Array 1 165942-164653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIID010000011.1 Escherichia coli strain PBIO872, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165941 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 165881 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 165821 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 165761 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 165701 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 165640 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 165580 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 165520 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 165460 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 165400 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 165340 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 165280 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 165220 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 165160 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 165100 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 165040 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 164980 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 164920 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 164860 28 100.0 32 ............................ GTAAACGGAATTAGCAGCAGCATGATCAAAGA 164800 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 164740 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 164680 27 92.9 0 .......................C-... | T [164661] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAATACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 175568-174998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIID010000011.1 Escherichia coli strain PBIO872, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 175567 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 175507 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 175447 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 175387 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 175327 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 175267 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 175207 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 175147 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 175087 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 175027 28 85.7 0 ....................T...C.CT | C,A [175001,175004] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //