Array 1 421989-423603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023484.1 Dickeya sp. Secpp 1600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421989 29 100.0 32 ............................. ACATTCACTATTTCGATTTAAAGCGGCTTTGG 422050 29 100.0 32 ............................. GTAACAGGACCCAGTATCAGACTGGCGGAGGA 422111 29 100.0 32 ............................. TCTGCGCTTTTCCTAATCGTTCCGTTCCTGGC 422172 29 100.0 32 ............................. TCTGTCGGGCCAGACCATTTGCCATCCGGTCC 422233 29 100.0 32 ............................. AGGCGGCTGACGGTGCCGAGGCCGAGCCAGAT 422294 29 100.0 32 ............................. TTGCGTAAAAATTTCGTCTTCAATGTAAATTT 422355 29 100.0 32 ............................. AGCGCCGGGCCAGGCTGCCTAGCGTTAAGCCC 422416 29 100.0 32 ............................. TGTCAACGAAAAAGGCAAACTGGACCAGGCGG 422477 29 100.0 32 ............................. CTCATCGCGGCCGACCAGGCTCGTCTGAAAAC 422538 29 100.0 32 ............................. TTGTTGGCCTGGCTGCTGCTGAGCGTTTCGTA 422599 29 100.0 32 ............................. GATGGCCGGACCATACGGCTATGCGATGCCAG 422660 29 100.0 32 ............................. CGCATGAGAACAGACACACTGAATGAGCGCAT 422721 29 100.0 32 ............................. CCGTCACCTCTAGATTTCTCGGCGTCGGGCGC 422782 29 100.0 32 ............................. ATGCGCTTAAAGAGTGGGGAAAGCTGGATAAG 422843 29 93.1 32 ............AG............... GGCCAGCCCGGCACGTTGATCGAAGAGGGCAT 422904 29 100.0 32 ............................. AAACAGCGCGAAACTCTACGTGCAACTCTCGG 422965 29 100.0 32 ............................. GCTCAACAGTTTGTCACATCAACGGGGCGGCA 423026 29 100.0 32 ............................. CAGGTGGGCTGGCGATGATCGTCTCCACCAAA 423087 29 93.1 32 ............AG............... CACAACGCAGATCGCAACGATGGCCGCTATCC 423148 29 93.1 32 ............AG............... TCTGCTACATGGACTCCGACTGGTATGACATC 423209 29 93.1 32 ............AG............... GTCATAGGCGCCGGGAGCGTCGGCAACTCTCT 423270 29 100.0 32 ............................. AATGCGCTGATTTATCGCCTGACTCGCGATAT 423331 29 96.6 32 ............T................ GAGGTCTATGACGACCGCACTGGAACGAACCG 423392 29 100.0 32 ............................. AATGGCTGGAGTGGGTCGCAGGCGATAAAAAA 423453 29 93.1 32 ............AG............... GTGCAGAAACGGGCTTTAGTGGATGGGAATCG 423514 29 100.0 32 ............................. ACACGACGGCCGTTTACCTGGTTGTACAGGGC 423575 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCACCGCCGGACGCGCAACCGCCGGCCATTCCTGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAACGTGCCGCCGCGCCTGCGTGGTCGGCTGGCGATCTGGCTGCTGGAGGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAATGTTCTTTAACAACCGGAAAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATATTTTTAGA # Right flank : GTTGATTAAGATAGCCTGATCGGCGACCGGTTACGGAAAAAGCCACTACCCAGGCTTGGGTTAAAACGAGTGCTAGTCGTCCTCGCTGCCTGATGCTTTGCCCGAGGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGTGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGCACGCCATCCACAATTCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAATGACCGATAAGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 689750-691122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023484.1 Dickeya sp. Secpp 1600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 689750 29 100.0 32 ............................. CTATATTTTTACGACAAAATCCCTTCCAGCGG 689811 29 100.0 32 ............................. GTAATAGGCACATCATTACAAGGTGAGGTATC 689872 29 100.0 33 ............................. TTCTGAACGTCAGTAGGTTTAATATTTTTATCC 689934 29 100.0 32 ............................. CTCATCGCTCAGCTTTTTCCAATGCTCTTCAG 689995 29 100.0 32 ............................. AAGAAATCGGGCTGCTATTTGATGCTATGAAA 690056 29 100.0 32 ............................. GCGCCGAGGTCGAAAAATGGGAGCCTCAGTAT 690117 29 100.0 32 ............................. ATGGGGAAAACGAATAATGCAGCACGGAACAT 690178 29 100.0 32 ............................. CTGTGGTCTGATGTCAAGGCTCAATGGGATGC 690239 29 100.0 32 ............................. AAATGCTTTCAAGCAGATGCCTATGGATTTGG 690300 29 100.0 32 ............................. AACTGGTGGAGCAGCAGAACCAGAAAGCCCAG 690361 29 100.0 32 ............................. TTGAGGCCAAATTTACGGCCTACGCAGAGAGC 690422 29 100.0 32 ............................. CCGCTAACACTGACCTTACCGCGCAGAAGAAT 690483 29 100.0 32 ............................. CGTACTTCACCGAGTAAAGCCAGTGCGGCGCA 690544 29 100.0 32 ............................. CAGGACAAACACTTCATTATGTCATGGGTCCG 690605 29 100.0 33 ............................. AACACACCGTCGGCGCAATCCTTCCGAGTCCGC 690667 29 100.0 32 ............................. GGCTTGCGATGGTTATCGAAGCCCTTAGCCAT 690728 29 96.6 32 ............T................ GCTGAACTTGCCGTTGAAAGTGACGGACAGAA 690789 29 96.6 32 ............................T CCCTGCCGATACAGGCCGCTGACCGGGTGTAC 690850 29 100.0 32 ............................. GAGTAAAAACGCAATGAACAACTATGCGTTTG 690911 29 100.0 32 ............................. ATTGTGATGTGTGGATCGGGCTGTATCGTGAC 690972 29 100.0 32 ............................. TTAAAGAGTGTTTATTTTGAAACCACTCCTTG 691033 29 100.0 32 ............................. AGATTCGTGGATTGGCGTGGATCGTATTGAGA 691094 29 89.7 0 .............T...........G..T | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCTAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCAGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCATTTAATTTCTTTTTGATGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTGAAATGCCCGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGATGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTAACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4169215-4169963 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023484.1 Dickeya sp. Secpp 1600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4169215 28 100.0 32 ............................ TGCTCAATAGAGCCACCATCGCGCAAGTCACT 4169275 28 100.0 32 ............................ TTTATCGTCCGGCGTGGTACCCTGAGCGCGTA 4169335 28 96.4 32 ...........A................ GTGCTTTGCTTCCCACGCCTTAACATCACGAT 4169395 28 96.4 32 ...........A................ ATGAGCATATCCGCAACGCGGTGCGCGCATGG 4169455 28 96.4 32 ...........A................ ACAACCTCGGTTTCCGTATGCACCCGGTTGTA 4169515 28 96.4 32 ...........A................ TTAACGATATTATCAAATGGTCTCGCCTGTAC 4169575 28 100.0 32 ............................ AATCCAAAATTGCTGGATCTCACCATCATCAT 4169635 28 100.0 32 ............................ GGCACCGTGTAAGGCTGGCTTGCTGAGAACAG 4169695 28 100.0 32 ............................ GTTGCGCGGCACTCCGCAAGAGCGCGCTCAAT 4169755 28 100.0 32 ............................ GATGCAAAAGGCAAGATGCGGCCAATGCAGGA 4169815 28 100.0 32 ............................ TCGGCCAGCTTGGTGAGGTTGCCGAAGTACTT 4169875 28 100.0 32 ............................ GTGGAAAACGGGGATAACTGCGTGGGCTCCGT 4169935 28 71.4 0 A...........AC.......A..TCCC | A [4169955] ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.7 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCCACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAACCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAACGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCCGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAATAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAGACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGCTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGCGCGCGCGGCGCGTTACCCTGCTGCGCCAACCCAAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4175600-4174731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023484.1 Dickeya sp. Secpp 1600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4175599 28 100.0 32 ............................ CAGGCCGCCTACTGCACCGGTAATCAGGTCAC 4175539 28 100.0 32 ............................ GCCGATGGTCAGCGGCAGGACGATGTGCTGAT 4175479 28 100.0 32 ............................ GCAAGAAATTTGGCGTGTGGCCGAAAGGGCTG 4175419 28 100.0 32 ............................ ACCTCCTAGTTTATGGCCATGGTCGCGGAAAT 4175359 28 100.0 32 ............................ TTGTCAGCATAAATGCCGTGCTCCCGATTTAT 4175299 28 100.0 32 ............................ TGCGAATGTGAATTGGACGGCGAACAGTGCAT 4175239 28 100.0 32 ............................ GCCAAGGCTGGTGACCTATCCGCGCTCCAGTT 4175179 28 100.0 32 ............................ GACAACGAAGCGAAGCGCGATATCACGTTCCA 4175119 28 100.0 32 ............................ GTTGAAACCGCATCCAGCAGCGCGACAACCAC 4175059 28 100.0 32 ............................ AACTCCAACAGATGAAAACAACGGGGCGTCAT 4174999 28 100.0 32 ............................ CACGCCTTAACATCACGATGCAATTCGCTATG 4174939 28 96.4 32 ............A............... GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 4174879 28 96.4 32 ............A............... AGTGTCGATAACACCATGCCCTTGTGACCCCG 4174819 28 96.4 32 ............A............... GCTCAGGTCTTCCATTGCTTCCAGCTCGTGAA 4174759 27 75.0 0 ...........CAC......A..-..CG | AG [4174736] ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.6 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAACGGTTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGTCTCTCCAATGGGCAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCACAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATAGCGTTTTTTCTTTAACAATCAGGTGATAAGCACGAGTTCGCTACA # Right flank : GGTTTGCTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGCCGTGGCAAAGAAGCGACACGGTTTATCACGCACGAAACCACTCACCTACCTGATATATATCGCTAATCAATAACAAGACACCCTGGCTGTTTGCCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCACCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGCCGAACTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4184599-4186547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023484.1 Dickeya sp. Secpp 1600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4184599 28 100.0 32 ............................ TAATCCTTCTAATGCTGGTTTTGATAAGTGAT 4184659 28 100.0 32 ............................ AGTGATGCCCCACAATGTGGGGCGTATAGAAT 4184719 28 100.0 32 ............................ GTAACCAACTCTGATAATATTAAATCGTCGGC 4184779 28 100.0 32 ............................ TGGAAGGAATGGCTGAGCGACTCAATGCCACG 4184839 28 100.0 32 ............................ AATTAACCGTTCTCTCCTGGTAGGCAAAAACT 4184899 28 100.0 32 ............................ AGCGTATGCCGATGAAAAGACTGGGATATATT 4184959 28 100.0 32 ............................ TTGCAGATGCGTTTGTCATGGCATATGCGCCA 4185019 28 100.0 32 ............................ AGCCGTGACAGCAAAGTAATCAAAACTTCCCT 4185079 28 100.0 32 ............................ AACAATCTTATTGAAATGTTTTACAGGATTTA 4185139 28 100.0 32 ............................ TGATAGCGGCCGCGCCGTGCCGCCCGAGTGGG 4185199 28 100.0 32 ............................ TGCCGCAACCAGCAATGATTGGCGCATTGGCG 4185259 28 100.0 32 ............................ AGTAGAGTCACTCGCGCCACCGGCACCAACCG 4185319 28 100.0 32 ............................ ACATTTATTTCTGGGAATTTGTCGATTATCTC 4185379 28 100.0 32 ............................ GATATGGTGCGAGCCAAGCTGTACAAGGCGAT 4185439 28 100.0 32 ............................ CAGGAGATTTACGGCTCACCGGAATACATGGC 4185499 28 100.0 32 ............................ ATGACGGGAGTGGGGTCACCAAACGAGAACGA 4185559 28 100.0 32 ............................ GATATGGTGCGAGCCAAGCTGTACAAGGCGAT 4185619 28 100.0 32 ............................ CAGGAGATTTACGGCTCACCGGAATACATGGC 4185679 28 100.0 32 ............................ ATGACGGGAGTGGGGTCACCAAACGAGAACGA 4185739 28 100.0 32 ............................ CTGTGCGTCCGTGTACCCCGCCCAATCGCCGG 4185799 28 100.0 32 ............................ TGAGCGATATCACCATCCGGCAGTACCACCAG 4185859 28 100.0 32 ............................ ACCGCGTCAGCATCGATCAGAGTAACGTGTTG 4185919 28 100.0 32 ............................ GCCATTTTGCGTCTGGCCGTTGATGTTAATGG 4185979 28 100.0 32 ............................ GCACATCGTCGCGGCGCTACAGCACTTCGATA 4186039 28 100.0 32 ............................ ATCGCCACTGATATGCGCGCATTACACGAAAA 4186099 28 100.0 32 ............................ TCAATTCCCAGCGCGTTGCGGACGCGTTGAAA 4186159 28 100.0 32 ............................ TGTTTCGACGCCACGTAACTTGCTCTGATGGC 4186219 28 100.0 32 ............................ TCCCTGCGCAGATCGTGATAGCGTAAATCCTC 4186279 28 100.0 32 ............................ AAAGGGCCGGGCAACTTCCGCAACCTGTTTCT 4186339 28 100.0 32 ............................ CTGAGGATATCGAGTACGGCGATACGTTACCC 4186399 28 100.0 32 ............................ AGCTATTCGCTGCGCGACACTATCAACCAGGT 4186459 28 100.0 32 ............................ TGGCTACGTAGTGTTTTTGCACTGCTCGATGC 4186519 27 85.7 0 ....................G..-..CG | AG [4186537] ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.6 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CGTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATACTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATGAATTAGAAAACACGTAATCTACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGCTGGCGAAAATCGCCAATTGTGGGCCGAGATACAACGGGTTAGAGTCAACGAGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGAAGTGGCAAAGAAACGACTCTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCGACGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCCGACCGACGGGCCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAACGCGCTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //