Array 1 10224-15074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUR01000015.1 Bifidobacterium actinocoloniiforme DSM 22766 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10224 29 100.0 32 ............................. AGAACATGCGCGTGATGCGCTGGGGCGACAAC 10285 29 100.0 32 ............................. CCGGCGACACGCTCAGCGGAATCGCCGCAAAA 10346 29 100.0 32 ............................. CGACACACGTAACGCCAATTTGTCAAACACAT 10407 29 100.0 32 ............................. GTGAGATTGCTAGCATCTCGATAAGTCGCTGA 10468 29 100.0 32 ............................. GGCTCCTTCGCGTACTCAATCTTGACGGCCGG 10529 29 100.0 32 ............................. GCTTTGGCCGTCCTCTTCAACGAAGAGTACGC 10590 29 100.0 32 ............................. GCTTTGGCTGTCCTTTTTAATGAAGAATACGC 10651 29 96.6 32 ............................T TGAGCCACTGGGATTGGGATTGGCGAATGCTG 10712 29 100.0 32 ............................. TACAAGGACCCCATCACACTTGGCATGATGCA 10773 29 100.0 32 ............................. GAAGAATATGCAAAGGCTGACCAGCGAATTAT 10834 29 100.0 32 ............................. TGTCTAAGATTGTAGTCAGTCACTTGCTGCTG 10895 29 100.0 32 ............................. GCCATCCGCAATCAAGCGTCGACTGACTTCCA 10956 29 100.0 32 ............................. ATTACCACCCGCCAGGGCGCCCCCGGCGGAAG 11017 29 100.0 32 ............................. CCAGACCTTGCGCCACAGTGCGCAACTGCTTA 11078 29 96.6 32 ............................T CAGTCATTATCATCCTCCTTGCCAGGGTCGGG 11139 29 100.0 32 ............................. TGATACTTTTGGGCACATCCATACACCCATAA 11200 29 100.0 32 ............................. GTCACTTTCGACGTGATGGCTGATCCGTATCA 11261 29 100.0 32 ............................. CCCAATCTTATACGCGTGGGCGAGGTACTCAC 11322 29 100.0 32 ............................. TGATTATGCTGATAATATCCCGCTAGCAAACA 11383 29 100.0 32 ............................. GAACTCCTTCTTGCACCACAAGGAGGCGATTT 11444 29 100.0 32 ............................. TACGGCGTCGGCGGTTCCGGGTTCAGCGTGGG 11505 29 100.0 32 ............................. CAGCCCTTGATGGTGGTGAGGCTGGAACTGAG 11566 29 100.0 33 ............................. TGACCCGGATGCCGCTGTGGTCCGACCTCAATG 11628 29 100.0 32 ............................. TTGGCAACATTTGGCAGACATGAACAACATCA 11689 29 100.0 32 ............................. CTCACGCCGGCCGAAGCGGACCGGATCATTGA 11750 29 100.0 32 ............................. CAACCCCAGTCCATGTCCGTGCCCTTGGTCGC 11811 29 100.0 32 ............................. TCCGACGGTGTGCAGGCGGTGGGCGGGTTCGC 11872 29 100.0 32 ............................. GGCCCCGGCATATACGCGCTCTTCTACCACGG 11933 29 100.0 32 ............................. AGAAAACATCCCCTTCCCCCTAACAGCTCAAT 11994 29 100.0 32 ............................. CCCTCAAGACCGTCGCCCCTCCTCAGACAGAG 12055 29 100.0 32 ............................. CAGGGTCGCCATCCACCGTAACTACAGATTCG 12116 29 96.6 32 ............................T AGACAAAGACCCGCAGACAAAAGAAAACCCCA 12177 29 100.0 32 ............................. ATGATTCGGCAAAGGGGGGAGGGCCTGCCTGT 12238 29 100.0 32 ............................. AAGCGAATTGGGCACCCATTTAGCTAGTGTCC 12299 29 100.0 32 ............................. TTGTGTCTCAGATTATGGAGACCCCCCGTACA 12360 29 100.0 32 ............................. GTTGGTACTTTGCGTAAGTATGGTCTTACGAT 12421 29 100.0 32 ............................. ACCAACGACTTAACCGGGTAGGCCAAGGAATC 12482 29 100.0 32 ............................. CTGACCGCCACATGGTCATACGAAGGAGGCCA 12543 29 100.0 32 ............................. GCCGGTGGATACGGGTCATCAAACGGGAAGTG 12604 29 100.0 32 ............................. GTCGACACATACAATAATCTACACAAAGATTA 12665 29 100.0 32 ............................. ACCGGCATAGGTGATGGTACCATACAGCAGAG 12726 29 100.0 32 ............................. GGTAAGATTAATAATTATCTTAATCCAACAAA 12787 29 100.0 32 ............................. CTTAAAAAATTATCCCCTGAACTGAACGACAG 12848 29 100.0 32 ............................. CGTCAAGCTGACGGGTGGGCACTCCACGACAG 12909 29 100.0 32 ............................. TAGCGCCGGAGGCTTTGGCTGTCTGAGCATCG 12970 29 100.0 32 ............................. CCTGACCCGTCGGTCTGCGAGTCGTCAAGGCC 13031 29 100.0 32 ............................. CGGCGAGGTGGATAGTTTCGACGCCAAGCGAT 13092 29 100.0 32 ............................. TTCAGCGAATCGCGCAATTCGACTAGCTTATT 13153 29 96.6 33 ............................A CGCCGTGTTCCCATTCCTCAAACTGGAGGCATT 13215 29 100.0 32 ............................. TTACGTTCACTGTCCCGGACCCGCTTGAGCCA 13276 29 100.0 32 ............................. GAGTTGCGACTCAACGAGGGGTTTGAACAGAC 13337 29 100.0 32 ............................. ATCACTTTCACATTGAAGGAAATGATTGACTC 13398 29 100.0 32 ............................. GTGAACCTGACCGTGACCAGCCGGTCCGTGGC 13459 29 100.0 32 ............................. CGAAAAGCCCCTTTTGAAGCTCCGCTTGTTTG 13520 29 96.6 32 ................T............ GGCGTGACATCGGGCATGGTGTCGGGCATGAT 13581 29 100.0 32 ............................. GCAATCAAGGATTCGGCTGGCCCGGTGCTGGA 13642 29 100.0 32 ............................. GCAGACAGCCAGTCACCGGCCTGTTTGACAAC 13703 29 100.0 32 ............................. CCCGGTAGCGTGGCGTGGCCATGACGGTCACC 13764 29 100.0 32 ............................. GCCGACCAGGCATGGCATGCAGGCACCATGAC 13825 29 96.6 32 ..A.......................... CCGAAAGTCATCCTGCAACCGTCCATTAACGA 13886 29 100.0 32 ............................. TTCTCAAGATGGATGCTGGGCGTCATGTCCGG 13947 29 96.6 32 ...C......................... AACGTGAAGGGCATTTCCGACGCGGCCAAACA 14008 29 100.0 32 ............................. CGCCACCAGCGCACAACGCCACGACGGCAATA 14069 29 100.0 32 ............................. TGTTCGGCCAGCTCACCTCGCTGCGCCCCTTC 14130 29 100.0 32 ............................. TATATATAGAAGCTACATCTAGTGGCGCTCAA 14191 29 100.0 32 ............................. TGCGCCGTGAACCGGTCGCCGGCGGGACCACC 14252 29 100.0 32 ............................. AGGTCGTTATCGCCCAGAAGGTCAGGATTCTT 14313 29 100.0 32 ............................. CCGTTAGAACTCATGGTATTGCTCCTCGTATC 14374 29 100.0 32 ............................. CAAGCTGGACGCCGCAAAAAAGGTAAGGAAAA 14435 29 100.0 32 ............................. CGACGGCAAAGGGTCGGGCAGGTCTCCGTTCG 14496 29 100.0 32 ............................. CAGCCACAATCCGGCCGTGATGCGTGCGCCGT 14557 29 100.0 32 ............................. CCGTCCCGAACTATCTGCTGGACCGGGATTAC 14618 29 100.0 32 ............................. GCCCGCGCACGCGAAGTCGGGGCCCTCCTAAA 14679 29 100.0 32 ............................. TGCTGCGCGTCATCCAGGTTAGCCATGTTAGG 14740 29 96.6 32 .........C................... GCCTGGTTGGTGTCCAACCGGTCCCGGTCCTG 14801 29 96.6 32 .........C................... CAGTGAGCCCGTCGGGCGTCACGAACCGGCCG 14862 29 100.0 32 ............................. GCCGCATAGGTCGCGTAGGCCGAACCGTAGAC 14923 29 96.6 32 ......................C...... TACCCCCTACCCCTCAGAATCGTTGGAATTCC 14984 29 96.6 32 ................T............ AAATTGGAGGAACAAATGGCTGATGTGACCAA 15045 29 93.1 0 ...........................AT | C [15070] ========== ====== ====== ====== ============================= ================================= ================== 80 29 99.4 32 GTGTTCCCCGCATGCGCGGGGATGATCCC # Left flank : TATGGGAATGAATGAGCGCGTAAGGATTGGGCTCTGATGGTCGTTATCGTTTTGACGGCATGTCCGGTCGGGCTCCGAGGCGATTTGACTCGCTGGCTTTTCGAGATTTCGCCAGGGGTGTTTGTGGGGCATGTTTCCGCCCGTGTGCGAGACCGGTTGTGGGAAAGAGCGCTGGGCCTGGTAAAGAGCGGAAGGGCCATTATGGTCTATTCTGCCCGTAATGAGCAGCATCTTGCTTTCAAAGTTCATCGGGCCGATTGGCTACCGGAGGACCACGATGGGGTCGAGCTGGTCAAGCGCCCATTCGGCAGTGAAAAGGCATCAGTCTCCGGCAGTCAACAGCACGGTTGGAGCAAGGCAAGCAAATACCGGAAAGCGCGCCGCTTCAGCTACCATTGACCGTCATCCTCAGTTTTTCCCCGCCTCACCTCCACTGAACAAGTAAATGTAAAAGCCATCTTCTGCGATAGCTATTGCTGCAATACTAACGATTCTCAAGT # Right flank : TTCCTGGATGACTCAAAGCGAATATGTAGGGTCTACCGGAGGAGTTGCTCCGCGTACGGCTGGATGACCTCATATTCCGGGTCCTTCGCCAGATTCTCGACCCCCTGCGGGAACCTGGCGTACAGCTCGGGATGATCGACGGCGATATCAAGGGCGTCGGCGATGGCCAGGTCGGGCTCGCCGGCGAAAATGGCTTCTCTTGCAAGTTCCTCGCAATCTTCGTCTAACCCGGCTACCACCTTGAGGGACTGCTCAGCCAGATCCGTGAGCTGGTCAAACGTATAGTTCACTTCCCGCCTCCCTGTCTCCGAAGCTCGTCACGGTTGACTCCCGTGGGGGATTCTACCGTTTTTCGCGTTTCTGATTACGCCTGTGCCTTCGGGCGGGTATGTTCGGTCAATGTAGTATTCCCGCCTGCATGGGGATGATTCTTTGATTCGACAGTTGCGGTACACAGACGTTTCGTGCCCTCCCCCTCCCTGTGCGTTCGGGGATGATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //