Array 1 133947-137900 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKE01000011.1 Clostridium sp. TM06-18 TM06-18.Scaf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================== ================== 133947 29 96.6 32 ............................C TGCCAGAAATATGTGAACCAGATTGAGAATAA 134008 29 100.0 32 ............................. TGATACTGCAAGCGGTTTTTGACCTGGTGAAA 134069 29 100.0 32 ............................. ATGTCACTACCCAATCTATTATACCCAGTATA 134130 29 100.0 32 ............................. AGCTGGCTGGCTACAGTACCGGATGATATGGA 134191 29 96.6 32 ............................C ATCACTGTAGGCACGAATGTGGCCAGGATTCT 134252 29 100.0 32 ............................. AGGTGTAGTCTCAAACATCTGGGATGGGGATA 134313 29 96.6 32 ............................C ATGAGTTCTCGAACCGTCAAATCCCAACCACT 134374 29 100.0 32 ............................. ACCGATGTCAGAATCAAGGGCATCAATAACCT 134435 29 100.0 32 ............................. CCAAAACTTGCACATCCGACAACAAACACGGT 134496 29 100.0 32 ............................. GAGTCCTTGCAGAGGGTGACATCTCCTAATTT 134557 29 100.0 32 ............................. GTCCGCGTTGATCTGGTATAAATTCACGTTCA 134618 29 100.0 32 ............................. ATCATTCGTCCTCCAGCCATCTGTTATCCAAA 134679 29 100.0 32 ............................. CCGCGCGGTGCGCCCACTTGCCAGAAAGACGA 134740 29 96.6 32 ............................A TACCTTTTTTATAGCTTTATGCGTCCGTCTGT 134801 29 100.0 32 ............................. GTCCACCAGTGCATGTATTTCTCTGCACGAAG 134862 29 96.6 32 ............................C AGGCTAGCAGCAATTCCTGCATAGTCTATAGT 134923 29 100.0 32 ............................. GTTCCATCATTAAGCTTAAATGCTCCAACTAC 134984 29 100.0 32 ............................. GTTATCGACCATGAATTGATTGCAGGAGAGCA 135045 29 96.6 32 ............................C AAAAAAAGCAAGTTTTCACTTGCTTTCCAGTT 135106 29 100.0 32 ............................. AGGCGAACTTACTTATTCTCTTTCTTTTTTAG 135167 29 100.0 32 ............................. CGGTAAGCAATCTGTTTGGAGAATAAGCCTAT 135228 29 100.0 32 ............................. GAATATCTTGAAAGCAGAACGGACAGCAGCCC 135289 29 100.0 32 ............................. ACCTCACAAAGTTTACTTTTCCCCCGTCCTTA 135350 29 96.6 32 ............................C ATGACATGCGTCTGATCGGTAACGGCTTTATC 135411 29 100.0 32 ............................. GTATTAAAAAAGGGTATAAAAAATACACCTCT 135472 29 100.0 32 ............................. AAGCTCCAGAAATATTGCTTTTAAAAACGATG 135533 29 100.0 32 ............................. TGGGAAACGGGGGCATACAGCCGTCAAACTTT 135594 29 100.0 32 ............................. ACACCTGGTACAATCTGCTCCACAAACCTCTG 135655 29 100.0 32 ............................. GAAGACATGAGCAAAAATTATAAGGACTGGGA 135716 29 100.0 32 ............................. ATCCATTTACAACTACCAAAATGTTGGGACGA 135777 29 100.0 32 ............................. GAGTGCGGCGGGTGCCATTGCTGGAACCGGTG 135838 29 100.0 32 ............................. AGCTTTTTCCACGTTTTCGGGTTTTGGTCCAC 135899 29 96.6 32 ............................C GGTTCAGGATCTGTTTGATGCAATGTCAACAG 135960 29 100.0 32 ............................. CCAGGCTTCCAGCTTCTTCCGCGTTTACATGC 136021 29 96.6 32 .....................G....... CATTCCGTCACATCCTTATACCTCATTTTCGG 136082 29 96.6 32 .....................G....... ACCTTAACGCCTTCTTTTGCATCACCGCAAAG 136143 29 96.6 32 .....................G....... ATGTCTTTTGCTTCCAGGACTTCCACTAAAGT 136204 29 96.6 32 .....................G....... ATTTCACGTGCGCGCCATCTGATTAATGGCAA 136265 29 93.1 32 .....................G......A AGCCGGGTTTGTTCCATCTCCCGACTTTCCAT 136326 29 96.6 32 .....................G....... AAGCCCTGATTGGATTTGCCTTCTTCCAGGTA 136387 29 96.6 32 .....................G....... TGCCAGAAGCGTTCCGGATCTTCTTCCGCTGG 136448 29 96.6 32 .....................G....... TATGGGACAAGGAAACCCAATATACTCAGATG 136509 29 96.6 32 .....................G....... CCGGCAGACATGATTTCAGGAAAAACAGCCTA 136570 29 96.6 32 .....................G....... AGATGAGGTGTATTCAAAGTTTTCCCCTGTTT 136631 29 96.6 32 .....................G....... ATGAATGCATGGCAAGATGTGAGACAAGCGGA 136692 29 96.6 32 .....................G....... GCAGGAGCAACCATTGAGAACGGAGCGATTCT 136753 29 96.6 32 .....................G....... GTAATCGGCCGCTTGGAAGTGCCTGGCGGCCG 136814 29 96.6 32 ............................C GGGAGTATGCACCGCCAGAAAAAACACGGAGA 136875 29 96.6 32 ............................C GCTGATCGGACACAATCGCTCTGCTTTCTCGC 136936 29 96.6 32 ............................C AGGTCGAAAGTTCCAAAGCCTGCGTCAAAGAT 136997 29 100.0 31 ............................. GTTTTGACAGGTTATTGTTGCCTGTTTTTTT 137057 29 96.6 32 T............................ TTGACCTAAGGGAGTATGTGCATTATAATATT 137118 29 96.6 32 ......G...................... TCCCTGGAAGATCATGGAGATCGTATCTGGTG 137179 29 93.1 32 ......A..............G....... CATGCTCATTGACATTTGCTCCATCTGAAATA 137240 29 93.1 32 .....................G......C CGAAGACCAGAGAGATTATGAGCATCGCTTTT 137301 29 96.6 32 ............................C ATCCGGAACGCTTTATGTATGTAGCTGACGAG 137362 29 89.7 32 ...........A..G......G....... AGGCAGCTTAGCCCATCCGATCAGCCCGTCGT 137423 29 86.2 32 ...........A..G.A....G....... TACACGGATACGGCGGATGAAGGCTCCGATAA 137484 29 89.7 32 ...........A..G......G....... GTGTTTACGCACTTATCAATAGGTTTACCAAA 137545 29 89.7 32 ....C......A..G.............. TTTTCACCATCAAAATACAGGATCAGCTCGCC C [137549] 137607 29 89.7 186 ...........A..T.............C CATATCATGAAGGTGTACAGAGTCCGCAAGCCGTATTCCCCACATAAACAAAGCAACATCTAATTGCCCAGTCTGTAAAATTTAAGCATTTCTTATGTGCAGATGCTCTTTGTAAAAGCAGCATTAATCTCTTGACAAACCAACTCAATATTGTTAGTGTATGGATGGATAAAATAGAACGTATCT 137822 29 65.5 21 A..G...TT....AC..A......CT..C TGATTAAATTCCAGAGATATA Deletion [137872] 137872 29 72.4 0 ...........A.CC......C.A..ATC | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================== ================== 63 29 96.4 34 GTATTCCCCGCGTGAGCGGGGATGAACCT # Left flank : AGGATGAGATAATAGAAGTCGGTGCGTTAAAAATAGAGGCAGACACTGTCACAGAAGAATTTTCTATGCTTATCCAGATAAAAGGTGAAATTCCAATAGAGATACAAAAACTGACAGGCATTACAGAACAGGAATTGCAAAGTCAGGGGAGACCACTGGACGAAGTACTTAATAAATTGTTTGAATTTGCCGGAAACAGAGTTATTATAGGACATAATGTTATGTTTGATTATAATTTCATCCGCATTGCCTGTCGGAAACTGGGAATAGAAATGCAACTGGGAACTGCTTCCAAAGATACATTGGCATTGTCGCGGAGAAAAATAAAGGGGGTGAGAAGTTACCAGTTGGAAGCACTTATGAAGCATCTGGGATATGAAGTTTCAAATGCACATAGGGCATTGACGGACTGTTATCTTACTTATCAGTTATATCAGAAGTTAAATGAAATGTGAAAATGGGTGTTGGAAAAAGTGAGATAAAATAAGGCTTTTTTTAGT # Right flank : CAACAAAAGAAAGCAAAGTCTACAAAGTTGTATCGATAAGTTGTATCTCTATCCAGCCTTGACGCCCCCAGCCTGCTGTGATAAAATCAATTTAGTGTTTTAAGGAGAAGTGGCGAGAAAATCTGCCGTGAATGTGCGAGCTGCCAAGCCTTTAATAAGGCCGGCAGCTCTTTTGGCATTGTTATGCATCCTATGAAAATTGCCAGGGGATATGTATGGGAGAAAACGGACAGGAGAAAGTAATTGAAAGACAGGTATATCAGACATTAAAAAGGCGGGTACGGCTATGGCTAAAAAGATCAAGATACGGAAAGTAAGCGCATGGACTATGGGGATAACTGTAGTGCTGGCGATCATGTTTGCGATCATTTCTTATAAGAGTGAGAAAGAATTCAGAACGCTTCGCATGACTACAGAACAATATATTGCCTGTGAAAAGGCGGCAAAACAGCTGCAAAATGGTTCTGCTTATCTGACAGAGCAGGTTCGCCTGTATGCGA # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTGAGCGGGGATGAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //