Array 1 479737-476999 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900391.1 Desulfitobacterium hafniense TCP-A DeshafDRAFT_Scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 479736 33 100.0 34 ................................. TTGAAGCTGGTGCTTACGGGGTGGCAAAGGGCGT 479669 33 100.0 34 ................................. TATTTTAACGGCCTTGACTCGTTTTACATTTTCG 479602 33 100.0 33 ................................. CTTGATCCTCGAATTACTTCTCCATATAGGAGT 479536 33 100.0 33 ................................. TGTTAGCATCGCACTTCCTCCTTCGCCTTCCAG 479470 33 100.0 35 ................................. ATTGAAACAACAAAACCAATCCAAAATAATTATTA 479402 33 100.0 33 ................................. CATTGTTGATTTGAGCGATTAGATTATCATAAT 479336 33 100.0 35 ................................. CCTGACAAGCTAGAGTTTGACTATGATAATGGAAG 479268 33 100.0 33 ................................. TGCGTAGATGCTTCACAGTGGATGATTTGCAGA 479202 33 100.0 36 ................................. TTCGGCAACATTGTCAACGCCGCCCCATAACTCATA 479133 33 100.0 35 ................................. TGAAATATTTTCAGGAAGCTTCGCAAACCACTCTA 479065 33 100.0 33 ................................. TCAGGCATAGTCCCAGCAACCCCAATTTGTGTG 478999 33 100.0 37 ................................. CCTCCTGTAAATTATTGTAAATAAATGGGGAAAGACC 478929 33 100.0 34 ................................. TTGATACTCTTAGTATATCAAAGTGCTATACATA 478862 33 100.0 36 ................................. TCTACAGGACTAGCCAAGCTTGCTAAGACATTCGGC 478793 33 100.0 35 ................................. CCTACTATGGTGAACCCATAGGGGAGGTTTAAACA 478725 33 100.0 33 ................................. TTCGGCGTCAACCTGTCAAATGCACAGGGCCGC 478659 33 100.0 33 ................................. AACATGTCGGTCTTGAGCAGCCGCCCCTTTTTA 478593 33 100.0 34 ................................. TAGCCGGGAAGGCAGGAAAAAGCTATCTGAGCAG 478526 33 100.0 34 ................................. TGCGTCGGACTCACCGATCTTGCCGTTCAGGTAG 478459 33 100.0 36 ................................. TCGTGGCTCCAATACCACAGATCCACGATCATTTCC 478390 33 100.0 35 ................................. TTCTGCCGGAGTATCGGGAAGCGGGTCGCCGTCAC 478322 33 100.0 36 ................................. ATTTATTTCTCAATCCTAAGCAGCTCCCTCACCGTC 478253 33 100.0 34 ................................. CTCGTCATCAGGAAACAGAGAAAGTAATCCTTCC 478186 33 100.0 35 ................................. GCCTCGCCTTGGGCTGCTGTCATTCCTCTGAGCGG 478118 33 100.0 33 ................................. TCCCGCGTTATGGTGGATATGCAATTGGCCGTA 478052 33 100.0 35 ................................. TCTTTTTCAATAACTGGTTCCTCTTTTTGAGTAAC 477984 33 100.0 34 ................................. CACAAGGGATGCAGGCATTAACCGCAAACTTTCC 477917 33 100.0 35 ................................. ATCCCTCCTTTCGGTCGTAGATAGCCAAAACAATC 477849 33 100.0 35 ................................. TCTTCCAGGAAATCGCGAAACTCGACGGACTTTCG 477781 33 100.0 35 ................................. TGCCACGATGCAGAACGGGCATGCCCTTGGGCATC 477713 33 100.0 36 ................................. TTATACTCCTTTAGGCCACGTACGACCTCAGCCTCA 477644 33 100.0 36 ................................. TTCGGAAGTGTTTTTGAATGAGGGAGTCCGAAACTC 477575 33 100.0 36 ................................. CTGTTCCTTTGTGGCTATTGTCATTGTGGTGGCCTC 477506 33 100.0 34 ................................. ATTACGCTCGCCATGGTATTTTCGGAAATGGTAG 477439 33 100.0 37 ................................. TACGTTCAAGTCGTAGGTTTCCCACCAAAAAATCATG 477369 33 100.0 34 ................................. TATGCCATGCGCACAGAGCTTAACCGCCGCTATG 477302 33 100.0 37 ................................. CGTGCCAGCCAGCTTACCCAGCACTTTCGCGCGGGCC 477232 33 100.0 34 ................................. CCACCCCAGAACCTAATCAGCCTAGAATCGAAAT 477165 33 100.0 35 ................................. ACCTCGGTTATCAAAATACTTTATAGCGCCTTCGC 477097 33 100.0 33 ................................. CTTTGTCTGCCCCAAAGCTTGCGCTACCCCGCC 477031 33 93.9 0 .........................A..T.... | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 99.9 35 GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT # Left flank : TGGATGGATATCCGGCTTTTATGTGGAAGTAGGTGAGAGAGATTTTAGTGCTGATCACATATGATGTTAATACTCAAACCGCGGCAGGAAGAAAGAGGCTGCGTCAGGTTGCTAAGCAGTGTGTGAACTATGGACAACGTGTCCAGAATTCTGTCTTTGAATGTGTGCTGGATGCGGCAAAATTCCGTGAGGTTCAGCATAAGCTGGAGCAGATTATTGATACGGAGACGGATAGTCTGAGGTTCTATATGCTGGGGAATAATTACAAGAACAAGGTTGAGCATATTGGGGCAAAACCTTCGTTTAATGTTGAGGATACGTTGATTATTTAGTGCGAACCTTTAGTGCACAGCAAATCCTCGGGAGGTTCGCACCGTGAAACAAGAGGAAATTTGTTGAAATGTGTAGGTAAATAATGGGAGTGTGCTGTAGTGAGGGGAAGAAGTTTAAGGAAATGAACAAAAGTTGACTTTAGTAGATAGTTTTGATTACTTTTTGCA # Right flank : CGCCTAAGCTCTTGATCTGCGGTAAACACAAAACAGACCTCGTCTCCGCACCAAACGCACATAATCCGAACTGCTTACGACAGGTAAACCCTGTGGCGAAGAGTTCGGATTGTGTTATATCTCTGAAATATGTTAGAGGATGCCAGATAAAAGGCATCCTCTAACTTTCGCATTGCGATTATTACTGTATTTTATATTTTAAGGTTTTATAGACTGCCTGACCACATTCGGCCAAGGAACAAACTACAACAACAATAGCAGTAAAAACAACAAACAAGTTCGTTCCGCCCACTCCCATGAAGCCTAATGGGTCAAAGCCGCCCCAATCAACACTTTGCAGAAAGGCTGTAAACTCCGTGCTAAACAAATCCGGCCTATTTAGTAGATAGATCATTATGCACATGTTGATTATAGTGCTTATAACAACTGCACCGCAAACGATAGGCGTCCATCTGCGGACCTTGATTTTGAAAATACATGCGCCGACAGCTAATATAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 497744-494173 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900391.1 Desulfitobacterium hafniense TCP-A DeshafDRAFT_Scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 497743 33 100.0 33 ................................. TCCTACGTCAATGTATTTTCCTCCAGGGCCGAA 497677 33 100.0 34 ................................. CCTGGGGCTCTACTCACTTCTTCTTACCACTTGA 497610 33 100.0 35 ................................. TCCTACGTCAATGTATTTTCCTCCAGGGCCGAAGT 497542 33 100.0 36 ................................. GCCACAGCGCAACATTGAGTACATCGAAATACCAGG 497473 33 100.0 34 ................................. TTCTTCGATATGCGCCGCTTTGCAGTCGCTTAAG 497406 33 100.0 33 ................................. CGGCATAAGAGTTCGAGGCAGATTAAACATCTG 497340 33 100.0 33 ................................. CGCTCCATCCAGCGCGTCCTCGACTAACTTTTC 497274 33 100.0 35 ................................. TTGGATAGAGAGGAGGGGTGAGCGTGAAAAAAGTC 497206 33 100.0 34 ................................. CCTGGTAGGCCCGAAAAAAACGAAATGACGTTAT 497139 33 100.0 33 ................................. TATCCGGGAGCAATTCATAGGTTTTTTGGTTGC 497073 33 100.0 38 ................................. TTCTATTTTTTTTTACTTTTTACCGTTGCGCCAAGGCT 497002 33 100.0 35 ................................. ACTCCCCTGTTGGCCATGCCGGTATAGCTCACCAA 496934 33 100.0 35 ................................. TCCTACGTCAATGTATTTTCCTCCAGGGCCGAAGT 496866 33 100.0 34 ................................. CCTGGGGCTCTACTCACTTCTTCTTACCACTTGA 496799 33 100.0 35 ................................. TCCTACGTCAATGTATTTTCCTCCAGGGCCGAAGT 496731 33 100.0 36 ................................. GCCACAGCGCAACATTGAGTACATCGAAATACCAGG 496662 33 100.0 34 ................................. TTCTTCGATATGCGCCGCTTTGCAGTCGCTTAAG 496595 33 100.0 33 ................................. CGGCATAAGAGTTCGAGGCAGATTAAACATCTG 496529 33 100.0 33 ................................. CGCTCCATCCAGCGCGTCCTCGACTAACTTTTC 496463 33 100.0 35 ................................. TTGGATAGAGAGGAGGGGTGAGCGTGAAAAAAGTC 496395 33 100.0 34 ................................. CCTGGTAGGCCCGAAAAAAACGAAATGACGTTAT 496328 33 100.0 33 ................................. TATCCGGGAGCAATTCATAGGTTTTTTGGTTGC 496262 33 100.0 38 ................................. TTCTATTTTTTTTTACTTTTTACCGTTGCGCCAAGGCT 496191 33 100.0 36 ................................. TTCGCTGGGAGGAAGAGGAGGTCAATCGGCTGAAAG 496122 33 100.0 35 ................................. ACTTCAATTTCCCTATATCTCTTTTTCTGTCTCTC 496054 33 100.0 36 ................................. TACCATCTGCGAAAGTATCTCATGCAGAGAGCGGAT 495985 33 100.0 33 ................................. ACCTTAGAACATCTCTAACTGTTGTATGGGCTT 495919 33 100.0 34 ................................. TATAACTAATAATCAACCTCACATACCTGGGCAA 495852 33 100.0 34 ................................. ATACCTCAGTTTTTGAGATAATTCCTCATGCTCC 495785 33 100.0 35 ................................. TCCGGTATGCTTTACTCCGGGATAGCCGGTGTTTA 495717 33 100.0 33 ................................. ACTTCGGTCAAACAGGAAAAGCGATCCTTCGTG 495651 33 100.0 34 ................................. CTTCAAAAGAGTAATTTGTTTCTCAATTTCTTCT 495584 33 100.0 36 ................................. AGCGGATCAAGTGCACCGGTATTGCAGAAGCTTTCA 495515 33 100.0 34 ................................. AGCAAAGGTCATGTGCTCAAATTTGGTGTAGTAA 495448 33 100.0 38 ................................. CCATTGTGCTCCGTTGGAGTCTGCTTTCGCATCGGCTT 495377 33 100.0 38 ................................. ACAATCTGCAATTTAAGCAATATTGTTTTTACCCAAAA 495306 33 100.0 36 ................................. CGGAAGCTTATTTTCGAGGTCGTAGCCTGTGCCGCC 495237 33 100.0 35 ................................. AGCAAAAAATAAGGAGGCTCCAACGCGCATGTCTT 495169 33 100.0 36 ................................. CTCTCGCCCAGCATCCTCCTGATATACTCCACGCCC 495100 33 100.0 34 ................................. TCCTGAGAAGCACTATGTATGCCCATACTGCACA 495033 33 100.0 37 ................................. CCGATATAATTGTTATTAAATTTCTCTACTACAAGAG 494963 33 100.0 33 ................................. CATCTCAGACGACCTCCTTCAATCTCTCGATGC 494897 33 100.0 35 ................................. CCGCCCACCAGTATCAGTGCTATAGATAACTTTTT 494829 33 100.0 38 ................................. CGGAAGAGCACGGCCCCGCTCCCGAAGAACGGATCCAA 494758 33 100.0 36 ................................. CCCGCCAGATTTCTGCAAAGACCTTTTCCTTATCAG 494689 33 100.0 37 ................................. TTATCCTCTATGCTATATCCTTCAGCATCTTCTCAAG 494619 33 100.0 35 ................................. ATCTGCCCCTGCATTTACTGATAAACAAGCAGTTT 494551 33 100.0 36 ................................. AATCGCAGCTGAAAAGAGAAGAACTGAGATTCCTTT 494482 33 100.0 33 ................................. TCCTCGCATTGTAGGTAATCAAGTCGCAGCTCA 494416 33 100.0 40 ................................. CACTCATACACCACATGCCCGCTGCGGGCACCGGTCACCG 494343 33 97.0 35 ...............G................. AAGGCCATTAACGCGAGTGGAAAGCTTACGGATTA 494275 33 93.9 37 ............G........A........... AACGTGTTAGGAACTAATGGGCGCTTTGCTCTTAATC 494205 33 97.0 0 ....A............................ | ========== ====== ====== ====== ================================= ======================================== ================== 53 33 99.8 35 GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Left flank : TCGTATGAGGAGTGTGGATTGAAATTACCATCTGCGAAAGTATCTCATGCAGAGAGCGGATGTCACTCCTCGTATGAGGAGTGTGGATTGAAATACCTTAGAACATCTCTAACTGTTGTATGGGCTTGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTATAACTAATAATCAACCTCACATACCTGGGCAAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATATACCTCAGTTTTTGAGATAATTCCTCATGCTCCGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTCCGGTATGCTTTACTCCGGGATAGCCGGTGTTTAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATACTTCGGTCAAACAGGAAAAGCGATCCTTCGTGGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : AAATAGGAGGGACTATTTCAACTGGTCCCTTGATTTCTAATACAAAGCCGGCCTGGGATCCCCAGGTCGGCTTTGTATTACATAGCTATTTTTGATTCCAATATTTCTATTCTTCTACGAAGCTCATTTATTTCAGTCTTATCGTCTCTCAGTTCCTTAACTGCTTGCCAAGTCATCTCCTGCTTAGCGGAGATTTCATCCAACTTATCAAGTTTTTTATATGTTTCTCGATTGTCAGCCTTCAATGCTTTGATATCGGATTCAATCCGGTCAAGAATATTCAGCCTTTCAAGGATAATATCCAACTTGTCCATTGCTTATCCCTCCTGAGTTTTATAGTACCACAGTGATATTTGTAATACAATGCTTGGAGCTGCCGTTGGCTGAATGGATTAAGATACATTTTTAAAATCCTTGCGCAAGCTCTAAGAGGGTCATTTAAGCTACGTTGCTCCCTGTGAGAGAGCGTGAATTACTTAAGAAATAGATTTCTATTGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 500013-497882 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900391.1 Desulfitobacterium hafniense TCP-A DeshafDRAFT_Scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 500012 33 100.0 36 ................................. CTAAGAATGATGGAATAAATGTCTTTCTTCACTTCG 499943 33 100.0 33 ................................. TTCAATATGACGATGCTAAAAAATATCACCGAT 499877 33 100.0 35 ................................. CAATGGCTCAATACTTGATACTTATCCCTTATAAG 499809 33 100.0 32 ................................. TATTTCATCGTGGTGGCCTCCTTACGATAAAG 499744 33 100.0 35 ................................. TTTTGAACTTCGATGAAAATCTGAGTTTATAAAAT 499676 33 100.0 35 ................................. CCTGGAAGCAACTCCAGATAAATGGGGCTATAACA 499608 33 100.0 33 ................................. GGTCCTTGTGCCGTTATTTCTTCCCTGAGGTAG 499542 33 100.0 34 ................................. GAATCAAAGGTCATCTGGAAGCAGAAAGCCTGCA 499475 33 100.0 33 ................................. AGTTAAGTGGTACTGGGAGTATGACATGATTTT 499409 33 100.0 35 ................................. GGTAAGGTCGTTAATCAAGATCCGTTTTCCGTCAG 499341 33 100.0 33 ................................. GCTTGTCAATTAGCAGGACTTCTATGCCGTCGA 499275 33 100.0 35 ................................. CACGATATCCGATGTCGGATTGCTGGTTTCATTAA 499207 33 100.0 34 ................................. CCTTCGTATTGGTTTAATTTACTAGGCTTTGACT 499140 33 100.0 35 ................................. ACATTGTAGTTCAAGCTTACTCGATTCTCTCTCTC 499072 33 100.0 32 ................................. TACCCTATTCCAACGTAAAATATCGCTCATAC 499007 33 100.0 37 ................................. CTCTACGCCTCGCATAAAGCTGTCTACACCCTCTTTG 498937 33 100.0 34 ................................. TAAGCGGACGTTTGGGGGCCAACATAACCAATCT 498870 33 100.0 37 ................................. CAGGCAAGTAACACTGATAAGGTCATAGTCCAGGTTG 498800 33 100.0 36 ................................. TTTCGAGGAAAACATCACTGGTTACTTTACCGAAGT 498731 33 100.0 35 ................................. ACCATCTCAAGCAGGAGCCAGTAGGAGATGCCCAG 498663 33 100.0 36 ................................. TGCAAAATATTTTGGTAGCGGTTCCAGGGAAATGCA 498594 33 100.0 35 ................................. GTCATACAAGCCTGCGTCAACCAGCTTCTCCAACA 498526 33 100.0 34 ................................. ACTTTAGGGTGTGGGTAATTCCCGATATATGGGC 498459 33 100.0 38 ................................. TTCTATTTTTTTTTACTTTTTACCGTTGCGCCAAGGCT 498388 33 100.0 36 ................................. TTCGCTGGGAGGAAGAGGAGGTCAATCGGCTGAAAG 498319 33 100.0 35 ................................. ACTTCAATTTCCCTATATCTCTTTTTCTGTCTCTC 498251 33 100.0 36 ................................. TACCATCTGCGAAAGTATCTCATGCAGAGAGCGGAT 498182 33 100.0 33 ................................. ACCTTAGAACATCTCTAACTGTTGTATGGGCTT 498116 33 100.0 34 ................................. TATAACTAATAATCAACCTCACATACCTGGGCAA 498049 33 100.0 34 ................................. ATACCTCAGTTTTTGAGATAATTCCTCATGCTCC 497982 33 100.0 35 ................................. TCCGGTATGCTTTACTCCGGGATAGCCGGTGTTTA 497914 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 32 33 100.0 35 GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Left flank : TATCCTTTGCAAACCAACTCTAAGAAATGCGCCTTTGGTCATTTTTATCACTCCATGGATGTTTCCGGAACGGTTTTGGAAGATGCCTGGCAGGCCATCGATCAGGTCCATGACGAATTTCATACCAGCGGCAGTAAGGTCATCGAGGCTGTCAAAGAAAATAAACCGGAATTGGCCAGGAATCTGTTTTTACATACGAAGGAACTTTCCCAGAATATTTTTGTTAAATTGGACGAAGTCACTCATATCATCGAAGGCAGCGCCGCTCAAGGAGTGGAGATCCTGAGAACCAGTAAGGCGAGTTGAACACAATCCTTTTGCCGCTCATCCGGTGCGAACCTGTAGTGAACATGAAAATGATGGGGGGTTCGCACCGCGAAATATGAGGGAAATTGTTGTAATATGGAGATTGTAGTAGGTCTGGCTTTGGTTGTTGGTAGAAAAGTTTTGAAAAGTAAACAAAAATGAACCTGTTGGGTGATTTTTGTTTACTTTTTGCT # Right flank : ACTTCGGTCAAACAGGAAAAGCGATCCTTCGTGGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTCCTACGTCAATGTATTTTCCTCCAGGGCCGAAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATCCTGGGGCTCTACTCACTTCTTCTTACCACTTGAGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTCCTACGTCAATGTATTTTCCTCCAGGGCCGAAGTGTCACTCCTCGTATGAGGAGTGTGGATTGAAATGCCACAGCGCAACATTGAGTACATCGAAATACCAGGGTCACTCCTCGTATGAGGAGTGTGGATTGAAATTTCTTCGATATGCGCCGCTTTGCAGTCGCTTAAGGTCACTCCTCGTATGAGGAGTGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 2452705-2453071 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900390.1 Desulfitobacterium hafniense TCP-A DeshafDRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2452705 30 100.0 37 .............................. TGCGGTTCAGAGGTTGTGAAGCTCGAAGGCAAATCGG 2452772 30 100.0 38 .............................. CAAATCGAATCGAGGAAGTGGAGCTGGGTAGTTTTAAG 2452840 30 100.0 39 .............................. GCCAGTTTTTAAGGTTGCGGCATTCATAAATTTCCCCGC 2452909 30 100.0 36 .............................. TAATAGATGGACCAGGTTCCTTTACCTATGGACACC 2452975 30 96.7 38 ........T..................... CCGGGCTTTGTGCGGTCCATCCTGTACCGCCTGGACGA 2453043 29 90.0 0 ...............-.A...A........ | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 97.8 38 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : GCCGAAAGAGCTGCTTCAATTGGCCGTCGATGGAGGAATAGGAAGTAAGAACAGCCAGGGGTTCGGGTGTGTGGAGATTATCAATGGATAGTAAACGTCGTCGCTGGGTCTGTCCGAAATAGGTACGCGCGTACCGATTTCAGACGGACCTTTTCCTGGCAAAGTGATACTGGAGTTTAGTATTAAAGAGTTTTACCTTTTTCAACAATCCCAGAATTTCGATTTTGATCTAATCCCTTCCTGTGCTAATATTAGCATGAGAGATAGGGCTGATTTCGTTTTAGATAAACTAGCCGGTTTATTACTTCTACCACTAGATTAGGGGGAGGATAAAAGGCTAAGTTTTAATCGTAGCTCTTGTCGTCGATGTGCAATAAGGTAAAAATGCCCGGGGATCGACGACAAAGAATATGGCTAAATAAGCGGGCTAAGAAGAGAAGTGCTGATTTGGTTAATTTTGGTCAATGGCTGTAATGGCTTATTTAATGCTGGTGAAATGG # Right flank : CCGGCACTGAGTGAGTTTCCAAAGCAAATCTATAGGAAGTTATTAGCTTACCTATAATATCTTTTCTCGATAAAACAGACACTCCAGAGTTAGAGATTCTCTCAGAATCGCAAGATTGCTTCTTTTTTCATCTCAGGTAAATACTCTAAGCTACTCTCTCAGGGGCCAGCCCCTGAAACCCCGCCCCCGTCGGGTGGCAGAAGAACGGTCTTTAAACTGTTCTGAGGCATAAGGGTCTTGGTCATGTTAGCCAATCAAGGGCAAGGACTTCGTCTCGGCTGACGCCGCCCCTTGACAGGCATCTACCGAGTTGATAATCAGCATCACAGATAAATTTTTCCCGGCAATGGTGTCAGGTGTGACAACATTGCCGGGAAATTCTATATTAAGGGATTAAATATGGAGAATAAAAGCAGGCTATGATATACTGTTTCCATACAATGGATATTGAGGCCGATAGTGATAGTTTCATAACGGAGGATGATCACGATGTCAATGGA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 2458291-2458792 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900390.1 Desulfitobacterium hafniense TCP-A DeshafDRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2458291 30 100.0 40 .............................. ATTTACACTCACGGCATTTACACATCTTTATTTCCCTCCA 2458361 30 100.0 38 .............................. TCAGAGAGGAATCCGGATGTACACCAGTTCGTGATGAA 2458429 30 100.0 36 .............................. GTGCCAAAGTATTTGATTTTGCCCTGCGAGAAGTCA 2458495 30 100.0 36 .............................. CTCCCATTTTGGTTCCGTCTTTGCATTGCTCTGTCC 2458561 30 100.0 38 .............................. ACCATCAACTGGATGCCGATAGTACGTTTCCCTACTCT 2458629 30 100.0 35 .............................. AGGAACGGCCATAGCACCATAGAGACACATACCCG 2458694 30 93.3 37 ........T............A........ GAAATCAACTCGTCCATTCTCGACAGAACATCCTCGG 2458761 30 83.3 0 ...............G..G..A..A....T | T,G [2458782,2458789] ========== ====== ====== ====== ============================== ======================================== ================== 8 30 97.1 37 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : TGACTAAGCCGATACTCTATAGGGTCTACCCGGAAGTATCCTATCCGGTGGCGGAGGGAAAGGAAATTGAGATGAGGACAGTTGTACCTACGGCTCTTATCCGGGAGATCGTTCTCAAGGCGGATCGCTATTATTGCCGGGCAGGTGGGTATTTGTATGAGTATAAAGGGCAGCGGACCTTTGAGAAATCAGTGGATTTCCTTTATGAGAAAGACGGGAAGCCTATTGCGTTTATCCCTAAAAGTGATGGCCTGGATTCGCCTTTGGATCTCAGAGTGGCGCAGTTCGGAGAGGACTTGGTATGTCTTGTTTAATGGCCTTGGCTTAATGGGCGGAGATTATTTTGCTATATGAAATTGTCGTCGGTGTGCAGTAAGGTAAAAATGCCGGGAGACCGACGACAAGAACTATGGCTTAACAAGCGGTTTGTGGGGGAAAACGCGGATTCTCTGGGCTGAACTTGTTAAGCCATAAATGCTGATTTTATGCGGGTAAAATGG # Right flank : TGACAAGGATGGGATTGCCCTAATGCCATGCGGTGGCCCTTCCAGGATGATAAAAGATGCACATTGGATATCAGAACTCAAGATACTGGGCATCACAACTGATTTTCAGAGAGGGGAGCATAAATGCTAAGGTTAACAGAGAAAAGCTTAGATTGGGCATTATTGCATATTGAGAAATATGGAGATACTGATATTTTCCCAATGCCATTTGAATTTGAAGCCATTCGTTATAGCTGGGAACAAGTTATTCGGCCCTGGTTAAGGAGTCAAGATATACTTCAGTGGATGCCAAGACCGTATAGAAGATGTCTGACCCCAAAGCATAGATATGGATTTCGCATAGCAACTCAACTGGACCCATTGGAAGCTATTGTTTTTACCTCCTTAGTAATGGAAATCGGTAAGGATATAGAATCAGCCCGAATCTCCAAAGAGCAGAATATCGCATTTTCCCATAGGTTTGCTCCAGAAGAAAGTGGCAGAATGTATGATACTGACTA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 2461498-2462124 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900390.1 Desulfitobacterium hafniense TCP-A DeshafDRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2461498 30 100.0 36 .............................. CCCCCTTACGCTCTTTGATTGGGCGGCCGCTCTCAT 2461564 30 100.0 36 .............................. CGGCCATAGACGGGCGGTTGCAGGTACGGACATATG 2461630 30 100.0 34 .............................. GTCTCCAAATCTCTCTTCACCTTTTCCAAGCTCC 2461694 30 100.0 35 .............................. CGAATTACGCCATGATGCTCGCAGATAATGCGAAA 2461759 30 100.0 35 .............................. AGAGAATTAGGAGAGGCAGTCATTGCCAAGAGACA 2461824 30 100.0 40 .............................. TTGAGTACGAAGATACCGTGTACTGTCCAAGCTTTTTTGA 2461894 30 96.7 36 .....................G........ AATCCTCCTGAGCCGGTGAACCAGACGATGATCTCA 2461960 30 96.7 36 .................G............ CTGCACCACCCCGAAGAAGAATAGCAACGCAATCAG G [2461981] 2462027 30 100.0 38 .............................. CCAGAGTAGGTATTTATATATGCTTCAACATCCTCCTC 2462095 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 99.0 36 GTTGTTAGCTTACCTATAAGGAATTGAAAC # Left flank : GTTGCATGGGATAAATTCAGCCTTGATGAAAAGGCTGTGAAATTTTCAAAGTATATGGCGGAGCCCTGGAAGATACATTGCTTTCGAGAAGGGAATACAAGAACTGTAGTGACCTTTTGCTGTCAATTTGCAGAGAGCAGAGGATTCAATGTAGATAGAACACTATTTCAAAAACATAGTGCTTATGTAAGAACGTCATTAGTGGCAGCATCAGCTATTTTTCGGATCTAGGAGATAGAGCGCAGCCTGAATACCTGATTAGAATTGTTAGGGACAGTATCGAAAGAGGACAGAGGAAAGCTTATCAGAGGAACGTTTAATTATAAGACAAGAAAGAGCATAAGCGTTACATTGAAGTTGTCGTCGATGTGCAGTAAGGTAAAAATCCCCGGGGATCGACGACAAAGAATGGGGCTTGATAAGCGGACTAAAGAGAAAATGGCTGATTTGGTTAATCTTGGTCAATGGCTGTAATGGCTTATTTAATGCGAGCGAAATGG # Right flank : TATGAACTTGGTAGGGCTTTGTTTGATGTTCGTTATCTTGAAAAAAGTTTCAAGACCCTTGATAATTCCCTTAAGGCCTGTGAGCAGAGTTTAAAGAATATATGTAATACATTTCGCTGGCTGCAGCTCCTGGCATTGTATTACATATATCCTTGTGGTAACATAAAAATTAGGAGGGATAAGGCATGGATGATAAATTAGATTTGATTTTAGACAGATTAACGGCAATGGATAGGGGCTTAAAAGCTGAGATAGGTTCTTTAAAATCTGAGATAGGTTCTTTAAAATCTGAAACTCAGGCGATTAGTGAAAAAGTGGATATGACATGGAGAGCCATTCAGGAATTAAGGGATGATAAAACTGAGTTGAACGAACTTCGTAAGAGAATAGAAATTTTAGAATCAAAATTAGCAATGTAATACATACCCAGATGGCAGCTCCGCGGTCGGCTTTGCCCGGGGATGGAGGCGAAACATCGGTATAAATCTGACAATATAAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 2467744-2469692 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900390.1 Desulfitobacterium hafniense TCP-A DeshafDRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2467744 30 96.7 37 .....................A........ AGAATTTCTCCCTCGCCTACTTCGTCACCGGGTTCAA 2467811 30 96.7 35 .....................A........ TGGCTCTTCCGGGTTTTTACGGTATCCCAGCGTAG 2467876 30 96.7 37 .....................A........ CTATTTACTCCTACCGCCTTTCCTTCGCTAAAGCCGG 2467943 30 100.0 34 .............................. ATTATAAAATATTTGAAATAACCCCTAGTCGCTT 2468007 30 100.0 35 .............................. TAGAAGTGCCAGCTTTATAAGCTTGTGGCAATACA 2468072 30 100.0 35 .............................. CTCACAATCTGCAAAGATATAGTTAATAAGCCCAT 2468137 30 100.0 37 .............................. ATAGCCTTTTTATGGGTAGTTACACTGAAAGAACCAC 2468204 30 100.0 38 .............................. TTTATACTGATGGATATGTTACTACTGGTAATAGGTGG 2468272 30 100.0 36 .............................. CGTGGCCGACCAGGCGGGCTATTTCCAGCGGATTGG 2468338 30 100.0 36 .............................. TACGGCTGCTTTTTTATACTCAAAACGAAAAGAGCC 2468404 30 100.0 36 .............................. CGCTTACAGGGCTATATTAAAAAGCTGGCCAGCGAT 2468470 30 100.0 36 .............................. TGGTATACTAGGGCCGATATATATTGCTTTTTGGTC 2468536 30 100.0 36 .............................. TACCCATGTTGCCGCTGTGGCTGTAGGGGCTATGGA 2468602 30 100.0 37 .............................. TTCAGCAGCCTCCATCATTGCTATGGCAGCTGACGAA 2468669 30 100.0 37 .............................. GCAATGGCGGTATGGTAACCCTAGAACGTAGTAAGGA 2468736 30 100.0 35 .............................. TACTGCCGAAGAAGCTGCAAAGATACGCGAATTGA 2468801 30 100.0 35 .............................. CTGTCAAATGCTCGTATCTCGGTATTTTCGGCCAA 2468866 30 100.0 37 .............................. GAGTCGAAGCTAAGCAAAAAGGATTAAAATGCCGGAT 2468933 30 100.0 36 .............................. ACGTGCGGTTTCGCTGGGACTCAATGGACTTGGAGA 2468999 30 100.0 36 .............................. CGCTTATCATGGAGCAAACAGCCGCTGCACAGGGAC 2469065 30 100.0 39 .............................. CCATCGAAACGTCCTTTGCCGCGGAATGCGGTTTGGTCC 2469134 30 100.0 35 .............................. CAATTACAGAACCAGCGGGGGAATAATGGCTTTCA 2469199 30 100.0 37 .............................. AGGAGTTGGAGTTGACCTGCGAGAGGGTGATCGGCAA 2469266 30 100.0 35 .............................. TGTAATGACCCAACGTATCATAATAGTAACAGAAC 2469331 30 100.0 36 .............................. AATTTATTTTGGCCCTGAGCTTCTTCTGAGAATAAG 2469397 30 100.0 37 .............................. TGCTGCTTCTGGTACCGATAAGGTTCAAATTTATGGA 2469464 30 100.0 38 .............................. GCGGAGCTCGTTCCTTCAGCATTCGTCCACGCCTTCTC 2469532 30 96.7 35 .................G............ TCCTCTGTCATGCCCCAAAGCTCAGCAGCTTCAGG 2469597 30 96.7 36 .................G............ TCTGAGAATCTTTTCTTTGCTTTCTGGAATAACCAC 2469663 30 93.3 0 ............T...............G. | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.2 36 GTTGTTAGCTTACCTATAAGGGATTGAAAC # Left flank : AGCACACTATCGAAAAGAGGGTATGCAGCGGTTTTTGAAAGGGCTAGATAATAAATTTGGGGGAGAGAAAATTGGGAAGATGAGGTATAATTATGTTTGTGATCTTAGTCTATGATATGGGGGAGAAGCGGGTAGCCAAAGCACTGAAACGGTGCAGAAAGTACCTGAACTGGGTGCAGAATTCTGTCTTTGAGGGAGAGATTTCGGAAAGCAATCTGGCAAAGCTGAAGATGGAACTGGACAGGATTATAGTGCCTGAAGAAGATTCGGTTATTATTTATACACTGAGGACGACCCGCTATTCTGAGCGGGAGATCATGGGTTTGCGAAAAGGAGGCCAGAATTTAATCATATGAAATTGTCGTCGATGTACAGTAAGGTAAAAATCCCTGGAGATCGACGACAAGGAATGTCGCTTAGTAAGCGGCCTGCAGAGAATAGTGAAATTTTTGAGACGGCTCAAGGGAGCTGTAGCTGTTGATTTTATGCGGGTAAAATGG # Right flank : CCAATCAGATTAAGAAGAAGCAGGAACGGCTTAGCGAGATTAGAGCTTCTGAGAAGAGTCTAAAAATATATGTACATCATATCGGCGGCAGTTCCTGGCATTGTATTACAATATTCGGTATGGTAACACAAAAGTTGGGAGGGATATCATGATAAGTTAGATATTATTTTGGAGAAGTTAGAAAAGTTGGAAGCTGGACAAGAAAAGCTAAAAGCCGGACAGAAGGAGATACAAGCCAATCTTGACAGATTGGAAATTGATGTTCTATCATTGCGGATGGATAATAAATCTATACATCGAAAACTTGATGTGATTGCGTCGGCGGGAGTTGTTGTCCAGGAAGAGATCGCAATGCCAAAGGCTCAATAAAATATCTAATACAGGAAAGATTAATTATGTAGAGGAAAGAGTCTGTCCGAAATAAGTACGCGCGTACCTATTTCGGACAGACTCTTACTTGGTGAAAAAGTAAAAAATTGTAACAGTGAAACCAACGTGAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //