Array 1 54406-52098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMGA010000020.1 Vibrio cholerae strain Vc3022 NODE_20_length_71786_cov_121.131504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54405 28 100.0 32 ............................ TTTAGTGTTGAGCACTAGTAAACCCGTTTTCC 54345 28 100.0 32 ............................ GTCACAATGTGGCGGTATAATTCTTGATGAAG 54285 28 100.0 32 ............................ AATTGCTGCATTCACAACACACTACGGCACTT 54225 28 100.0 32 ............................ AATCCCGATGCCGAGTTTGAGTCTTATAAGCG 54165 28 100.0 32 ............................ ATTCTGGGGCTTTCTTTCGAGAGTGGTAGACA 54105 28 100.0 32 ............................ CCAGCCAGAATTAGGTGAAACACGGTTAAATT 54045 28 100.0 32 ............................ TAATCGGAGCAATCCTAACTGGCGCAGTCGCC 53985 28 100.0 32 ............................ ATGCCAACGCCCTTCATCGGCAGAGCGCAGCA 53925 28 100.0 32 ............................ ACGATTTGATTTCGTTAATGCTAATGTGCTTC 53865 28 100.0 32 ............................ TTAACGCTAAACGCAACGTTTCTTCTGAACCG 53805 28 100.0 32 ............................ CACCGCGCTTTTTGCCCCTTTTGTGGCTTCAA 53745 28 100.0 32 ............................ CGACGAAGCAAGCAACGCGATCACAGAGTTTG 53685 28 100.0 32 ............................ AATAAACACGCCAAACGATGCGCCGATAGCCT 53625 28 100.0 32 ............................ CATACACGATGGTTAAGTGGATGGCTCAAGGT 53565 28 100.0 33 ............................ GGGTCTAATCGCTTGCAGTGAACAACGTGCTCA 53504 28 100.0 32 ............................ GTACTCTAAAAGTTAATATTCGTCGGCGTTGC 53444 28 100.0 32 ............................ CGCAGGCAGCACCAGCCCTTACCAAACCAAAA 53384 28 100.0 32 ............................ CGCGCAGACGTACTTAATTTTTATCACCTCGA 53324 28 100.0 32 ............................ ATCCTCAGCCCACCAGTTGCGTTGCTGCTCAG 53264 28 100.0 32 ............................ ATTTGTATCTCCTATCGTTAAACTTCCAATAA 53204 28 100.0 32 ............................ CGACGTGGTGCTGACTGACGTTACGTTATCCA 53144 28 100.0 32 ............................ ATAAACGGAGCAGCTTTCTCGGCTAGAGCATC 53084 28 100.0 31 ............................ TTTGGGAAAAGCTCCCGCTTGGCTTTTTTAA 53025 28 100.0 32 ............................ TTAGTTCTGCTCTAACATGGCCTCGATGCCAG 52965 28 100.0 32 ............................ TGTCGGCTTGTCGGATTTGCACCGTCTAATTT 52905 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 52845 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 52785 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 52725 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 52665 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 52605 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 52545 28 100.0 32 ............................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 52485 28 96.4 32 ...........T................ GACATCCGAGAGTCTATTGCCGAGTGGCGCAC 52425 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 52365 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 52305 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 52245 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 52185 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 52125 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 39 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 167487-167813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMGA010000007.1 Vibrio cholerae strain Vc3022 NODE_7_length_200370_cov_114.647461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 167487 28 100.0 32 ............................ AATAAGGTTTAATCTCTCGATACTCTTCGGTT 167547 28 100.0 32 ............................ CCGCGAAGATGCGAAGCTTGAAGCGCGCTTGC 167607 28 100.0 32 ............................ ATCAGGCTGGCAACGCTGGCTTGGTAGTTCGC 167667 28 100.0 32 ............................ TTAATGAACTCAGCTTGTGCGCCTCTGTGCGT 167727 28 100.0 32 ............................ TTCAAATTGTCACCATTTTGAAGAAGCCATGA 167787 27 85.7 0 .............T......A.-T.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACCGCCGCACAGGCAGCTGATAAT # Left flank : TTCTGAAATGACAGCGCTTGGATACCTAAACATATCGCAGTCAAAATCGGTTCCTGAACAATACAATTTGGCTGTTTTCCGGCGCAATCAAAAAATCGACCAAGCGACACCGAATGGACAAAGAATCAGAGCCGAACGTTTGGCTAAACGAGCTATGAATAGAGGCGATTCACCGATTCGGTTTACCCCAGAAGACCTCGTATTCGAACATTATCATTCTATACCGATAACAAGTACCCGTAGTGGCAAATCATTCAGGCTAAATTTGCAATATCAACGACTAGATACAGTTCCAGATGGACAATGGGCATTTTCAAGTTATGGGTTAGCAAATCAAGAGCTTGAAAGTAGTCCTGTTCCCGTAATTTGACCAATTTAATATTCATACTCGATAGACATCTGATTTGTAAACAAAAAAATTAACCATTAAAATAAAAGGTATTATTTTTCTTTACCGATTAACAGATTGATAAACATACACTATATTGAAATTGACCATT # Right flank : TTCACAAATAGCCTTTTAAAGGCTATTTGATTTCAGCATTAATAAGGATTATAATCCTCATTAATGCTGAAAAAGTATTTGATAAAAAACGTACCACGTTCATTCGAGTTCAAGATCAGACACTGCTGAATAAGTAGATATTAGGAAGATTGTGATTAGTGTTAAAAATAGTGGGATCAGAACCTAAAACAGATCTCACTATTTAGTCGAACCGCTACCGATATTTTAAGGTAACAAGTCTCGAACATCACACCGGAGAACTTCAGCTATTTGATAGGCCTTTTCGAGTGTGATGTTCACTTCTCCCCTTTCGATACGACCAACATAACTGCGATCGATATCTGCAGATAGAGCAAGTTTGTCTTGAGAAATACCTTTGTCTTTACGCATCGAACGGACATTGTGTCCAAATTTTTTCGCTAAGTCTTTCATTTCCAATACACATTAAAAAGAAAGACTATCCGTTCTTGATGCATACATTACCACGGACTATAATCCGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCAGCTGATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //