Array 1 119383-118394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYG01000019.1 Dickeya undicola strain 2B12 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 119382 28 100.0 32 ............................ TCTTCCGCGATGAAACCATGCGCACAGCCTGC 119322 28 100.0 32 ............................ TACATGGCGCAGGTGCAGTACAGCATGTGGGT 119262 28 100.0 32 ............................ GCGTTAAATCCACAGTACGGTTTGCTGTCCGT 119202 28 100.0 32 ............................ TACGGCGATTTCGCCCGCCGCCAGCTTTCTGC 119142 28 100.0 32 ............................ TGCGCATGATCGCATACATCGCAGGTGTAACC 119082 28 100.0 32 ............................ AAAAACGACCTGCAAAAAGTTTCGGTCCGTTG 119022 28 100.0 32 ............................ AAATGAAAACGATTCCAGCGACGATACAGACT 118962 28 100.0 32 ............................ GTGCAGGTGTATATGAATTTCCCCATTGAACC 118902 28 100.0 32 ............................ TTCAAACGCGGATTGCGCGCGCGAGCGCAGAT 118842 28 100.0 32 ............................ ATCAACACCTGACCTGACTGGCGTGAAAACAG 118782 28 100.0 32 ............................ TGTCCTGCAAAAATACTCGACAGCGACAGGGA 118722 28 100.0 32 ............................ TTGTCCGCGCCTGGCTCGCCGCCGTCTTCGCG 118662 28 96.4 32 .................T.......... TGCAAATAACCCGGATGTGCGTGGCACGACGC 118602 28 100.0 32 ............................ GTTGCTGCGCGTCAGCGTATGGCGCACTGCAT 118542 28 96.4 32 ........................A... GCCGCGTCTGCGTCTTGCGTCCATCGAGAATG 118482 28 100.0 32 ............................ ATAGTGTCCTCTTGGGTTAATGATGTGGCAGC 118422 27 85.7 0 ....................A..-..CG | GG [118399] ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.7 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACACTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTCCCTTCTTCGGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGCTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAATTAACGAGAATCAGCCTAGCACAACCCAAACGGTAAAATGAATGACACCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTTCAGCCACCTTTTTCAGCATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGCAGGCTGAAATACAACGGGTTAGAGTCAATAAGTTACG # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCGCGGCAGGGACGCCGCGCAAGCCTGTGCCGTGTTGGGAACACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACGCGGTTTATCCCGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTGCCGACGGTGGTGGCGGCACGTTTTTCAGTCGCAACCGGGCGAGCGGAAGCGGCAGACGGCAGCGCGTGAGATAGCACCGCCGACCGGCGGACCGGCGACGGCGCGCCGCTGTTGCCCTGCGGCGTCAGGCGGAATGCGCTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 128740-129847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYG01000019.1 Dickeya undicola strain 2B12 contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 128740 28 100.0 32 ............................ AAGACAAATCCACTTTACTTATTGGAGTGTCC 128800 28 100.0 32 ............................ ATGCCATCACACGAATCCTGCTCTATCACTAA 128860 28 100.0 32 ............................ GCCCGTTACACGGACCTTTTTAACCGGTATAC 128920 28 100.0 32 ............................ TCCAGTTTGACACATAGAAAACGTCAGACCAC 128980 28 100.0 32 ............................ ATCGGCACGGTGGCAAACCGCCTGCCCTTCTA 129040 28 100.0 32 ............................ ACCTCCAGCACATACAAGTGCAGATGAATCTG 129100 28 100.0 32 ............................ AAAAGAGAAAATCGTGAGGTTTGCTTGTGATT 129160 28 96.4 32 ...........T................ GGGCGTTACCCGGTGCCGTGGAATGACACACC 129220 28 100.0 32 ............................ ATCTTTGGTCATTAATTACATCAATTCCATCT 129280 28 100.0 32 ............................ GATGGTTAATCGGTCCACGTAAATTCGTGTGT 129340 28 100.0 32 ............................ ATTCACGACAGTGCAGGCATTTACGGCGCGAT 129400 28 100.0 32 ............................ GCTATATTTGAGTGTCTGACATTGCTAGAGCA 129460 28 100.0 32 ............................ TTTTTTGATGTAATCTCGTTCAACTTCTAGAC 129520 28 100.0 32 ............................ ATCGTTGCGCAGTCGTGTGCGCTAACGTAAGC 129580 28 100.0 32 ............................ AACACCAGCGAAACGCTGCGCACCGGCAAGCT 129640 28 100.0 32 ............................ CGGACAATCAACGCCGCTACGGTGCTACGCCC 129700 28 100.0 32 ............................ ACCATTTCAGCCATTCGAGTCAGGAACGAGAT 129760 28 100.0 31 ............................ TTACGCGGAGAGCTGGTCGTAGCACCGCCGG 129819 27 78.6 0 ...........T.C......G..-..CG | AG [129837] ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGGCGGCGCTGGAGCAAACCGGCTGGCTGAAAGGGCTGCGCGATTATACCGCCATCACCGAACCGCTACCGGTGCCCGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCCGAACGGTTGCGCCGTCGCGCGGTGAGTAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGTCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGACCAACCGGTCGCCGGAGTGTTCTCCAGCTACGGGTTAAGCGCCGCCACCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTAAATACCGTAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATGGCGGTTTTTCTTTAACAATCAGGTGATAAGCGATAATTCGCTACA # Right flank : GGGTTTACTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGTGACACGGTTTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAGCACCCCGGCTGTGTGTCAACAGCCCATCCCCGGCGGGCATAGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGGTGGTTCAGGCCCGCGATGCATACGCGGCCGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //