Array 1 267720-271709 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB455575.1 Methylotuvimicrobium buryatense 5G METBUDRAFT_scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 267720 28 100.0 32 ............................ GCTTTGATTTCGTCAATGGCGGTTTGTTCGCT 267780 28 100.0 32 ............................ ATGAGATACAGGAAAGAAAACATGGCGGGATT 267840 28 100.0 32 ............................ AAGTCGATCTTGCTAGACCACGTTGTTGGGGC 267900 28 100.0 32 ............................ ACTTTTTTGTTGCGATATTTACTCGACTTTGT 267960 28 100.0 32 ............................ GCGCTCTTAGTGTGCGATATCGTGCTTATGCC 268020 28 100.0 32 ............................ GCTTTATGTCGATTCATAATTCTTCCGGCATA 268080 28 100.0 32 ............................ TCTTCAATCAATCGTCTTGCGTCAGACCACTG 268140 28 100.0 32 ............................ ATTCTGTTTCGCTTTTCTTCTCACCGTTTTTA 268200 28 100.0 32 ............................ GTTGTAGTCACGAAGCCGAACCAGCGTTGTTA 268260 28 100.0 32 ............................ CAAAGCTAGTAATGTCTGAACCGCTGGACATT 268320 28 100.0 32 ............................ TTTGATGTCGAGCAGCGACATCAGGCCGCGGA 268380 28 100.0 32 ............................ AGGTCTTTAGCGGTATGCTCGGGCGGAGGCGG 268440 28 100.0 32 ............................ GTAAGTAATTTCAAGCGCTCGAACCGTGCCGA 268500 28 100.0 32 ............................ GATCCGACAATACCGGAATGCTCTTTGGGTGG 268560 28 100.0 32 ............................ AAAATCGCACAGCGCGACACCGGACAAGCCGT 268620 28 100.0 32 ............................ TCTTTTTATGGTTGCGCCTCTGATGGGTTAGC 268680 28 100.0 32 ............................ AGTCCCGGAACGCCCAGCAGCCTGCTCCCGCA 268740 28 100.0 32 ............................ GCTTTACAGTATGAACATTGTTGACCGTGACA 268800 28 100.0 32 ............................ ATTAGTTAGCACGCTCTTGAGTCGGCAAACTA 268860 28 100.0 32 ............................ AATCAAAAGCCGCGTTCGGTGAAAACTCGATC 268920 28 100.0 32 ............................ TAACCCAACCCGCGAGATACCTATGCCTAAAG 268980 28 100.0 32 ............................ CAGCGCTTCGCGGAAGAAAATTTAAATAATTT 269040 28 100.0 32 ............................ GTATAACGACAAAAAACGCGGCATGAAGGTTG 269100 28 100.0 32 ............................ GTTTATGAGCAACTCACCGTGCTTTGCTCTCC 269160 28 100.0 32 ............................ ACCTAATAATCCAGATCCTGACCCTGGGCCTA 269220 28 100.0 32 ............................ TATATTGTCGCGAGCCGCTGCCCGCTTCTCGT 269280 28 100.0 32 ............................ GATCCTGACGACGGCTAACAATGCGATTGCTG 269340 28 100.0 32 ............................ TTATCCGGCAAACCCTCGCACAACAGCGCAAA 269400 28 100.0 32 ............................ ATTGGCGGCTAACGATTGGCTCGTGATTAGCG 269460 28 100.0 32 ............................ AAATTGTTTATTTTGAGTCTAAAGATGTGTCG 269520 28 100.0 32 ............................ TTGTGTTTTGCCACTTTGAGCAGGACCGACAA 269580 28 100.0 32 ............................ AACAACACGAAGATAGGCAGCAGCACCAACAA 269640 28 100.0 32 ............................ GGTGCCCCACGGCGTAGTCTCATCCTTTGGCA 269700 28 100.0 32 ............................ AGACGGCTTGATTACGTCGACGGTATACCGTG 269760 28 100.0 32 ............................ TAAATTAAATGCACCGGCGGTGATGCCAATCG 269820 28 100.0 32 ............................ TATTCATATCAACGCCGCAAATACGCGGCATC 269880 28 100.0 32 ............................ AGAAATCAACCGAGAATGCCAAGAATGCGCCC 269940 28 100.0 32 ............................ GTTCTAAAGTCCTCATCCATCGCGAGTATTGG 270000 28 100.0 32 ............................ GCAAACTATTTCAGTTGATCTACTCAACAATC 270060 28 100.0 32 ............................ GTCAGGCAGGAATGGCGGAACAATAGTCGGTA 270120 28 100.0 32 ............................ GTTATGATGTCCTCCGGAATGTTGAATGCTGG 270180 28 100.0 32 ............................ AAGAGGCTCCGCCCGAAACGGCGGTGTTTTCG 270240 28 100.0 32 ............................ CTATAACGCAATGCCCACTTGCTGCGCCCACA 270300 28 100.0 32 ............................ TGAGTCGTGCGTCGATGCGTTTGTCGGGCATC 270360 28 100.0 32 ............................ TTTGACATGCGGCAGCAGTTCGATAAATCCAA 270420 28 100.0 32 ............................ GTTTCCTCCCAGCAACTACCCCGGCCAATAGC 270480 28 100.0 32 ............................ CGTCTAGCATCGACACGCGGCCGGTCGGCGAC 270540 28 100.0 32 ............................ CTTTCTTCATGTCAGCCCTTGAGAGGGCATTG 270600 28 100.0 32 ............................ GTCGACCGTCGCGCAGCTGCGTCCAATGCGTT 270660 28 100.0 32 ............................ TTGAACTTCAAACGGGGTGGCTTCTATTTGGA 270720 28 100.0 32 ............................ GACACAGCGCAATGCATACGCCTCCTGGTCGC 270780 28 100.0 33 ............................ CATTGTTTTATCAATTACCGGATGTTTCAGTTT 270841 28 100.0 32 ............................ ATGGGGTAGAAGTTCTGCACGAGTTCGTAAAC 270901 28 100.0 32 ............................ TTGGCCCTGGCATAGACGGCGTGGCGGTAATG 270961 28 100.0 32 ............................ TTTTAAAATGACTTTATTGAGTCTAATTTTTG 271021 28 100.0 32 ............................ GATGATTTCTTGCAAGTTAGAAAAGCCAAGCG 271081 28 100.0 32 ............................ GTCAGACACATAGAAACCGCCATCTACCGCCG 271141 28 100.0 32 ............................ TAGCCTCTTTATTTGCGGTATCAAGAAAACGG 271201 28 100.0 33 ............................ CACGCGGAACCGTTTGAAGCGGGTAATCTTCGG 271262 28 100.0 32 ............................ ACTGGTATTACAAAATTTACATGCCTAACCGT 271322 28 100.0 32 ............................ TCTATGTGACGACAACGACCCTGACGTTCCGA 271382 28 100.0 32 ............................ TCTTCTGACCTGGACTTGACCCAGGCTTTAGA 271442 28 100.0 32 ............................ ACATCGACGGCGACATCACCGTGCACTACTCC 271502 28 100.0 32 ............................ GGTATTAAATGCGCCGGCGGTGATGCCGACCG 271562 28 100.0 32 ............................ GGAGGCTTTAGCGGTCTCGATATCGACCTGTT 271622 28 100.0 32 ............................ ATTGATTCTATAGCCGAATATTTCATAATTCG 271682 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 67 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAGCTTATTAAGCAAACCTTACCGCTATGCGATCAATGCGGCTACTCACTTAACGCGGGATAGTTTAAGGTTAATCCGTTCGTGGTGAGCCTGTCGAACCATGAGCGGATTAACCTTCCCCCTTCGACAGGGCTATCCTGAGCGCAGCCGAAGGGCTTAGGGCGAACGGTTAATTCTTAGTGCTTTTGTCCCTCTTTAAGTGGGAAGCCATCAATGCTATCTGTTGGATAATTCCCGTGCGGACAACCCGTTTAAACAAGTTGCAATTGTTCGGAACGGGAAAGCCAATTTAAAGCTGAACTCAATTCCGGAATGGACAAAGGAGTTATTGGCGCATTAATTGCTTTATACTGAAAATTAAGCGATTAGACCCAAAAATTTTAGGTTCTTTAACAATATAGAAAAATCAAATAGTTATAAAGCAACGAAAAATAATGGTTAAAACGGTTATTTGCGGATAAGTAGCTGTTGCCATTATTTTTTTGCGCTTTATACTACA # Right flank : ATGTGACTCAAAGAGCCGCAAAGTCCTAACTGGTTTACTCATAAGCGCCAACTTAGTGCCTATTCTGTGGTGTGTTTATGGCTTTATTCGTCATGTCGGTATGGGTGTCGATATCCAGGTTACATGGATGCTAAGCTACGCATTGCCATCCGTGGCACTGGATTCCGCCAATCCCTGGCGGAATGACACGTTCCTTCCTTAAGTTGGCGCTTATGACCAGTTTGCTTCCTTGCGCAGCCAAGTAAACGCTCTTTGGAGAATTGTCGAAAGAAGTCGATTCCACATAAAAAAATGGAAGAAAATAGTATGAATCTAGTTGAAATAAAATGATTTTTTTTAATCCTTTGGTAGAATACGCGCCGATCGTCTTTGCGCCGTTATCGTTTTAAGTTAGATAGGCCGTTTGCGTTTTAATACAGATTTATTTAAAGCGTTCGGTGTAATGATTGAGTGATTTCGCCGGGTGCTTAATTCGGCAATTTTGTAGATATCCTTTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 684847-686203 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB455575.1 Methylotuvimicrobium buryatense 5G METBUDRAFT_scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 684847 37 100.0 32 ..................................... CTATTATTTGTGTGAATAGTTCATTATTAGAT 684916 37 100.0 30 ..................................... AAATCCGGGAAAGATTCGCGCAACAAGTAG 684983 37 100.0 30 ..................................... ATATATATATATATAAAGTTTAGGTTATAC 685050 37 100.0 30 ..................................... ATAGCTTGAGCATTGACACCTTTAACAATA 685117 37 100.0 33 ..................................... CTAAAACAAGCAACAATTTTTCTAGCCCGTCAA 685187 37 100.0 33 ..................................... TGGTGGTTTCGTTGAAGCTTTTCATGATGTTCA 685257 37 100.0 32 ..................................... ACACGTTGCCGCGCCATGCGTCGAACGGCACA 685326 37 100.0 31 ..................................... ATGATTTCGAGTAACGATGGTTGTCCCACTC 685394 37 100.0 33 ..................................... GCAATTTCGATTTCAATATCATTGGATGTCATT 685464 37 100.0 34 ..................................... GTGAGCGATTACACGCCCATTTTTTATTATATCG 685535 37 100.0 28 ..................................... GAACTGCAAACAGGTGGCAAATCCATTT 685600 37 100.0 35 ..................................... AATCCGTCCGCCGTAAAGTGGGAAATTACTTTACC 685672 37 100.0 34 ..................................... GTATTAGATTAAACCTTTACCGTTTATTTTAATA 685743 37 100.0 34 ..................................... CCTCTTTAATTAATGGTATTAGAAAGCCATCCGT 685814 37 100.0 33 ..................................... GTCGGCAGGGCCGAGAGCCTGGATTGTTGGGCG 685884 37 100.0 31 ..................................... GCCACATTAACTTAAGCTTAAGGCTGAAATG 685952 37 100.0 34 ..................................... TTCTTCCGGGGCCTCGTTGAGGTGGGCGAATGTT 686023 37 100.0 35 ..................................... TGTAGTCGGGTTTGCTGGACAGGCGGAGTTGATGG 686095 37 100.0 35 ..................................... TAAGGTTTCTTGCCAGTCTGTCCAAATTTCTTCAA 686167 37 91.9 0 .............G.T.......T............. | ========== ====== ====== ====== ===================================== =================================== ================== 20 37 99.6 33 ATTTGAATACCAGACCTTATTAAGAAGGGATTAAGAC # Left flank : CGCTTTTACATCAACGGCGGTTGGTTGGAACAACATGTATGGGGCATCTGCCTAAACCTGAAAAAAACTCTAGTATTGCAAGACGTGGGCCGAGGCATCGAGGTCGAACGCAACCACAGGAAGCCGCCTATCAGGAATGAAATGGATATCGCGCTGCTCAAGGACAACCGGCTATACATCATAGAATGCAAAACCCATCACGACAAAAATCCGGTCAACAACAAAAATACCCAGGCATTGTACAAACTCGATAGCCTCAAGGATCTATTGGGAGGGTTACAAGCCCGCGCAATGCTGGTAAGCTACAACCCGCCGAATAAATACGATCTGCAGCGAGCGCACGATCTCGGCATCGCCATTTGCGCGCATCGAAGTTTGGCGCATTTATCGCAAAAATTGACGGAATGGATCAGATGAAAGCAATTAACTTTTCAAAAGCCGAAAATCCCGCCAACCCCCTTTGCAACCCATTGATAACAAAAGGAGAACAGAGGCGAGCT # Right flank : CTGCGGTTTTTTTGATTATTTTTATCGTTCCCACGCTCTGCGTGGGAATGCCTGAGTACCGTTCCAGCGGTACGAGACGCTAGAGCGTCTCGGTCTTCATTCCCACGCCGGAGCGTGGGAACGATAAGGGCTGTAAATAATTACTATTAAGAAGGGATTAAGACTTGGATCTCTGTTGATGTTTAGCACGGTTTTGCCTGAGTACCGCTCCAGCGTCTCGGGCTGCATTCCCACGCTGGAGCGTGGGAACGATAGGGGGATGTGAATAATTACGGCTCTTCCGGATTTCCCGTGGTAATTTGAAAGATTAGTGACAAAGCTAATTCTTAATGAATAAATTACATTTAATACCATCTGCTTAAAGAAAATCTTCTTTTTTTATTCGGTGTCGATCCGCTATTACCACGGCAAGTTCGGAAGAGCCATAATTACGAGCAATCTACATAGCAGCAATTCCCCATTTGAGAGTAAAAAAGGGTACGGAGTGCACTTTCATCGTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAATACCAGACCTTATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 982714-983968 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB455575.1 Methylotuvimicrobium buryatense 5G METBUDRAFT_scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 982714 32 100.0 32 ................................ ACTTATATAGTGTGAGATATTCAGCGTTGACA 982778 32 100.0 32 ................................ ATATCCTGCTTTAAATGCTTCAAAAGCATCAT 982842 32 100.0 32 ................................ TCAGTGTCAACCGGAAAAAAACTACATGGATA 982906 32 100.0 32 ................................ TTCTGGTGTCGTTTTAAAATATTTACAGAGAG 982970 32 100.0 32 ................................ ATCTTCAATGCCCCACTTGCTAGCATATGAAG 983034 32 100.0 32 ................................ AACAATTATTGCAGTAAAAACTCGGCTATTTG 983098 32 100.0 32 ................................ GCTCTGAGTATGGGGCTGCAACTATAAAAGTT 983162 32 100.0 33 ................................ TTTGCAAATATCGATTTCCTCTCGGATATCAGA 983227 32 100.0 34 ................................ GGGTCAGGGTCGGGCTCTGGGTCTGGGTCCAGTG 983293 32 100.0 33 ................................ TTTGATTTTGCGTTACGTCCGACAGTCCGCGGC 983358 32 100.0 32 ................................ GGGTCTGGCTCTGGGTCTGGCTCGGGATCGGG 983422 32 100.0 33 ................................ TTAGACTTGCAGAGTCGCCGGGCGGTATGCAAG 983487 32 100.0 32 ................................ ATCTTTAATGCCGGATAATTGCATAAACTGTG 983551 32 100.0 32 ................................ TATTTCGAGGTTCCACTATGCTTTATCAAGTT 983615 32 100.0 32 ................................ AGCTAAAAAAGCTCGCAACGGCGGTTTATCTC 983679 32 100.0 32 ................................ TTGCCCTCGATGCTGTGATGAGACCGGTCCAA 983743 32 100.0 33 ................................ GATTCAGTATCGAGCAGCAAGCGAAGCTCGCGC 983808 32 100.0 32 ................................ CGGGTTTTGTTGATAGCAGCACTTACGAAACC 983872 32 100.0 33 ................................ GCTGCTGAGTCGTTTTTTCGGCTTTAGTGTATC 983937 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 20 32 100.0 32 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GAAATAATGGGAGATAGATCGATGATGATACTGGTGACCTACGATGTTAGTTTTAAGACCGAAACCGGGCCCAAGCGCTTGCGGAAAATCGCGAGACTTTGCCAAGTATTCGGGCAACGGGTTCAATACTCGGTGTTCGAGATCGAAGTCGATATGGCTCAATGGACGCAGTTGAAAAACGACCTGATTAATGTGATGGACCCGGAGGAGGATAGTTTGCGGTTTTATTATCTGGGCAACAATTGGGAACGAAAGGTAGAACATGTTGGAGCCAAAAAGGTATTGGATTTGAATGGGCTGTTATTGATGTAGCGCGAACCCCAAGTACTCATGAAAATGCTTGGGGTTTCGCAAAATGCCTGTCAATGCCCAATCGATTGATTTATTTTGTATTCTTGTTATTGCATGGCGTCTGACTATAATGAATACCGTATTTGTTTCGATAGGTTCGCATTTGAAAGCGCGTAAAGCCTTTGATTTCAACCGATTGGGTAAATGCA # Right flank : CACACATTTGATCGACGGAAGGTTTCTTGTCGAGGTGAAGCGTCAGGAAAGGTCAATATCTGTCTTATTAGGCTCTTGAAAGGTATAAAAAGTCTGAAATATGCTTTGAGCTGCTCAAATATTGGGCACTTACATAGGATTTCAAACTTTACGTATCAGTCTCCGCGCAACCACAAATAACAATTGACGGCTATATGATGTCGATTTTATGCTCCCCGACAATGAAAGTATTAATAGGTTTGCTAACATTATTAGACGTATAGAAGAAAAAAGACTGATAAATGCTGTTCAAATTCGTACCATAGAAATAGAAAAACTCCGCGATACCCTGCTTCCCAAACTCATGAGCGGCGAAGTGCGGGTGAAAGTTGCCTAACTGCACAAAAAAGCGCATCATTCGATGACATAGTACGGAGGACATTATGCGCACGACGGTTGTTTTAGATGATGACTTACTCGAAAAAGCCCAAGCCTTAACCAACCTAAAAGAAAAATCCAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3816864-3819757 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB455575.1 Methylotuvimicrobium buryatense 5G METBUDRAFT_scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 3816864 29 93.1 87 .........G....G.............. CTCTTTAACAATCCGGAAATACCGAAAATAATCGGTAGAAATTTGCAGGTTGATTTTCTGTTTATCTAACAATCGGTTAAGATAAGT 3816980 29 100.0 32 ............................. TCATAGGGTCGGAACACCTACGGAGTACAAAG 3817041 29 100.0 32 ............................. GAAATTTAAACCCACCTATCCCACCCTCGACC 3817102 29 100.0 32 ............................. AAATGTTCGCGAGTTTCGTAATCTGGTATTCA 3817163 29 100.0 32 ............................. TTAATCCGGATGGTACAACTACAATCTCAGAA 3817224 29 100.0 32 ............................. TCGTCGAGATAGAAAAGCGCGTATTAACACCA 3817285 29 100.0 32 ............................. CTTGCTGAGTTAATAGGGGTAAAACCGGAAGA 3817346 29 100.0 32 ............................. ACTACTATTGCATAGAAGATGATTGCTTTGTA 3817407 29 96.6 32 ............................T GGTTGCCGATCAATTTATTCAATCGTTGAATC 3817468 29 100.0 32 ............................. TGATTGTCTGGATACGGGCTAATCGTCCTGAA 3817529 29 100.0 32 ............................. CCAAGGTGGAAAAATTGCAGATGCACAATGCT 3817590 29 100.0 32 ............................. TCTCATCGTGATCGCCTTCGAGATGATGCCAA 3817651 29 100.0 33 ............................. CACTGACACGATGGGGATTAAAACCGGTTTGTC 3817713 29 100.0 32 ............................. GCGAGGTTGATCTAGGTGAAATCGGCTTAATC 3817774 29 100.0 32 ............................. CATTCCTGGAGAGGAAGCGGAAGTCAGTAGAG 3817835 29 100.0 32 ............................. ATTAATTAAATCGGATAAACGCCGATTATCAG 3817896 29 100.0 32 ............................. CGTTAGTTTGATTTTATTTTAAAGCGGTGCTT 3817957 29 96.6 32 ............................C AGCTATCTCGACAACACCCCGCCCAAAGCCCG 3818018 29 100.0 33 ............................. TTCGGCGTAACTCACGCCACGGCGCCATGCCGC 3818080 29 100.0 32 ............................. ACTATTTTCAAAGTCTCTGGGATTCCTACTCC 3818141 29 100.0 32 ............................. ACCTGATTGCGATGTATTGGGCGGCATTGGAG 3818202 29 100.0 32 ............................. GTGTGGCTGTACATTTAGCAGTAGATTTTCAA 3818263 29 100.0 32 ............................. TCTTCAATTGACACCAACAATAGATTGTTAAA 3818324 29 100.0 32 ............................. GAATTCTCGATGCGATCGCGCTGATCCTCAAC 3818385 29 96.6 32 ............................T CTAGCTTTTGTGCTATCGCCTCATCCTCTGTT 3818446 29 100.0 32 ............................. CTCTCGGCCCTGCCGACTACAGCTTACCCGAC 3818507 29 100.0 32 ............................. TCAGCGCAAACAGCCCGCCGGAGCCTATCCGG 3818568 29 100.0 32 ............................. TGGCTATCGGTGCCATCACGACCGGCAAAAAA 3818629 29 100.0 32 ............................. ACCTGAATAAAAAATACCCGGCGACCGAGGAG 3818690 29 100.0 32 ............................. TCATTCTGGACGCGGTGGCCGGGCAGGTTGGC 3818751 29 100.0 32 ............................. CCGCCAGTTTTTTTGTTTTTGGGGTTGGTTTT 3818812 29 100.0 32 ............................. TTAAATTTGCTGCTCATGATTTCATCGAGCAA 3818873 29 100.0 32 ............................. CGATCCAGGACAAATCTATTTGAATGTTCATT 3818934 29 100.0 34 ............................. TAATACGATTCTTGCCCCGCTTTAAACGACATGC 3818997 29 100.0 32 ............................. TTTTCGACCACTCAGGCAATGGGGCTTCTCAA 3819058 29 100.0 32 ............................. TGATCGAGCAGGCGTTTAAAAATTTGGGCGTG 3819119 29 100.0 32 ............................. CGTGACCCCGTATTCTTTGTATTTCTGCTTTA 3819180 29 100.0 32 ............................. TTTACGAATCATTACCGACGGTTCACCAGATC 3819241 29 100.0 32 ............................. ACGAAACGATTCGATCTTTTCGGGGAAATGCA 3819302 29 100.0 32 ............................. TCTATCCCGGCGTTCAAGTGATGATCGGGACC 3819363 29 100.0 32 ............................. ATAACAATAAATGTAACATTACTATCCTTACT 3819424 29 100.0 32 ............................. AAAAAAAGCGCGGCGAACTTAAACCGCGCGAG 3819485 29 100.0 32 ............................. ACATCATCACGGTTGAGGGGATCGAGTGGAGC 3819546 29 100.0 32 ............................. CCGGGTGAACGCTATGTAATCGGTGCTGACGT 3819607 29 100.0 32 ............................. TTTCTTTATGCGTTTCAGTAAAATCAGGAATT 3819668 29 100.0 32 ............................. CTATTGCTGCACGTCAAAAACAATTAGCCGAA 3819729 28 79.3 0 ..................TCA...-G..A | T [3819745] ========== ====== ====== ====== ============================= ======================================================================================= ================== 47 29 99.2 33 GCGTTCCCCACACCCGTGGGGATGAACCG # Left flank : CGAAGAAAACATCGAGCCGGCGATACCGAACCCGGAAAACATCGGCGACGTAGGGCACCGAAGTTAGCGCTAAACCATTCGCAATTCGAATTTCGGAGCATTCGTGTCAAATCCCTCCCGGAAAGTGCCGGGATAAGGGATCAAAAAACGAAATTAGAAGCGCGATAACAATATTTACTCACCACTCATCGAATCATCATGTTAGTCATAGTCGTTGAAAATGTACCGCCGAGACTGCGAGGTCGTTTAGCCGTTTGGCTCATCGAAATCCGAGCAGGCGTTTATGTCGGCGACTTATCGGTCAAAGTCCGCGAAATGATTTGGCAGCAAATCGAGGCCGGCATCGAAGACGGCAACGCCGTGATGGTTTGGTCGACCAACACCGAGTCCGGTTTCGATTTCATGACGTTAGGCAAAAACCGGCGTCTGCCGGTCGAGCTAGACGGTCTGAAACTCGTGTCTTTTTATCCTCTTGAAGACGATGAAGCCAAAGCTCTTTA # Right flank : AACAGAATTGAGCCAGTTTTGGCCATTTAAATTGAGCCACTTTTCCAGGGTTACGATGCTTGATTTAGCTTTGATTTGAGTCGATAACTTTCCCCTCCTAGCATAAAAATGTGTGAATGATGGATGATGCGGTCGACGATGGGTACGGCAACGTTGTCATCGATAAAAAACTCGCCCCAGTTGGTGAATTCCTTGTTGGTGGTCAGGATCACCGAGCGGTATTCGTACAGCGCGTTGATGAGTTGAAACAGGTTGTGCATGCCTTGTTTGTTCATCGGCAGGTAACCCAGTTCGTCGATGATCAGTACATCGAATTTGAGCAGTTGGTTGATTTTCTTTTTCAACTCGCCTTTGAGTTCGGCCAGTTCCAAGGCCTCCATCAAGCCTAGCGCGGTGTTGAAGCTGACCTTATAACCGGCATCGATGGCTTTCAGGCCGATGCCGATGGCCAGGTGGGTCTTGCCGACCCCGGGCGGTCCGATGAAGACCACATTGTCCCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //