Array 1 233665-232008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABKAY010000092.1 Vibrio parahaemolyticus strain CAVP11 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 233664 28 100.0 32 ............................ GTCATCAAAATTTATCGATAAATTAAAAGAGT 233604 28 100.0 32 ............................ TTAGCCTTAGCTTTAGCCTCTTGCTTGGCCTT 233544 28 100.0 33 ............................ GATGAGGAAATGGCTGAGTTAGCTCGAAACCTT 233483 28 100.0 32 ............................ GTCACAAGGGTGATTTCCACTCCTTGCTGATC 233423 28 100.0 33 ............................ ATCCGTCTAACGCTTCATCAAATGGGTGGTATT 233362 28 100.0 32 ............................ TTTTTTATTGGATTGAAGTTATGACATACCCA 233302 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 233242 28 100.0 32 ............................ GTCAAAACGCGATTGTGATGCAAAACCTCGAC 233182 28 100.0 33 ............................ TATGACAGCTCAATGAGTCTAGCTAAGAAGTTT 233121 28 100.0 32 ............................ CGTCAAGGCTGGTACTCAAACAGAAGCGAAAG 233061 28 100.0 33 ............................ ATACCGCAATATTCACATAAACGAAAGAAATCT 233000 28 100.0 32 ............................ TGGCAGCCTGATAAGAATTGGGCTTCTGGTGT 232940 28 100.0 33 ............................ CAAAGAAAACCGAACTAAAGCTAGCTGCTTCGC 232879 28 100.0 32 ............................ TCGGCGTTGACGCCTGCATTGCAGAAGTTGTT 232819 28 100.0 32 ............................ AACTAGCGCGCTACGCTTACTCAAATCAAAAA 232759 28 100.0 33 ............................ TGAGTTTCTGTTAATGAGCAAGAAACCTCCCTT 232698 28 100.0 33 ............................ AATAGATCGTCGCCGCTGAATTGTGCTAGGTCT 232637 28 100.0 32 ............................ AATAAACCCTGCCAGTGAGTCTGAGAGAGGCT 232577 28 100.0 32 ............................ TTTGCCTTGTGGCAAGTGCATTGGTTGTAAAA 232517 28 100.0 32 ............................ TTTGCGCTTCTTCTATGTACCAACTAGGTTTT 232457 28 100.0 32 ............................ TTAGACAGATTGTAAACCTTGTAGAAGTCATC 232397 28 100.0 32 ............................ TGCTGCCAACAGACTGGCTCGTCGTAACCTTG 232337 28 100.0 32 ............................ TACGTAATATATATTGAAAAATGCGGTAAAGC 232277 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 232217 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 232155 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 232095 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 232035 28 89.3 0 ..........A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : GGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAACCCATGATTATTCATATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCATGCAGATATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //