGGGAGTCTTTATGTAAGGGAGATATAGGTGTTGTATTGAAAACTTTTCAGTATGTCAGACCTGTTAAATTTAGGTCAAATACGTGGGTTTATAAGTCTATTTATAAATATTTTGATAAACATATTTTGAAAAATAATTACAGATTGCCTGAGATGGCTGAAGAACTTTTTAAGTTTACGTTACTAAAAACATAATTGTAGGTTTGATGAATCGCACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATACACAACCATCTTTCAACTCTAGTTAAGCACCATGCGACCAAAAAACCTAAACACAATTACTAGGACTTAAGGTCGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4564-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHWZ01000005.1 Sulfolobus acidocaldarius strain DP-5 NC0071815, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 4563 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 4501 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 4445 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 4382 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 4324 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 4263 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 4197 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 4137 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 4074 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 4015 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 3955 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 3896 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 3837 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 3777 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 3716 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 3655 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 3596 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 3538 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 3476 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 3417 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 3359 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 3300 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 3240 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 3181 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 3122 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 3063 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 3003 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 2943 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 2883 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 2823 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 2765 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 2707 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 2649 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 2590 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 2531 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 2470 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 2412 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 2353 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 2294 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 2235 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 2176 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 2116 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 2053 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 1994 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 1936 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 1879 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 1815 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 1757 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 1699 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 1641 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 1583 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 1524 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 1465 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 1404 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 1343 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 1283 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 1224 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 1164 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 1104 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 1039 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 979 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 919 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 861 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 802 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 744 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 685 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 625 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 565 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 503 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 441 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 382 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 324 24 100.0 36 ........................ ATCGGGCAGGTAGAAAGTCGCTAGGATCTCAGCGAT 264 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 205 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 143 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 84 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 25 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 77 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : CT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 16931-21555 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHWZ01000005.1 Sulfolobus acidocaldarius strain DP-5 NC0071815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 16931 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 16991 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 17051 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 17109 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 17172 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 17230 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 17289 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 17349 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 17408 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 17466 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 17525 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 17585 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 17643 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 17705 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 17765 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 17823 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 17881 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 17944 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 18002 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 18062 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 18125 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 18186 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 18243 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 18303 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 18361 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 18423 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 18481 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 18541 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 18599 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 18662 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 18725 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 18786 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 18844 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 18905 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 18965 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 19027 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 19087 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 19146 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 19204 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 19264 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 19324 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 19383 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 19444 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 19503 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 19566 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 19625 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 19682 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 19740 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 19799 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 19859 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 19918 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 19976 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 20037 24 91.7 37 .......T.G.............. TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 20098 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 20157 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 20216 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 20274 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 20333 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 20392 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 20451 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 20513 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 20573 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 20633 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 20692 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 20751 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 20812 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 20875 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 20936 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 20995 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21054 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21113 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21172 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21231 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 21291 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 21351 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 21412 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 21472 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 21532 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 78 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : CACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 132553-132274 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHWZ01000005.1 Sulfolobus acidocaldarius strain DP-5 NC0071815, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 132552 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 132490 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 132429 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 132363 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 132299 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //