Array 1 422566-424179 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKKJ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain F32H1 NODE_1_length_682588_cov_21.929041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 422566 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 422627 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422688 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422749 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 422810 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 422871 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422932 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422993 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 423054 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 423115 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 423176 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423237 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423298 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423359 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423420 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423481 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423542 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423603 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423664 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423725 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423786 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423847 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423908 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423969 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 424030 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424091 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424152 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440312-440951 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKKJ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain F32H1 NODE_1_length_682588_cov_21.929041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440312 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440373 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 440434 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 440495 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 440556 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 440617 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 440678 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 440739 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 440800 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 440861 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 440922 29 96.6 0 A............................ | A [440948] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //