Array 1 47869-44239 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMB01000222.1 Pseudomonas oleovorans strain East River isolate A passage control Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47868 29 100.0 32 ............................. GCACCGCGCACGCACAGAGGCAGGATCAGCGC 47807 29 96.6 32 ............................C GGCCCGCCACTTCCTCACCCGCGCCCTGGAGC 47746 29 100.0 32 ............................. GCCGCCGAACTACAGGCCCTGGCCGGCTTGAT 47685 29 100.0 32 ............................. CCATTGAAAACGCTGGGCTTTCTCCTTTCTCA 47624 29 100.0 32 ............................. CAGGCCAACGCCACCGCCCTCGGCATTCCCTG 47563 29 100.0 32 ............................. TTGATCGTCGACGGCAACGTTGAAGTTGAGAT 47502 29 100.0 32 ............................. CCAAGCAGGCCGACCAAATCAGCAAGGTCATC 47441 29 100.0 32 ............................. GCCATGCAGGCCAGCCGCGACAAGGTTCGCCA 47380 29 100.0 32 ............................. TCTGAATGCACCCAGTAATCGTGACCGCCGGC 47319 29 100.0 32 ............................. CCCAGCCCACCGGCGCCGGCACCGGCCGAGCC 47258 29 100.0 32 ............................. GCCGCTCCGGCCAAGCTGGAGAAAGTAAAGCT 47197 29 100.0 32 ............................. GCGTTGCAGGACCCCATAAACGGTATCAACGC 47136 29 100.0 33 ............................. CTGGTGGTGGCGCGCCTGCGCGCCAATGGCAAG 47074 29 100.0 32 ............................. CCTGCTCTTGGGCTTCTGCCAGGTGCGCGGCA 47013 29 100.0 32 ............................. GCCATGCAGGTGAGCCGCCTGCTCCTGATGCC 46952 29 100.0 32 ............................. ACAGCTACAGCCAGCTAAAGCGCGACGAGGGC 46891 29 100.0 32 ............................. GCGGCTTCCGTTTCTGGGGCTCGCGCACCTGC 46830 29 100.0 32 ............................. CGCCACCGTGATCGAGTACCAGGTCATCGCCG 46769 29 100.0 32 ............................. GTCGCCGAAGTGCTGGCCGGTACCGGCGGCGC 46708 29 100.0 32 ............................. CTGATCGTCGACGGCAACGTCGAAGTGGAGAT 46647 29 100.0 32 ............................. GCACCCTGGCCGCCGCGCTGGATGCCATCGCC 46586 29 100.0 32 ............................. GTCAGCGCACGGTGCTTGATCGTCCGGTTGTC 46525 29 100.0 32 ............................. ACGATATGGGTGCATGAGCCCAGCCGCCAGGC 46464 29 100.0 32 ............................. CGCCGGCTGAAGCTGTTACGGCCTGCCCTGGA 46403 29 100.0 32 ............................. TTGCAGCGGCTGATTCTTGTCAGGTAAGCCAT 46342 29 100.0 32 ............................. CCAACATCAGCCGGCACCTTGCCCAGGTAGGG 46281 29 100.0 32 ............................. CTCTGGACGGCCGTTTACTGCCGTGCCCTGCG 46220 29 100.0 32 ............................. ACGCCATCATGCGTATGACTGCGACGGTGGCC 46159 29 100.0 32 ............................. GTGACGGCCTTGCGACCACGCAACAACGCCCC 46098 29 100.0 32 ............................. GCGGCACGGTAGTTACTGAGCCGATTCTAGCC 46037 29 100.0 32 ............................. CCTGCCACCACTCCCCGGAAAGCTGGGGACAG 45976 29 100.0 32 ............................. GGGTACTGGACTGACGATGCCAGGGTGAAGAT 45915 29 100.0 32 ............................. ACATACAAGGCGCATCGCCTGGTATGGCTTAT 45854 29 100.0 32 ............................. CACTGGTGGCTCCTGCTCGACGACCTCAGGCA 45793 29 100.0 32 ............................. GCGCCGCCGTTGCAGGCGGCGCACTCCATCAG 45732 29 100.0 32 ............................. CCTGCTGCGGCACCCCTGCACGGAATGCCAGG 45671 29 100.0 32 ............................. GCTTCATCGGGCGTGCCAGGGTATTCCTGCCA 45610 29 100.0 32 ............................. GCCGGCAGTGCGGCGGCGTTCTTGCCGTCCTC 45549 29 100.0 32 ............................. CATCACACCAATGTAGTGGCCGCGGTCTTCAA 45488 29 100.0 32 ............................. GCCGACCCCTTCACTGTCAACCCGCTCTTCGC 45427 29 100.0 32 ............................. CTCGACGAGCTCAGCGAAGGCCTGATCGCGTT 45366 29 100.0 32 ............................. ACGGGCGCCGATGCCGGAACTGCGGACATAGC 45305 29 100.0 32 ............................. GCACTCCAGAGTGGCTGAAACTTCGCCTGGGA 45244 29 100.0 32 ............................. CAATGCGTTAACTGCCCTGGTGCGACTGATCA 45183 29 100.0 32 ............................. GCGAAGCGGTTGCCGCATTCGCTCTTAACCTG 45122 29 100.0 32 ............................. GGCTGCCCGGCCTAGCGCCGCAACCGGCTCGC 45061 29 100.0 32 ............................. AGTGGCCAAATTCGCAATATCAGACATTCATG 45000 29 100.0 32 ............................. TTGACGTGATCCTGTCCGGCGAGATCCCGAAA 44939 29 100.0 33 ............................. ATTGGCCAGCTCCAGCGCGCTGGTAGCCTTACC 44877 29 100.0 32 ............................. GTTCGCTTCCTCGCACCGAATACACCGGTGAA 44816 29 100.0 32 ............................. AGCAGCGTGTCGTTTCTATTGTGTGAGGCGAG 44755 29 100.0 32 ............................. ATCACGCATTCGGCTAAGGTGCCAGGCCAGAC 44694 29 100.0 32 ............................. ATAAGGCAGGTCAATGCCCTCGCTAAACCCTA 44633 29 100.0 32 ............................. TCTAGGCCAGCCGTTGCGCTTTTAGATGCGCC 44572 29 100.0 32 ............................. GTGCCGTAGCCTGCTGCTATATGGCCAGCCTC 44511 29 100.0 32 ............................. CCATCACCCAAGCCCCAGGCCCCCAGCAGGTG 44450 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 44389 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 44328 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 44267 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAGCGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTCTGGGGACAATTGGTTACGCTAAGA # Right flank : GGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63243-62054 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMB01000222.1 Pseudomonas oleovorans strain East River isolate A passage control Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63242 29 100.0 32 ............................. GCGACCATGGCGCGCAGCGCCCAGCCAGGGTT 63181 29 100.0 32 ............................. CCCGGAGCGCGCACTAATGCACGGCCTGAACA 63120 29 100.0 32 ............................. ACCCGGAGCGCATTGGCCTGCCTGAGCATGAT 63059 29 96.6 32 ............................T ACCGGGCAGACGGCATTCAACAATCTCGACGC 62998 29 100.0 32 ............................. CCCCGATGGGCATGTTTGATGATGACCTGATC 62937 29 100.0 32 ............................. TCGTCGCGGCTGATGTTCTTTATTGCCGCGAA 62876 29 100.0 32 ............................. CGCCCCGGCGCCGTGGCAGGCAAGGAAGTATC 62815 29 100.0 32 ............................. CTGCATGATGGTTTTGCCAAGGCCAGTGTCGG 62754 29 100.0 32 ............................. CGGCCCGGCTACCCGAACGGGTAATAGTTTGT 62693 29 100.0 32 ............................. GCGCGCATCCACTCGCCAGCACGGGCATTGAT 62632 29 100.0 32 ............................. ATGTCTGCGCTAAACGTCCAGCTGAAGCTGTC 62571 29 100.0 32 ............................. CAGATGGATGTACTGCTCGAATCTGGCTACAC 62510 29 100.0 32 ............................. GTAAAAGTAAAAAAGGGGCGCAGGCCCCGAAA 62449 29 100.0 32 ............................. ACTTGCAGATCCGCCTCAAGGTGGAAGAAATG 62388 29 100.0 32 ............................. CGGATGAGTGGGAGGATGCCCGGCCATCAGGC 62327 29 100.0 32 ............................. GCGATCGCAACCAACGTCGGCAGCTATCGGCC 62266 29 100.0 32 ............................. CGCACCGCGTTGCCAGCCGCCCAACCGGAGCC 62205 29 100.0 32 ............................. CATGACGCCGCTGCGCGTGTTCCAAGCTCTGC 62144 29 100.0 33 ............................. TTCTCCCGCGCCGATAACCGATTCATCGACCAG 62082 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAGGCGCCGGTCAACTCGATCTGGGAGGGTTCAGGCAACGTGCAATGCCTGGACGTGCTGCGCGCTATGTCCAAGGAACCCGGTGTGCTCGATGCGCTGTTCGCCGAGCTGGGTGATGGCCACGGCGATACCCGCCTCAAGGCGCACATCCAGCGGCTCAAGGCAGATTTCGCTGACACAGCCGATATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCGTATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGCCGTCTTTGGGCCAAGAGTGGCGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGACTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCAGGGCGGCAGGCTGATGAGGCGCTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6904-6454 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMB01000212.1 Pseudomonas oleovorans strain East River isolate A passage control Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6903 28 92.9 32 .C..........A............... AGTTCCAACCAGGCTTCGACGAGCCTACGACA 6843 28 92.9 32 .C..........A............... TGACCAACTCCGTCATCAAAGGCGAACAGCAT 6783 28 92.9 33 .C..........A............... ACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 6722 28 100.0 32 ............................ TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 6662 28 100.0 32 ............................ TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 6602 28 100.0 33 ............................ GATCACGGCCAAACGCCCGTCGGCCACCATCAA 6541 28 96.4 32 ...........T................ TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 6481 28 75.0 0 ...........TA........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 93.8 32 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGCGCCTA # Right flank : TTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGCT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : CCTCACTGCCGAATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4712-5880 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMB01000149.1 Pseudomonas oleovorans strain East River isolate A passage control Contig_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4712 28 100.0 32 ............................ CCACATCACCCTGACGCGCGCAGACGGCGACC 4772 28 100.0 32 ............................ GAATACGAACATGCCGAGGGCCATCATCATGG 4832 28 100.0 32 ............................ GTCGAGTGATCCCCGCAGCCCGGCTCCGGCCG 4892 28 100.0 32 ............................ TGAGTGAGCCGTTTGCTGATGTCGCCCAGGGC 4952 28 100.0 32 ............................ TTGGCGCCCAGCAGTGCCTTGAGGCCGGTGTA 5012 28 100.0 32 ............................ TTGTAGGTGCCTTTGTCCACCAGGCCGGTGTC 5072 28 100.0 32 ............................ GCCACGCCTACCAAGGCGCTCAATCAACAGTT 5132 28 100.0 32 ............................ AGAACACCTATGGTGCTCGCGTCTGGCTGGAG 5192 28 100.0 32 ............................ AAGTTCCCCGACAAAGCGCAGGAGGTCGTCAC 5252 28 100.0 32 ............................ CGATCACGCTCAGCAGCAACGGCGGCGCCTGG 5312 28 100.0 32 ............................ GCATCACCGGCCACGCGCACGTCAACAGCCGC 5372 28 100.0 32 ............................ GGCACCGTCCACCACTTCGATCTCGGCCTGTT 5432 28 100.0 32 ............................ GGCACGTAGCGGAAGTCAAAGAAGACCTCCGG 5492 28 100.0 32 ............................ TGTTCTGACCATCATGCTGGCGGGCGAAGACT 5552 28 100.0 32 ............................ GCCACCAACCAGGCCATGGCCCAGCAAGAGGC 5612 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 5672 28 100.0 32 ............................ ACGAACTGCTGTGCGGCTCCGGCCATAGCCTC 5732 28 100.0 32 ............................ CGCAGATGATGGCGAAGCCGCCGCCGGTGTAG 5792 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 5852 27 82.1 0 ......................TT.CG- | AA [5873] Deletion [5879] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.1 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //