Array 1 532125-531404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019721.1 Veillonella parvula strain UTDB1-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 532124 23 95.7 55 ........G.............. AATAAATTATAAACTCATCAAAACGATATATACTTATCATTATGTTAAATTAAAT 532046 23 95.7 53 ........G.............. TGACTAAGTGAAACTGGCGTAATAATTAAATCTGCAGTTTCGTTAAATTAAAT 531970 23 91.3 56 ........G............G. GTATCAAAGTGGCTAGGTGCGAATAAGGTTTTAGGCGTTAAATAGTTAAATTAAAC 531891 22 87.0 55 .....T..T.-............ AATACTCAACCCCTTTCGCTTTAGGTCTTGCCATTATATAAGCGTTAAATTAAAT A [531885] 531813 22 87.0 55 ........T.-.....T...... CGTCAAGCGTCATGAATAGCATTTTTTCAAAGCCGTTGGTGAGGTTAAATTAAAT A [531807] 531735 23 91.3 53 G.......G.............. ATAATTACGTTAGGTTTGGTACGTAATTACGTGCTTGATTAGTTAAATTAAAT 531659 23 100.0 54 ....................... AAGCTATTGTTTGAGGTCTTAATACATCAACAGGGACATTTAGTTAAATTAAAT 531582 23 100.0 54 ....................... CCTACATTAATACGTGCTGCATTATTCATGCTGCGGTATGGCGTTAAATTAAAT 531505 23 100.0 57 ....................... AAGTACCCTTTAAGGTCTATCGGTATTTGTTGATGGTTGGCGCTGGTTAAATTAAAT 531425 22 82.6 0 .......-.......T.A....A | ========== ====== ====== ====== ======================= ========================================================= ================== 10 23 93.1 55 AATCCCCTAATGGGGACGGAAAC # Left flank : GCTTACCGTTTACGGTATTGAAACGGTAAACGATTCATGATCGAGGAATCGTTATTGCCAAAAGTTGCAACAGTGCTTACCGTTTACGGTATTGAAACTTTTTCAACTAAATATTCTTTTTTCATAATATCCTGCTGCAACAGTGCTTACCGTTTACGGTATTGAAACGAGTAAGCTTCAAGCATACCACAAGTATCAATGATTAGGTTGCAACAACAATTAACGTTTATAGTATATTAATAGAACCATTATTTTTAGTTTGACATATTGATAGAGTTATCTCACTAATGCCAATGGTTCTATTTTTTTTGTTTATGGTATAATATAGCTAGATTTAAAACTCGGAAAACCAAATCTGCGCCGTTATGATAGTGGTGCGGTTAAATGGCGTTATTTTAGCTCGCTAAAGTGCCTTTTGGGGTGGATTTACAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAGAGACAGGGTTAAATTAAAT # Right flank : GCACTATCTTATTATTTGTAGATAGTGCTTTTTCTTATTTTATATAAATATTAATTCTTTAAGGCTGCCATTTTGAATATCCAAATCCCATCATAATAATGCTCACCACGAGCATGCCGTTACCAAGGGTAATGGTGCTTTCACTTGTGGCTAGACAGGTAATAAAGGATCCGATGCCCATAATGATTGTGCCTAGTATAGCTGATAGTTTATGAATTGCCATGATAATCACCCTTTGCTTTTACTAACAACATTAGGTTTAACAATATACGTAATGAGTGCGTACAGTAGGGCACCGATTACAATCCCGTTCAGCGAAGCCAGTCCGAATGGAATGAATTTAACACAGACCAATGCGATGGCCCATGTGATCCATGGAACTAGATTCCATTTTTTGAAAGTCGCTTTGTTGTAATCGATATATTTTCCACGATGAACCAGGTAAAAGTCCGCTAAGATAATACCGCATAGTGGCGGAACGATGATGCCTAGTGTACTTA # Questionable array : NO Score: 4.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.75, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCTAATGGGGACGGAAAC # Alternate repeat : GTTAAATTAAATAATCCCCTGATGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 533287-532383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019721.1 Veillonella parvula strain UTDB1-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 533286 35 100.0 39 ................................... TACTATCCAATTTGGGAACTATAGCAATACAATTTTTGG 533212 35 100.0 38 ................................... GTTCGCCCCAAAGTTTATCAAGACCATCTGTATTAATT 533139 35 100.0 36 ................................... TAATAATAAATATGAAAGAGTCGAAAGAATTAGGGT 533068 35 100.0 36 ................................... TATGAATACAACAATTAAACTTAAGATGACTAATGA 532997 35 100.0 40 ................................... GTCTATGTCATATGGTCATCACGTATTCGATGACCTTCTT 532922 35 100.0 37 ................................... TTAAATCCATTTGTATTTTAAGCATTGGTTTTTTAGA 532850 35 100.0 38 ................................... CTCAACACAAAAATAAATTGTGTCGTAATCGTTATTAT 532777 35 100.0 34 ................................... TGATTAGTATCTTTTAGCTTTTGAAGCCATTTAG 532708 35 100.0 38 ................................... GTTCCATATTGACTTCCATCTATACCAATTTTAGCCAA 532635 35 100.0 39 ................................... GGTAAACGATTCATGATCGAGGAATCGTTATTGCCAAAA 532561 35 100.0 35 ................................... TTTTTCAACTAAATATTCTTTTTTCATAATATCCT 532491 35 97.1 38 .C................................. GAGTAAGCTTCAAGCATACCACAAGTATCAATGATTAG 532418 35 71.4 0 .........ACAA...A......TA.....T..TA | A [532387] ========== ====== ====== ====== =================================== ======================================== ================== 13 35 97.6 37 GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : TTATGACACCATAGAAGAATATAAAAAAGTATTAGATAAGTATGTATTTTATATGTATAAATAGAGACTATATAGAGAAATTTATATACCTGTTTTTATAAAGGTTTCCATGCAAAATTTTATATATAGATTGAGGTTGTGAGCCTAAAATATAACTATATAGTTATAATCTTTATGCCTTAAAGATAAAAAAATAACCCGCCTAACAAAATTTTAGGCGGGTTATTTTGTTTAAACTATTTATTGAAAAAGATTAACTATCAAAATTTTATTAATAGTATTTCCTTAAAATATAATGAAAAGAAAATGAATTAAATATTGACGCAAAATATGAAAAACCTTATAATTACTATAACCTTAGAAAAATCATTTACCACCAGTATTTACCTATGCTCATCGGCATTTTTAATCCCATGGGAGTCTAATTTGACTGTTTACGGTGTGAGGTTTGCTAAAACCTATTTTTAAGCCCTATGAATACTGGCCTTCTGAGGCATGCT # Right flank : GAACCATTATTTTTAGTTTGACATATTGATAGAGTTATCTCACTAATGCCAATGGTTCTATTTTTTTTGTTTATGGTATAATATAGCTAGATTTAAAACTCGGAAAACCAAATCTGCGCCGTTATGATAGTGGTGCGGTTAAATGGCGTTATTTTAGCTCGCTAAAGTGCCTTTTGGGGTGGATTTACAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAGAGACAGGGTTAAATTAAATAATCCCCTGATGGGGACGGAAACAATAAATTATAAACTCATCAAAACGATATATACTTATCATTATGTTAAATTAAATAATCCCCTGATGGGGACGGAAACTGACTAAGTGAAACTGGCGTAATAATTAAATCTGCAGTTTCGTTAAATTAAATAATCCCCTGATGGGGACGGAAGCGTATCAAAGTGGCTAGGTGCGAATAAGGTTTTAGGCGTTAAATAGTTAAATTAAACAATCCTCAT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 551458-549796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019721.1 Veillonella parvula strain UTDB1-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================================================================================================================== ================== 551457 35 100.0 37 ................................... TACCTTCTCGCCTGGTTTAATAGAACGAGATGTTGCA 551385 35 100.0 41 ................................... TGGCATCTTGGCAAACGCAACTAAATCTATCGGCATCGGTG 551309 35 100.0 36 ................................... TGCCAAAATAAAATAATTTTAATTAATTAAATGAGG 551238 35 100.0 36 ................................... GTATTCAACGCCGTGATACATATGGTCATATGACTA 551167 35 100.0 39 ................................... TTAAAAAATATCGATGTTGTATGTTGAAAGTTTTCTATC 551093 35 100.0 37 ................................... CTTGAATATAACCAACTTCGATGTCTTCTACATCAGT 551021 35 100.0 36 ................................... AAAATCTAAAGTCATCTTTTCGATCTTTTTGTTCAT 550950 35 100.0 40 ................................... GAGAAATAACTACCTAAAACTAATTGTGCAATAGCACAAA 550875 35 100.0 39 ................................... AGTGCACAAGACAGTTCACCCTTTCTCTTTATTTTAATT 550801 35 100.0 38 ................................... CGCTTATTTTCTTGTATTAAATATTCTAAATCTTTTTT 550728 35 100.0 36 ................................... CTATATTCAATGGAGAGTCTCACCGATGAGAATTAT 550657 35 100.0 38 ................................... CTATAGCGTTCTTTATCTACATACATCGTATCCATATC 550584 35 100.0 34 ................................... TCAATTAAATCAGTAGCGTTCCATTCTTCTTGAA 550515 35 100.0 40 ................................... CGCACAACTTCAGCTGGTACTAATAAATCGCTACGTTCTG 550440 35 100.0 40 ................................... GATTACTATCTTTATCATGGTGTTTCAGAATGATTTGGGA 550365 35 100.0 38 ................................... TTGAAAACCGGACGGTATACATCGACGCCTTCCACCTT 550292 35 100.0 38 ................................... TTGAAAACCGGACGGTATACATCGACGCCTTCCACCTT 550219 35 94.3 158 .............................G....G GGTGCGAGACAGCAGAGGAGCAAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACAAGGGTGATAAGGGATTCAGCTTACCGTTTACGGTATTGAAACATCGGTTGCACACGTTTATCACTAGCGAATTTCGCGATA G,C,C [550184,550186,550188] 550023 35 80.0 158 ..........TG.................GCGC.G AAGGGTGCGAGACAGCAGAGAATCAAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTAAAGGTAAAACGAAGGTGATAAAGGATTCAGCTTACTGTTTACGGTATTGAAACTCTTTATCAATTTCAGTAGCTTTAGGTAAATTTACA 549830 35 82.9 0 .............................GCGTCG | ========== ====== ====== ====== =================================== ============================================================================================================================================================== ================== 20 35 97.9 51 GTTGCAACAGCTCTTACCGTTTACGGTATTGAAAC # Left flank : GCTGTTGATGAAGCAGTAGATTTTGTACTAGACGAATTATTTGATTAGGGATAGGTGGGTGTTGTTCATGTCAGCTTTAGTAGGATTATTATTGTTGTATATATTCGCTTGGTATCTCGAGGATTAATAGTAAAAGTAATGATGGAATTTAATTGTATATAGGCCTATTCGTATGATGTCATATGGGTAGGTCTTTTTTATATGTTGCAGATAGACTAAATCCTTTTCTAAGGTATTAAAATTAATTTAAAGCTTGCTAAACTTAGATAATACCAGTATTTTAATAAAAATAGGACAAAAAGAAAATGATAAAGAATATTGACGTAATATTCAGAAACCCTTATAATTACTGTAACCTTAGAAAAATCATTTACCATCAGTATTTACCTATGCTCATCGGCATTTTTGATCAAATGGGAGCCCAATCTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTATTTTTAAGGCCCATGAATACTGGCTTTCTGAGGCACGCT # Right flank : AAGAATGGGAATATCTAACTTAAAAATTACATAATAATAAAGAACTGTGTTCTTGTGTATGTTACACAAAGATACAGTTCTTTTTTTGTTCCTAGTTTTTCTGATTAGTTTACTTTTAGTATGATTCGTATAATGAACTCAACAAGTTTAATTGGTCTTATATAGGAGGTAGTATATGGCAATGTTGTTTTTAACTTTATTGGTGTGGTTTGTATTACCATCACGGAATGATTATTAAGGAGGGTATTATGGAAAATTTACAGCAAGAATTAAAGTCTATGTTGTCCTTATCAGGGCGTATGAATCGTCGCTCTTATTTTATGAATTTGTTGATGATTATTGGTATTGGCTATCTTGGGGGCCTTTGTATTAGTCTTGCCCCTGTATCAAAGTTTTTCTGGGTATTGGGTTGGTCAATCATAGGGTATTCTGTTGTTCGAGAGTTAGCTATTGCATCGCGGCGTATTCATGATTTAAATGGACCAACTTATTTAGCAGGT # Questionable array : NO Score: 7.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-1.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGCTCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 4 554212-552738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019721.1 Veillonella parvula strain UTDB1-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================================================================================================================================== ================== 554211 35 100.0 37 ................................... TTATGGCTACTGCAGAAGTAGATCCTGTTCTTAAATT 554139 35 100.0 39 ................................... TCTCATTTTATTTACCCTCTTTATACATATTCAAAACAA 554065 35 100.0 38 ................................... CTATGGAACTATAAACAAATTTGCTGATTTTTTAGGTA 553992 35 100.0 41 ................................... CATCTTGAAAAGTTCACTACCAGTACATATAAAACCACTGA 553916 35 100.0 43 ................................... TGGTGCAGCAAACAAACCTACATAAGTATTCAATTTTTGTGCT 553838 35 100.0 35 ................................... TTTAGATTTAGATACCATCTCTGACACAGCATCTC 553768 35 100.0 39 ................................... TCGATATACCTCAATGGGTATGTATTGACATCCTAGGAA 553694 35 100.0 38 ................................... CTGTACCATTGCAAATGTTTTCATCTGCTAATGGTAAA 553621 35 100.0 37 ................................... CTAATACCATGGATTAACGAAGACTCTTAGTAATAAG 553549 35 100.0 37 ................................... TCTGTGGTGAAGTTATAGTAGACGATGTATTATTTAA 553477 35 100.0 35 ................................... AACCAGGCGATAAGGTAGCAGTACCTATCTATCGC 553407 35 100.0 38 ................................... GGACACGACTAATGAACAAATAATTAGTGTACTCTTTC 553334 35 100.0 37 ................................... TTACCAACCTTAAGAACCATGGCTTCATCAAAACTTC 553262 35 100.0 40 ................................... TTTATTCCTTTCGATAAACTCAATAATATGAGTAATGTTA 553187 35 91.4 159 .............................C...GG GTGCGAGACAGCAGAGGCGCAAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACGAAGGTGATAAGGGATTCAGCCTACCGTTTACGGTATTGAAACGCAATCATGCATACCAATACTGCATATTGCAATGTATTAAA CGCG [553155] 552989 35 97.1 37 .............C..................... TTTACTCCTTTCCCGAAGATTTCACGAACTTCTTCGA 552917 35 100.0 38 ................................... TCCATAAGCATTGCATTCTGTGCTTGCATTGCGGCAAG 552844 35 94.3 37 .................T.........G....... AGCCAGATGGGCCGGGATTCTTCGAAAGTATTATATT 552772 35 82.9 0 .............................GCGCCG | ========== ====== ====== ====== =================================== =============================================================================================================================================================== ================== 19 35 98.2 45 GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Left flank : AACATGTGTAGAAAGATTGGTCGTGTAGATTTGTAATTGTGTTATTCGAAGCTTTTAATATAGGAGGAGGTGTTTGTATGGGACTATTTGTTGAGTTTGGTTTAGTTCATGTTTGTGTTGAGGAGTAATTTTGATCATTATAATTGAATCTGATGTTAATTAGACCTATTCATATGATGTCATATGAGTAGGTCTTTTATATATGTAACATTCGGTCACAATCATTTTCTACTGTAATAAATGTATTATAAAATTTGCTGAATATAAGTTTTATCTGTATTTGGCTAAGATGATCAAAAAAGAAAATGATGAGGAATATTGACGCCAAATTCAAAAAACCTTATAATAACTGTAATCTTAGAAAAATCATTTACCACCAGTATTTACCTATGTTCATGAGCATTTTTAATCTAAGGGGAGCACAAACTGACCGTTTTCGGTATGAGGTTTTCCAAAACCTATTTTTAAGCCCCATGAATACTGGCTTTCCAAGAGACACT # Right flank : AAGGATGCGAGACAGCAGAGGAGCAAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACGAAGGTGACAAAGTAACAGTTTTTATCGTTTATGATTGTGTATTTTCATATTTAATGTAAAAGGGTGAATCTTTAGATTCACCCTTTTTTGCGTCTTAGTTTTTTTGAATATGGACTCGTCGATTTTCATTCTATAATTATTTTGTAGCCCAAAGGGAAATACTATGAATTATAAAGATGATAGTTCGCCTTAGTTTTTATGAATTCAATTGTATCTTTGATAAGGTTATACTATGGATAGTTAATTTAGTCATATGAGTTGGGAGGTAATGAATGACTTGTAGAATTGGATATTTGAAATTGTAAATGTCAAAGGATTTGTTTTGTTTATATGTATTTTAGGAGGAATTAATATGCTACCATTATTTGCAGCAGCAGCGGCCGCAGCCGCATGGGAAGGTTTTGCAGCAGGTGTATTATT # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.64, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 5 563514-562597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019721.1 Veillonella parvula strain UTDB1-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 563513 35 100.0 40 ................................... CAACTCGGTCTTAACAGCAGTAGCGATACTGTTGGAATTT 563438 35 100.0 36 ................................... CATCTATATTCGACCATTTTTTCAACTCTCTTTTCC 563367 35 100.0 43 ................................... TGACCACTAAATGCATACTCATCAGTAAGTGCTATATTAGAAA 563289 35 100.0 38 ................................... TATAATTTTATTTCAATTCCTTGTCTTATTGAGCTGAA 563216 35 100.0 36 ................................... TGACATTTGATCAGATAGATAAAATTATTCAAGAAG 563145 35 100.0 37 ................................... ATTTCGACCGCCCCATCGGGACGGCCTTCCCAATCAG 563073 35 100.0 40 ................................... TGTCCAATCAAGCTTGGAGCTATGATTAGAATGTCTACAA 562998 35 100.0 41 ................................... TTATCGGAGTTGAGCCAGCTCCACGCATCAATTAGTTTTTT 562922 35 94.3 37 .......T...A....................... TCCATTAGATCGTTATGGATATACCCTTCTGTTGGGC 562850 35 97.1 35 ...........A....................... TGGCATACGTTAGCACTAGATGCACTTGTTTTATC 562780 35 85.7 38 ...........A.C..T......T..........T CTAGCATATGCAATTACACACATATTTTATTTACCCTC 562707 35 88.6 40 .......T...A.....TA................ TGCATTTCGTTCAAGGGAACTTCTTGCTTCATTAAGTGCG 562632 34 74.3 0 .......T...AT...-TCG.....A.....T... | T,G [562599,562604] ========== ====== ====== ====== =================================== =========================================== ================== 13 35 95.4 38 GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : ACTTGGTATTAAAACGGCACTTGGTATGGGTGGTGTGAAGTGTGAAATTATAGAATAGTTTCCACTAGAAATATATGAATGTTAAAAAGCTAATATTCATATATTATTGGCTTTATCTGAATTTATAGATAGAGTTTTTCGTACAGTTTTACTTGTTTATCTAGGTATAGTAGATAGTATCTTAATTGTCTAAATATGGTATTAAATGAGAAGAATTGACATGGATATTATGGTATGGTCTTAGACTAAGGGTAATAAGGGTAGATGATTGATTATATTTTTCTTTAAACTCAAATGAAAAGAAAATGAACTTAATTGTTGACGTAAAATCTATAAACCCTTATAATAACTGTGATCTTAGAAAAATCATTTACCACTAGTATTTACCTATGCTCATCGACATTTTAGAGCCAATGGGAGTACAATTTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTATTTTTAAGCCCCATGAATACTGGCTTTCTAAGACACGCT # Right flank : TACAGATGGTGAGGTAGAAGTGGCACAGCACAACGATGAAATCTACCATATTGCAGTTATCTATACAGATTGAAGGTAAATAAAGGTGATAAGGGGTTGCACTATATTTTTATATCTAATAGAAAACGAGTGAATTTTTTGATTCACTCGTTTTTTTAGTCTTAGTTTTTTTGAATTTGGTTATATTAGATTTCATCCTATACTAAAGATGTAGCCGATAAGCGGTAATAATTTTAATATGCTTAGGGTATCTTAGTTTTGTATTAAATCATTGGTAGCTTGTTGGGGATTGTAGAAAATATGTATAGTGTTAGGTATAGGAGGTAGTATATGAACGTTAATTGGAATGGATTATCCCAATAATAGTATATTTAGTTGTAATGATAGGAGGGATGTTATGTCACCTTTAGCAGTGGATTCTGCAGTAGCAGTGTTAGTAGCGGTGCTTGATGCACTTGAAGAGTAATTTTATTTATGTATGTTGATCGGTTAAAGTGTGT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 6 564911-566266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019721.1 Veillonella parvula strain UTDB1-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =============================================== ================== 564911 34 76.5 44 AGAA.......G...AA....T............ ATTAGACATGAATTGCTGCATATCATTAATGATGATTTCCATAT G [564913] 564990 34 94.1 47 .......C....A..................... TCTCAATATGTGTTCAATGACGGCAAAACTAGCGGCCAAGAAAAAGG 565072 34 79.4 43 .G........T..C..A..T.T...........T AATCACGTAGTATGAACGCTAATGATTATTGCTGGGTTTTATG 565150 34 94.1 39 .............C.......T............ GAAAAAGTAGAGGGTAAAGAATACAAAAAAATGGTATTC 565224 34 91.2 42 ............A.T......T............ CATTAGCTGTAATTTCAATGATGACAACAGGAGTTGTCTTTG 565301 34 94.1 38 .............C.......T............ TTAAGGAGGACGAGGAATAATGGGCTATATGTTAATTG 565374 34 91.2 42 ............C...A....T............ TAGCACGATTCAAGATGTTTAATGTCATGTTGAATGGTAACG T [565389] 565452 34 91.2 43 A............C.......T............ AATTCATCAATATGATGCGTTCATTTACAACGATGAACACAGT 565530 34 97.1 44 .............T.................... ACAAGTCCAGGTGATTTAAAGATCGGAGACGCTACTCCGTTAAT 565609 34 100.0 43 .................................. GTTAGACCGACTAAATCGCTGATGCGGAGACCAGAGTTAATTC 565687 34 100.0 43 .................................. ATACATCAAATTTCTTTTATTGGTGTCAAGTTCGCCATAAAAA 565765 34 100.0 42 .................................. TGTTTCTTCAATTTGTTTATTCATATTAACTACCTTTCTATT 565842 34 100.0 44 .................................. TATATGGAATATACATATAGAACAATTCAAGATTATTTCTACAA 565921 34 100.0 43 .................................. ACGTTTACATAGATTTCTTTATCTGAATAGATTCTAGAAACTA 565999 34 100.0 41 .................................. GTACTTCTAACAATAGCTTCTTGATATTCATTATCTACCAT 566075 34 100.0 44 .................................. TTCAAATATTGTATTCCATAATATCAAATCAGAAATAGATGTAA 566154 34 100.0 44 .................................. GATAAAACGTGCGTATAAATCATTAGTTTTATTAAAGGAAGAAA 566233 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =============================================== ================== 18 34 94.9 43 GTTTCCGTCCCCTAAGGGGATCATTTAATTTAAC # Left flank : CTTTAATATATAAATAACCTCGCTTTTGCTTTAAAAAGATTTTCTCAGGCATTTCTAACGTAGGTCTTACTATACGATTAACTGCATCAGCTGTTACAGCTGAAAGACGCCATATATATTGTTTTTTATGTTTATCAAAGTAAATATATTGGCTATAAGGACGTAAACCAGTCTCATGTAATTGGCCTGCATACTCTGTTCCCACAAGCTCCATTAGTACACCATGTAAAACACTACCTATAGACTGTACAATTTTGATAGATAGATCTGCAACTATAACCAACTCTATAGACATAATCTCTACATTATCAGACAATAAAATCCCTCCTTTCTATGTTACGCATATCTGAATATATAACACTCACAGTCTATCGATTTCATTATATATTCATTTCTGATTAAAACCAATAGAAAACTATCTAATTTATACAAAAAGCCAGTATATCCACTAAAAAGAATATACTGGCTATATTTTTGTACCTATATGAGTTTTTGACATA # Right flank : ACCCTGTCTTTGAAACAACAGATATTTACTGGTTCTAAAATGCCAAAAACGGCGGAGATTGTAAATCTTCTCTAAAAAGCACTTTAGTAAACTAAAATAATGCCGTTTAACCGCGCCACTATCACAACGGCGCAGATTTAGTTTTTCAGAGATTAAATCTAGGTCTATTATAGCACATCACTAACATTAATGAAAAACATATGAAAATAGAGCCACCTTATATAAGGTAGCTCTATTGAGGTGCCATATGTAACTTATTTTCAATAATTCATCTGCTCCCGCAGTTTCGTTTATTTTCTTATACGCCTATCCTCCTTTCCCAGATTTCTCTCCACCCTCCTATTTGTACTTTCACCGTCCAACGAGTTATCTCGTTAGGTCTCTCCAGGCGATAAATAGTTCGGCCACGACTTGAGGGTTTTGGCTGAGTTTGATGCGGGCTAGCATTTTTCGCACGTAGTTGCAGTGTTCTAGCATCGCTTCGTTCAATTTGTGTTTGA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTAAGGGGATCATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //