Array 1 219629-220414 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYUJ01000016.1 Pediococcus acidilactici strain SRCM100320 contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================================================== ================== 219629 35 100.0 31 ................................... TAATTTAGAGCTGTATTTGAATAAGCACCCT 219695 35 100.0 31 ................................... TAGCATGTCGGCACTCGTCCCGCCTACCCGT 219761 35 100.0 31 ................................... CGTCTGGGGTTAAGATTGCGACTGTGTCGCA 219827 35 100.0 31 ................................... CATAACCTACCTCCGATACGTGTTAATCATT 219893 35 100.0 31 ................................... CGTTCCCACATGAGTGATTACTGGAATGCGC 219959 35 100.0 31 ................................... CGTTCAGTGTTGAGATTGTAGGAAATTGTTA 220025 35 100.0 31 ................................... CCAATATTAATATCTTCAATCCAATTGGACT 220091 35 100.0 31 ................................... CTTGCAATCGGAAAAGCAGCAGGTATTCCAG 220157 35 100.0 31 ................................... CACGATTTACCGTTTTAGGAATGATTTAGAT 220223 34 82.9 123 .......-..A...................GGC.A TGAAAAAAAGGGGAGTTTAATAATTAATGCTCATAGAGTTTAAATTTGGTATAATGCGAAATGGAATTTGAGAATGATTTGGTATTGGCGATTTACTCACAATAAAAATAAGTTGCTTTTATT 220380 35 94.3 0 .................................CG | ========== ====== ====== ====== =================================== =========================================================================================================================== ================== 11 35 97.9 40 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT # Left flank : CCAGGACTTAGTTATTCAAAAATATTTAACTAAGATTGAACGAGTTTTTGCCGAAGGGTTGGTGGATGAGCAACGTAACCAAATTCATGATCAGGTAAACCAACTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGGTAACCCATATGGTATAATTGAAGCGATTTTGAAGACTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTGACAGCGACCAAAATTGAAGAACTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATTGAATTCACAGAAATAGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : GTAGAGCTAAAAATCTTAGCTCAACGAAAAACGAAAACTCCTATAAGTTAATGATTACTTTAACTTATAGGAGCTTTTTGTAGTTAGAGAAGGATGTTAAATAATTGAATAATGCGTCTTATTGCGAGAGACAATAAACATTATTTAAAATTGAATACGAGAGTAACGTTAATTTTTGAACAGCTCTCAAAAAAGAAGAGTAGAAAGATAAGTTTGTTTGTAAAATTAAAGTTAAGCTTTTTTCTCATAATTTATGACTTCCTTTGTATTTGTTTTATAAATTTATAATAAAAGCAAAATTTCATTTTATCAAAATCATCAACAATTTTCGAAATTATTATACCCCATAAACTTAGAAATCACAATAAAATAAGTACAGCGACCTTATATTTTATCCAGTAGAACACATTAAATAACTGATATAAAGAAAAAACTACAGACAACAAAAACAGCCCAACCGAATCCCAATCCAGTCAGACCGTCTTAAATTTCCTACATCA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.82, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //