Array 1 95590-94229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKX01000014.1 Parageobacillus thermoglucosidasius strain DSM 2542 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 95589 30 100.0 35 .............................. CTTCATCCAGCGTCAAGTCGTTCATTTCACTTGTC 95524 30 100.0 36 .............................. TTGGGTGGCGCTGTCGCGCACTCCCTTGACCCTCAA 95458 30 100.0 37 .............................. TTTCACATTCCGGCGCTTTTGTTTCAAGAACAGCCTC 95391 30 100.0 38 .............................. TCGACGGCCCCTGAATTAGATCAGCTTGGTGGTATCTC 95323 30 100.0 37 .............................. CTTCAAATGGGATGACTCTAACTATATCAGGATTTCA 95256 30 100.0 35 .............................. ATTGAAATGATATGCGACTGGAAAGCTGCGGTGAT 95191 30 100.0 36 .............................. CGCTTTCAAACGCCATTAAATCGTCACCTCCTCGGT 95125 30 100.0 37 .............................. TCTGGAACACAAATGAAAGGAGTAATAACTGGATGAA 95058 30 100.0 38 .............................. TCCGTCGAAGAAATGATTTCTTTGCTATTCCGGCTCTC 94990 30 100.0 35 .............................. AGAATATCCATTGAGTAATTGCACTCGACCATGAT 94925 30 100.0 37 .............................. CACTATTTTTTGTTATTTCGAGTTGAGCAGCTGTTGT 94858 30 100.0 36 .............................. ATGAAAGCACCTTCTTTAGAACGCGACGCTCTCATC 94792 30 100.0 37 .............................. GAAGTAATTAGTCAAGCAATTAGGTGGCAAGGCATGT 94725 30 100.0 37 .............................. TCACGTTTCGAGATATGAGAAAAGAACACGGTCATTT 94658 30 100.0 35 .............................. TGAAGCACCTTGGCGTGAAGAGAAAGTTAAAAAAG 94593 30 100.0 36 .............................. TGACTTCTGCCAAAATCGCTCTATCCTCATTGGCTT 94527 30 100.0 37 .............................. CAGGCGCAGCGAACGCCTTATAGGCACAGCGAACGCC 94460 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 94394 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 94328 29 90.0 40 .....C................-..A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 94259 30 76.7 0 ......GC...CG....G.AA......... | T [94244] ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.4 37 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AGTAAAAACGGCCTGCCGAGCTTGACAGTGGTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACATAATGCCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTCCCTTTTGCTGCTTTTCCCAACTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATACTAAACATAGCTGCTTTCGAAAAAGCTGATATACCAACGCTTTTTGGG # Right flank : ACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 103252-103090 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKX01000014.1 Parageobacillus thermoglucosidasius strain DSM 2542 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 103251 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 103185 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 103119 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGAGT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6103-8540 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKX01000030.1 Parageobacillus thermoglucosidasius strain DSM 2542 Scaffold28_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6103 30 100.0 39 .............................. CTCAACGATGAAGAATCCATACTATAATATCTGCAGATA 6172 30 100.0 36 .............................. TTGTGTGAAGTTCTTTTTCTTCCCCTGTTGTTGAAT 6238 30 100.0 35 .............................. TCGTACCATTCGACTTTGGTGTATTCGTTGTTGTC 6303 30 100.0 35 .............................. ATGCGAGAAACAAATCACTTTCTCCAAACAAAAAA 6368 30 100.0 35 .............................. TCTTTCCACGCTAATGATAAAAACCAAGCCATGAT 6433 30 100.0 36 .............................. ATGGCCTTCACTGCGGAACGCGGCAATTCGAACCGT 6499 30 100.0 37 .............................. AATGAAAGAAAACAAAGAAAAAGTCATTGACGTTTCT 6566 30 100.0 35 .............................. GAGTCTTTAGTTAGGACGTTTTCTGATTCGGAAAC 6631 30 100.0 38 .............................. CGCTACATATCTATCGAAAGGAGGGACGAGTATGGCAC 6699 30 100.0 38 .............................. TGGAAAAGGAAGTCGGGCATTGGAAAGAGCTTTTCGAA 6767 30 100.0 36 .............................. TTGGATATCCATACTTTTCTATCATGGCATGCTTCG 6833 30 100.0 36 .............................. AGAACACCAGCAATAAATGATTCCCCCGGCGAACAA 6899 30 100.0 38 .............................. AAGCTGGCAGCGTTCGGCAGGCGCTCCGCCTGTCGAGG 6967 30 100.0 37 .............................. CGTCGAATTCGAATTTTTCGCCGTAAAAGTCTGTGCC 7034 30 100.0 36 .............................. AAAGGTGGCCAAGGTGTTTTGAAGCGCGGCACCGTG 7100 30 100.0 37 .............................. ACAAAGAGCTTGAAAAAATTCCGGTCCGCATCGACGA 7167 30 100.0 37 .............................. TTTTCTTCTCGGAGCCTTTTCTTTGCGAGCCGTATTG 7234 30 100.0 37 .............................. CACGATGAAACCACTAGGAATTGTCCGCAAAATCGAC 7301 30 100.0 35 .............................. ATCGGTCTAACCGATAAACTAGTACAATATCGATA 7366 30 96.7 37 .T............................ GAACTGTATGCTATATCTTTTTCAATATGGCTGAACA 7433 30 96.7 38 .T............................ AATGCCCCGACTTGCACGCGATAAACCTTCCCTTGTGT 7501 30 96.7 35 .T............................ TGTAGGGAAAGCCAGTGGATGGATCGCGTCTATTT 7566 30 96.7 38 .T............................ AACAAGTAAATATGAATGAACACCAAGCTGCAGCTCTT 7634 30 96.7 37 .T............................ TAGCCTCTCTAAGTTGTTTCCAATAATCAAATGATGG 7701 30 96.7 39 .T............................ AAAGTATGTAGCCGTTTTTCTCTGCAATGCGATCCCATG 7770 30 96.7 37 .T............................ TTGATAAGGCGGTGACATTCTAATGGCGCTCACACCC 7837 30 96.7 39 .T............................ ACGATAGAATCATGCTTCTATCTAATGAAATGATATTTT 7906 30 100.0 36 .............................. ACATTTGCAAGGTGGGAAAATGAAGAAAAGTATAAG 7972 30 100.0 37 .............................. GAGCCGAGTCGCCGCGTTAGTTTGGGGTTGAGCTAAT 8039 30 100.0 37 .............................. GGCATCTCCCTCGAGGAACTAGCCGCCGCAACTGAAG 8106 30 100.0 39 .............................. TGGAAGAAAAAGATTTCGAAAATAAAAATAAATAAGGGC 8175 30 100.0 37 .............................. AATGGCTAGCGGTCGGGAAGCGTGCCGGCCTTTCTTT 8242 30 100.0 36 .............................. CTCACACCCTACCAACACCTTATCCACAAACTTATC 8308 30 96.7 38 C............................. ATATATCGAACCTTCACCAACATAGCTCGCTGCGTTGT 8376 30 96.7 37 A............................. TCGGCTTGCCATCATCAGCGCGTAGGTCGCCATCCCA 8443 30 93.3 38 C...G......................... GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTTGGA 8511 30 86.7 0 .T..................A....A..G. | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 98.6 37 GGTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : GGTGCCGTGTTGATCGAAATCGATGAAAAATGGATGTCAGGGCGCAAATACTTGGATATGGCTGAATATTGGAAGTGGCGGAAAACGAAAGAGCAAGGAGTCCGATCGGTGAATCAGGAGGCTCCGGCGATCAAGAGAGTGGGATAACCTCTACGCCGTGTCAAGGAGAACGTGGAATACCGGAGCGAAGTGAGGATATGCCGCGAAAGCTCCTTGACACGCCTGTTCCTTGACAACATGATCATTTGTCCGGGAAGGCGACCGGCAGGGAGACTTTCCGGTCTTACCTACCATACGTCAAGTCATCAGGTCCATGTTGTCTATCAAAGGGGAATTTACACAATAATTTGGACTTGACCCTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCGACAGACATCAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACTGACAATCTATATCCAAAAGAGCTAACACTTAATGATCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTATACTTGGAGGGGATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAAAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAAATTTAATGGATTATAAAAAAGCGCTAGAACGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATCGACGAAGAATATTGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATATTTCCAAATACAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGCCCTGTCAACATTCAATTAAATGTTGATGGGGAGAAGCTAGTTTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 17991-20287 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKX01000030.1 Parageobacillus thermoglucosidasius strain DSM 2542 Scaffold28_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 17991 30 100.0 37 .............................. TCAAAGGATACAAATTGAGATGCTTGTTGCAGTACCG 18058 30 100.0 38 .............................. CACTCACAATGAGCACCCTAAAAATTCAAGTATTCGTG 18126 30 100.0 38 .............................. TATATAGATCAAACAACAACTCTCTTGGGAGTTCGTTT 18194 30 100.0 37 .............................. TGGCATTTGTGAAGCAGCGATACCTTTTGCCATCCAG 18261 30 100.0 37 .............................. GGCGTTCACCCCTTCGATTTTGATTCCGAGGAGGTCA 18328 30 100.0 37 .............................. AAGGCGTAAGAAAAGAACACTGATCATTAAAATTATT 18395 30 100.0 35 .............................. TGATTCTTATACCACTTTGAAAAAGCGACAGAATC 18460 30 100.0 38 .............................. ACACCAGGCATCTTGAAGACCGTGACACTCTTCGTCCC 18528 30 100.0 35 .............................. ATGACGCAAACCAACGCCACTAATTGCGTCCTCGC 18593 30 100.0 35 .............................. TTTTCGTTTTGTTTCCGCAGCGAATGAACGTTTAT 18658 30 100.0 36 .............................. AACGCCGTGTCGTTGCTAGCAACCGACGGCAAAACC 18724 30 100.0 37 .............................. CAGTTTTGGTTGATATCATCGATGGGGTCGAAAGTGT 18791 30 100.0 36 .............................. TCGGTTATGCCGCTGGATTCATGGTATTGAAATCCA 18857 30 100.0 39 .............................. TAAAATTACACATGACTTGGCGAAGAAAATCGCGCAGGT 18926 30 100.0 37 .............................. TCAAACGGTCGATGATACCGAGCCGGAACCCTAACAT 18993 30 100.0 35 .............................. GGCGAATAAAATCTGACGAAAATTCGTTCGAGGGG 19058 30 100.0 38 .............................. TAATAAATATAATTCGTAGTCACACTAGTAACCTCAAA 19126 30 100.0 38 .............................. CACTACTGCATGCACGAACTCCGCTATTCACCATCACA 19194 30 100.0 37 .............................. CCAAAATCACTGGACAGTATTGGGTAGGCATACCGAG 19261 30 100.0 36 .............................. CAAGTCATGTGATATGACGTAAATGAACCGTCTGTT 19327 30 100.0 37 .............................. GGGAAGTTGCCACTAAAGATGTATCAAAAGACGGAAC 19394 30 100.0 37 .............................. ATTTCGGTCGAACGAGTGCATCCTCCAAGAATCACAC 19461 30 100.0 38 .............................. TGTTTATTTAAGAAAGATGAAAGGATTGGCATGTATCC 19529 30 100.0 38 .............................. TTTTATAAACAAGCTTTTGGTACGGATTTAGTTGGCGA 19597 30 100.0 37 .............................. AAGCCACGCTGGGCAAACGATGTGCCAAGCCGCAGAG 19664 30 100.0 37 .............................. ATACAATGTTAAAAGATTTATATGCATTAGGCATGAC 19731 30 100.0 36 .............................. TCTATTCTTCCGTGATAAAACAAGTAAACTATCTGA 19797 30 100.0 35 .............................. TTTTGATAGTCTGTTTTCACTTTTTCTAATTCCTC 19862 30 100.0 35 .............................. AAACGCAGATGGAGGCTTTATCGAAAGGCGTCAAC 19927 30 100.0 36 .............................. CAAGAAAATTTGAAGATTGGAAAAAAGGATACTTGC 19993 30 100.0 37 .............................. AGTCGTTCATGGTGTCATACGGAATGACAATATCATG 20060 30 100.0 35 .............................. AGATCAACCCTCGCGATAGTGATGCGGTCAATCTG 20125 30 100.0 36 .............................. ACGGAATGGAGGACGCAAAATCATGACGCAAACAAC 20191 30 100.0 37 .............................. ATGGCGGCAACGCACATTTGCAAGTAACAGAACTGTC 20258 30 93.3 0 .................G.A.......... | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 99.8 37 GTTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : ACAGCATTCTCTTGACATTGAAGCAGAAGAGATCCCATCTATTCAAACACTAGAAGACATTACACAATATCTTATAAAAATTAATGATTAAAATAAAAAATTTTAAATATAGAAAGAAGAATTCAAACGCCAACAGACAAAGAATAGCTAATCTTAAGTCAACTCGCGCGGCGACAGCTTATTGCCAGCATTCAGCCGCTTGTTATTTTAAAGACAGGCTTTAAGGGTATATAGGGACTGTGGTTGGTCTTTCCTTTTTCTTAATGAATACTTAGCGGTTAATCGAATCAACAATAGATGTTTGAATTCGTTGAATAGCAACGTATATTTTTGTCGTCGATCCCTAATAGCGCACAACCCCCAGGGGATCGACGACATGTTTATTTTCCTGCTTTTTTCTACAAATATCAGTATTTTTCCCATATTGACGCAATTTTCAAACTGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACAGAAACTGGAACTGACTATTCAAGATGTGTGCTCTTCCGACACTCTGTGTTTGCCGCTTAACTATGAGAAATAAGTCCTGTACAAAAAGCACATCAAAGGTTGCATGTACGCAACTACCATGATATTCAACCATGACAATTGCTTTTATTAGCGCATTACGGAACCGTTAGTGCGAAAGCCCCGAAATTGTGGGCTTTTTTAGTTTCGTTGTTAATTTTTGTTGATATATGCCGAGAAATTAGTTAAAATTTGGATAGGAAATTAGAAGTAGGAGAAAGGTGGTGGACCGCGGAAAATCGCGTTTCCGTTGTTGATAGTTTCCTAGAGTTTCTTCATCAGCAGCGGTGATGATATAATTGCGGAACGAAAATGTATCAGCATATCGTCATTACATGCGGAATTTCTTTGTTGACTGGAAAAGCGAACGTTTTTTCGATAAACCGTGATGAAACGATGGCGGAAATACGATCGTTACTAGATGTAAAAGAAATCAACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 29524-29883 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKX01000030.1 Parageobacillus thermoglucosidasius strain DSM 2542 Scaffold28_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 29524 30 100.0 37 .............................. TCATCTTACTAGAGACAAAGAAGCTTTCCACGTCGGA 29591 30 100.0 35 .............................. TATCAACCTCCATTTGATTTTTGAAGGCGATTCCT 29656 30 100.0 35 .............................. ATGATTTGGCCATCTGTTTGGAATCCTTTGGCCAA 29721 30 100.0 36 .............................. CTCGGCTGGGAAATCGACGCGAACGGGATGCTTGTT 29787 30 100.0 37 .............................. TTAATTCTCTGATATATGCCTTCTCCTTTTCATCTAA 29854 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAAAAAGAAAAAGAGCGGGAAGCAAAAAAGCTTTTAGAGGAACGTGAGAAAGAACAAGAACGCCAAAGATAAGAGGAAGAAGCGCGTCTGGCACAGCTTCCTCCAGAAGAACGGCTAGTGCGGCAAATCGAAATGCTTACCAATAGCCAGCAAGATCAAGAAAAAAGTAAATCTGTGCTGTATCAAGAGGTCATCGCGCAACAAAACAAACAGGCCGCACAAGCACTTAAAGCCTATTGGCAACGCATCGGACAATGGAACGTAAAACCAAGTAAGCAAAAACAATACGAAAAAGTACAAGCGATTCGGGCGTTGTTAGAAAGCTAACCCGTGTCGTCGACCTCCAATCGTGCAAAAATTGTGGAGGATCGACGACACTTCTTTTTCTCCTTCTTCCTTACAACCATCAATCATTACTATATATTGATCAAATTTTCTAAATGACGTATACTGATTTTAGCCATTTCAGAAAAACATTGATACATCAGCGTTTTTTAGGG # Right flank : CTATCCAAGCATAGTGTTAGTCGAATAGTAACGTTAAATTTAAAGCTTGAGGACAGATGTTCCCCAAGCTTTTTTGTGCGATTATGATGTGTTTCATTATGTTAATCAGTGTCTCCCATAATATAGGGTTATGATTTTATAGTGTTCTTGTTGTTTCTTGTTGTTGGATTATCCCAGATATCAACGTCAATTCGTGCTTCTATAGTTTGCTGCAGTGTTTCCCCCCTTTGAGCCTGCCAAGACACCGTGTCCTCTTTTCTTTTGGCATAACTGCGAATTTCATCGATTGTCGCGGGTTCATTAACTTCATCTTAATCGCTAATTTTTAATTAGTTATACTAGTGTAGTGTAAAGATCTAATCAAGACTTTTTTAGGTGTATTTTAGAGAAATTATTTGTAAAATAAAGATGAACGTCTCTTCCTAGCCATGCTTTTATTGCAGCCTTACAGACAACTGCTCAGGAGAAGATGGAAGAAGCGTTCTAACATTGGATAAAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 108849-106944 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKX01000003.1 Parageobacillus thermoglucosidasius strain DSM 2542 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 108848 30 100.0 37 .............................. TGCTGATAATGCGTTAATTATTGACACGAAAAAATCT 108781 30 100.0 36 .............................. ATCGCGGCCGTAGATGATGTGTACGGAACGTTTCAC 108715 30 100.0 37 .............................. GCAACGATGAACTCTAATGTATCGTCGTTGCTGTCTC 108648 30 100.0 38 .............................. CATTTTCCGCTTGGTGAAGCACTAGAAGAGATGCGCAC 108580 30 100.0 37 .............................. ACTTGGTTGAAAAACCTACTGATGAAAAGATACGAAA 108513 30 100.0 37 .............................. TGTTTTCTTGAGGTTTTTCTAATGTTAACTGTAAAAT 108446 30 100.0 36 .............................. TCAGTTGTTTCCTGCTGTTTTTCTTGTGTATCCCCC 108380 30 100.0 36 .............................. CCACGATGTCATGACATTGTATAGACGTTCCAGATA 108314 30 100.0 36 .............................. TGTTTTTTCGGATAAGGATTTTGAGAGAGTATTAGA 108248 30 100.0 38 .............................. CTAATCTCGAACCAGTCCATAAAATAGTCATCGATCTC 108180 30 100.0 37 .............................. CGGCTATCAAGCGAGAAATAAGCCTCATCGACAATCA 108113 30 100.0 36 .............................. AGGATTGGAGAACATGCTGACCAACATGTTCGTCCA 108047 30 100.0 36 .............................. CTGTAGGTATGCGTTGTTCAACATAAGTAGGGAAAG 107981 30 100.0 36 .............................. AGTCAACAGTTTCAAGTAATTCTGTTTGCTTTCCAG 107915 30 100.0 39 .............................. TCAGAACTAGCGTAGAGGATAGAACAGGTAGCTATCGCC 107846 30 100.0 39 .............................. ACGCACCTAGATCACTTATTACCTTATCTGAACTTCGAT 107777 30 100.0 38 .............................. TGAAAAGTATATAAAGCATTTTAATATTGGAGGCGATT 107709 30 100.0 37 .............................. TCCGAACGATAGCTTTCCGACACTTTGCCGATGGCAC 107642 30 100.0 36 .............................. TCCCGCAGGAAACATCTCCTTTGATGAGAGTTTAAA 107576 30 100.0 35 .............................. AAGGAATATTCGTTCGAATCGTTTTTGCCGCGTGA 107511 30 96.7 35 ....A......................... TGGTAATATGAAAGTATGGGTAGATCAAGATTAGA 107446 30 100.0 37 .............................. AACAATGCGGAAGTGATTCCGATTCCGACGCGTCCTG 107379 30 100.0 38 .............................. ACCGATAACGGTGGAAGTGCTGTTTCAACTATCGCAGA 107311 30 100.0 39 .............................. TCCTTCCTCATAAAACCCTATACCGAAACGTATGGACGG 107242 30 100.0 38 .............................. TATCTTTGAGCATGCTTTTCACTTCCCGTTTGTCCGCT 107174 30 96.7 36 .............................T CTTTTTCATTCATGAGTATTCCCCCTTCTTTGTTTA 107108 30 96.7 39 .............................T TCAGCCGCCCCGTATCCATATGCTCGTACCATTGGATTC 107039 30 96.7 36 .............................T TTGTGCGAATCATAAAAAACCCCACTCGTCCGAGTA 106973 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 99.5 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTAAATAGCGGCTATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGCCAACCTTGATATATAAGCGTTTGTTGGG # Right flank : GTGGTCTGCGATTTGACAGCTTTCGTGTCGCGTGCCTGTTTTATATCTTATGGACCGATTTTGCCTGTTTTTATCTTAGCTACGAAGATTGTCCCCTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCGCCACATTTGTTATAAAGGTGAAAAAGGGAAACAATAACAATAAAACAAACATGGAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTAAAATGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTACTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCGAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 51266-50569 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKX01000007.1 Parageobacillus thermoglucosidasius strain DSM 2542 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 51265 30 100.0 36 .............................. CGAGGCTATTTGGAACAGCAGAAAGCCGGAGGCAAA 51199 30 100.0 37 .............................. AAAGCAGCTCGGCTAAAATAAACATGGTTCGCAAAAT 51132 30 100.0 37 .............................. GCTTCCAAATCACAAAAAGAAGTTTCAGCAAACAACT 51065 30 100.0 35 .............................. ATTGACGTAATGCTTTTTCTAGTATGTTTTTAGTC 51000 30 100.0 35 .............................. TTGGCGAGGTCAAGTTCCGTTACAAATCCGTAACC 50935 30 100.0 37 .............................. TTACTTTAGCTGAGTACAAGGAAATTACAGGAGAAGA 50868 30 100.0 37 .............................. CAGCTATCTTGAAAGGTGATTGGAAAGGCGCTTGGGA 50801 30 100.0 36 .............................. CATTTTTGGCAGATGATATTACACTTTTTAATATAT 50735 30 100.0 38 .............................. GTGGATGACAAACATCCAAGCGGCGCCATCACTTATAC 50667 30 100.0 39 .............................. GCGTGCTGATAACATGCGCTGCAATCCCGCGCCATGCGT 50598 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TCGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCCGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTCGGAAAAAATCATTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCCTGGAACATATTGATTTATCAATATTTTTTGGG # Right flank : CAACTTCGCTGACGCTTTTTGCTGCCACTTTTTGAATGGGTTCAAAACGGATCAGTAAACAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTTCTTCCATAGGTAAATGCAAAACAAATGTTAACAGGGGATAAGAGAGTCCCCATGATTCAACACGATCCGGAAAATTCCGCTATATTCTCCGGTAATCTTAACATCGCCGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGATTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCCGGTTTGTATTCCGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //