Array 1 171279-173382 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNU01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171279 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171340 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171401 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171462 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171523 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171584 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171645 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171706 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171767 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171828 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171889 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171950 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172011 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172072 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172133 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172194 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172255 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172316 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172377 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172438 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172499 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172560 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172622 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172683 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172744 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172805 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172866 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172928 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172989 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 173050 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173111 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173172 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173233 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173294 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173355 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189890-191809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNU01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189890 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189951 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 190012 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190073 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190134 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190195 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190256 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190317 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190378 29 100.0 31 ............................. TGGCAACAACGTAGCTAAAGAGATCGGAGTC G [190405] 190439 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190500 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190561 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190622 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190683 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190744 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190805 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190866 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190927 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190988 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 191049 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191110 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191171 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191232 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191293 29 100.0 31 ............................. TGTGGTGGCCAATGGCAATTAATAACAGAAA G [191320] 191354 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191415 29 100.0 31 ............................. TGTGCGTGATGAGGTTCGCGGAGCATGTTCT G [191442] 191476 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191537 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191598 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191659 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191720 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191781 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GCTGGGTGTCCAGCGGACATCCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCAGCTTGCGGAAAAGATCCGCACTGCCTGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 192109-192626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNU01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192109 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192170 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192231 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192292 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192353 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192414 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192475 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192536 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192597 29 93.1 0 A...........T................ | A [192623] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGTGTCCAGCGGACATCCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //