Array 1 1763-2158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGU01000128.1 Leptospira alexanderi strain 56643 Contig128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1763 29 100.0 32 ............................. AGATTCTTCTTTTTTCAGGCTCTTCTAAAAAC 1824 29 100.0 32 ............................. GATTCTCGGATGAAACCGGTTCAGAACCGGCT 1885 29 100.0 32 ............................. AAATTCCGCGCGTTTTAACTCCGGTCCAAAAT 1946 29 100.0 32 ............................. AAATCGAACCTGTCTCGTGGATCTTGCGAGAT 2007 29 100.0 32 ............................. CTGACTCCCAGAACAATTACGAAAGCGCTGAT 2068 29 96.6 33 ............................A GGTGGATCACCTTCTTTTCCGCCCGTTCCTGGC 2130 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.5 32 CTATTCTCCACATGCGTGGGGTTGAACCG # Left flank : TAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGGGTGAAGACCTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTTTTTGTCGCTTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAGGGTTACGGTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCGAAACGCGATCAGAAAGAAGTTATGAGTATTTCCGATTTTTCTATGGTCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAGACTCCCTTCTTTTAGAAGCAGATGATCCCTAATGAATCGAATGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : GAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTAATTCCTATCCCCTAACATCTTGAAACACACACGTGGATTAATAACTTTAACGATTGTGCAAGTAACTTCCCCGCAAAATCCGCTAAAAGATTATCAGCTGGAAAAAATCATAACGAAACGTATCGCAAAAGAACAAACCCATAAGACATACAAGAAATCTGAATCCGATTATAAAAATCATTTCCTTTCAGATTTCTTGAATCCTTTTAAACTTTGATATAAATTTTCCTTTTATCTAAGAAACTTAAGATTCCCCACCAAACCGACAAATGAAGAACCGCGTATAACAACGATGCGAGATACGGGTCTGCAATGAAAACAAGTTTAGAAAAAAACCAGGCTTTGACACCGACCGATTTTCCATTCTCTAACATGATTGTCCAAAGGTTGAGCGTTCTCGCAAGTATTCCGGAACCTACAAAAACTAAAATCGCGTTCTTACCGAATACGAGTAACGGTTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCTCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 783-84 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGU01000151.1 Leptospira alexanderi strain 56643 Contig151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 782 29 100.0 32 ............................. AACGAAATCGAACGATTGAACTCGACGCACAA 721 29 100.0 32 ............................. CTGATTTTTGAGCCTTCTGAGACATTTTTTCA 660 29 100.0 32 ............................. CGAAAATCCCCTTCTCCGGATGATAAAATTAA 599 29 100.0 32 ............................. CGATGTCAACGCTGGCGGGCGCGTGAGCGCAT 538 29 100.0 32 ............................. TTGTTCTGTCGTAAGCGAAAGAAAATTTAGAG 477 29 100.0 32 ............................. GAGGTGAATTGGTGTTCCTGTAGTTCCGGAAA 416 29 100.0 32 ............................. AATGCAAGAAGAAGCAGATAGGATCTTGAGAA 355 29 100.0 32 ............................. TAAAGGGGAATTTCCACACAATTGTGTGGATA 294 29 100.0 32 ............................. TAATCGAGCCGATGGGAACACCTCCGCAACGC 233 29 100.0 31 ............................. GAAAACTGCATGTATGGAAAAAACCCGAAAC 173 29 100.0 32 ............................. CCTGCACTTGCTGATAAGTATTCGGATACGAG 112 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCGTATGAAAACGGCGCATTTTATTCTATGTGCGACTTTCATTTCTGCTCAATGAACCTGACTCAGAAATTGCGATCGTCACACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATCGTTGTTTTTTTACAACATTCAATTCATATAATTCCGATATACATAATATTATGATAAACAATTTCTCTCTTTCTAAACAAGTTTGTTCCCAACTCTTTCAAAATGATCGGCTCTCTTTCTTTGGATCCGAAATTCGTTTTCATGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTTATGCCCAAGCTAAGTCCAAATCGAAATCAGAAAGAACCTTAAATGATTCCGGTCTTTCAAGGTTTCTTGAAGAGGACAGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAACACAAGATCAGATCATACCTTTAAAAATAAACTCTAAGCTGACATAATATGTAAAATACTATACGAACTTTTAGA # Right flank : GAAAACAGGATAGATTTTGACTTAAAACCCTAACCACTAATTCCTAATAACTAACATCTTGAAACCCACACGTGGGGTTGAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1484-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGU01000025.1 Leptospira alexanderi strain 56643 Contig025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 1483 29 100.0 32 ............................. AAACATACTTCAACAAAAAAATCGAAACCATT 1422 29 100.0 32 ............................. TTAAGAGATTGATCGCTGTTAAGTTAAGAAGG 1361 29 96.6 32 ............................A TTTCCGGGATTCCATCGGAACCGACGTCCTTC 1300 29 100.0 32 ............................. CAGTAAACTGATTCATATAAGTTTCTGCCCCG 1239 29 100.0 31 ............................. TAGGAACCATTCCAGGCCTATCGTGTTCGAG 1179 29 100.0 32 ............................. AATAAGTTTTTGCATTGACAAACTTATCCACT 1118 29 100.0 32 ............................. AATAAGTTTTTGCATTGACAAACTTATCCACT 1057 29 100.0 32 ............................. ATGAAATACCAGAGGATAGCAATCGGATAACA 996 29 100.0 32 ............................. CGAGATATGCTATTTGTAGTTCGAAACCTTAT 935 29 96.6 33 ............................A GACGAGAGAACTTGGAGCGGCCGCCGGTTGTCA 873 29 100.0 32 ............................. CATTAATGGAAAGGCTACTATCTGCTTTCGAA 812 29 100.0 32 ............................. AGTTGTGGATTGATTTAGTTTAAGCCCTATTT 751 29 100.0 32 ............................. AAGAAGGCGACTCCCAAAAAGGTCGCCCGAAA 690 29 100.0 32 ............................. TACGTCGCCCAAACGTTCTCGTTCCCGCCACG 629 29 100.0 32 ............................. AAATCGACGCGGACAACATCGTTCGTTTTGTT 568 29 100.0 32 ............................. TGACGGTTGCAGAATTTCTAATGCGTTCGATA 507 29 100.0 31 ............................. CAATATGAACATTTATCAAATTTCATTAAAA 447 29 100.0 32 ............................. GGACTGCCACGGCTACCTGGGTTCACGTTTCC 386 29 100.0 32 ............................. CTCCCAGAATGCCGGTGGTTCGAGGGTTCAAA 325 29 100.0 32 ............................. AAGGCGGTAAGTCTTGGCATTCGACGGAATTT 264 29 100.0 32 ............................. ATCAAAGACCAATGAAATCAAAATCCGGATCG 203 29 100.0 32 ............................. CACATCCAACCCGAAGACTTGAGCATTCTTCA 142 29 93.1 56 ..........................TG. AAAACAGAATGGATTTTGACTTAAAACCCTAACCACTAATTCCTAATAACTAACAT 57 28 75.9 0 ...GAAA..-................TG. | ========== ====== ====== ====== ============================= ======================================================== ================== 24 29 98.4 33 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCTCGTTTGCTCCAATCTATTTATGACCTTCGCTTGGTATGGTCATTTGAAGTTTTTTCACGGATGGAATCTTCCTTTAACAATTTTACTCAGCTGGGGAATCGCACTTTTCGAATATGTCTTGATGGTTCCCGCCAATCGAATCGGCTACGGAGAGGAAGGTTACAGCGCCTTTCAACTTAAAATCCTACAAGAGATCATCACTATCTCCATTTTCATCTTATTTGCTTCCTTGATTTTAAAGGAAAAGATCAGATGGAATCATGTGGTGAGTTTCTTTTTAATTTTAGCGGCGGTTGGGTTTGCGTTCTACGATAAAACTCCCGCAGAAATATAATTCAGCGATTCACTAATTGGTTTTCTTTCAAAGTATGTCAAATTGAAAAAGGCTTGATCTCGGAATTCAGTCCGCCGATATCATCGGCAAGTTCTGCAAAATACAACCAATTGGGCAATTTTATCTTGTCGAAATTACAGAAACTACTAAACTGATCTTTAGC # Right flank : GAAAACAGGATAGATTTTGACTTAAAACCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //