Array 1 165138-163583 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSQ01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4368 NODE_1_length_610119_cov_4.54461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165137 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 165076 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 165015 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 164954 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 164893 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 164832 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 164771 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 164710 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 164649 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 164588 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 164527 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 164466 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 164405 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 164344 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 164283 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 164222 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 164161 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 164100 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 164039 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 163978 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 163917 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 163856 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 163795 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 163734 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 163673 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 163612 29 100.0 0 ............................. | A [163585] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182993-181807 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSQ01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4368 NODE_1_length_610119_cov_4.54461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182992 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 182931 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 182870 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 182809 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 182748 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 182687 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 182626 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 182565 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 182504 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 182443 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 182382 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 182321 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 182260 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 182199 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 182138 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 182077 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 182016 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 181955 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 181894 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 181834 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //