Array 1 19469-18054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054694.1 Nostoc edaphicum CCNP1411 plasmid pNe_2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 19468 35 100.0 39 ................................... CTTGTGGCTTACGCTGTCCATTTGCACCCAGTTGGAACT 19394 35 100.0 37 ................................... GGTAATTCCGCTAGCGGATTTTTACGCCGGGGCAATA 19322 35 100.0 36 ................................... CGTTAACGTTCCCTCCTTGGATGTTGCCAGGAGCAA 19251 35 100.0 35 ................................... TTTACTGCGCCAACTTCTACCGAAACTTCATAACT 19181 35 100.0 37 ................................... TATTTGCTCTCTTGTGGAGAGCATAGATATGGAGCAG 19109 35 100.0 38 ................................... TACAAATTTATAATAGCTGTCAGGGACGGATTGATACG 19036 35 100.0 40 ................................... TTGTCTTTTGTACTCTTGGAAAAGTAGATAAGACACAGCA 18961 35 100.0 39 ................................... CTACTGTTAATTCTAGCTCATCCCAAATCTCCAAGAATG 18887 35 100.0 41 ................................... TACTTCCCCATGACGCTGGAACATAAGTCCCATCAACTCAT 18811 35 100.0 40 ................................... ACAATGCTTCCATAAGCAAAGGCTATTAGCAAAGTTTTTG 18736 35 100.0 37 ................................... ATTAATTCAGTTCTACTGTAACTATGCAAAAGTAGCA 18664 35 100.0 35 ................................... TCGCATTCGAGTTCCAATCACAAAGAGCGTGAGTG 18594 35 100.0 35 ................................... ACGATCATTGTGTGCAGCAAGGTTTGCTGTTGAGT 18524 35 100.0 35 ................................... TTTTTTCATCCACTCTAGAATCTTGGTAGCGCCTT 18454 35 100.0 40 ................................... AACGGTTCATACCCGTTGCGGGGTATGAGTGGAAGATTTG 18379 35 100.0 40 ................................... CTTTCCCACTCATTCCTATTTTTTTCTAAATAGAAAACAA 18304 35 100.0 36 ................................... CTGAATAAATGTATCCAATTGCCGCACAGATGACAG 18233 35 100.0 36 ................................... GAGAATCCTTTGCTGCTTGTCAAGGTGACGTGAACC 18162 35 100.0 39 ................................... CGGCATCAGGACGTGGCGAAAAAGCAGTAAGTCTTCCGC 18088 35 91.4 0 ...............................GTG. | ========== ====== ====== ====== =================================== ========================================= ================== 20 35 99.6 38 GTTTTAAAATCATTACCCCTCACGGGGATGGAAAC # Left flank : AGATTTAACACAGATTTTTAAAGCACGACGCAAGCGGACGGGGGGAGAAAGGGCAGATGAAATAGCCTCAAAATGGGCGACAATCTTAGCACGGCGGGAAATGGGCGAGTCATTGCAGGTGGTGGCAGAAGATTTAGAGATGCCTTATGAAACGGTGAAGACTTATGTCAAGTTGGCACGACGCGCTTTGAAGAGTGAGGAGTAGTTTGGTATACTCTTGTTTAATCAAGCAGAACCTTGAAAAATTAATATTGCGTTTCTTGGTGAAAGTTAAAGTGTTGGTTTTTACCCTACACACGCAAATTTTTCGCGGGGGTATGCCAATGCTTGAAACCCTGATTCTTTCGTTGACCCCCGCGAATCGCTTACTGCATAAGGCTTTGAGATGTCTATAGTGGTGGTTTAATGTCAGTAAAGTATGCTTATTGACAGCAAAATTAGACCCCCCGCGAAAATGGCACTTTCAAACCCAGTCGTAGTAAGTGTTCTAGAAGGGTAGG # Right flank : GATTCCTCAACCAATAACTTTGAAGGAAAAAACGCAGCCCTGCCATATTCAAGGACTGCGCTACATAATTCTGCTAATAAACTGCTATCTTTAATTACCGTTACCGTGGATAATCGGAGCAACATCAATACCCACAGGTTTGATTTCACCAACCGGCAAAGGATTTCCTTGCCAGTCACGTTGTGCATCCATATATTGCATCCGTCGCTTTGGTGAGACACAAGACATAGCCAGCGCCATAGTCATCATCTTGGTTCCGCCAGTGATGTCAGCAACTACAGCCTCGTCTTTGTAATCTGATTCACGGAAAATTTGATCTCCTATCTCCCAAAGCCTTTTATAATTCCAATCTTCCACACAATAACCTTGAGTGTGGACTTCTAGACGTTGCCCATATTCAAAACTTAAATATTGTGACAAAATTTTGGCAGTAATCTCAGAGCCTTTAACCAAATCGTAGCTTTTACTGCTAATTAACCAAACATCACGTAAGTTACCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAAATCATTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 24945-25130 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054694.1 Nostoc edaphicum CCNP1411 plasmid pNe_2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 24945 35 100.0 40 ................................... GGCATTGTATTGCTGCGTTTGGGAATCTTAGTGGCTTCAA 25020 35 100.0 41 ................................... AAGTTCTTGAAATAGTGAACAAGTCGATTTGGACACGAGAT 25096 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 100.0 41 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : GTTTAGGCAAGAACTCGTTAATCAGCACTTTCAAATCAGTCTGACGAAGTTGAGCTAGTTTTATCAATGCTTCTGCACGTTCAGCATCTTGTTGCTCGACGCGTTCAACATACATTAGTAGCTCTTGATGCTCTGTGTCTCTAATTACTCCAATCTCGTTTTGTTGACGCAGATAAGCCAATCTATCTTGTTCTTCGGGAGACAGACGGTGTTGAATAATTTGAAGCAAAGCAGCTTCGCTGATTTGAGGGTTTGGTGTTTCTGATACCTGTAAAGCTTCGTGAGAAAGGGCTTCTAAAAATTCGACAGCCTTTACTAAAGATTCTCTTGGTAATTGTTCGAGTAAAGCGATCGCTCTTTTACGAATTTCTGTAGGTACAGCCATTATTACCTGACCTCGTTTGCTTCTAGCTTAGATTATAACCATCTTGCCCTGCTTTCTATAATTCCATCCTCTCAAACGAAAAGGCGAATGAACGACACCAACAACAATGCTGTAT # Right flank : CTCTTGAAGCGACACCACCCTTGGTGCGTAATATGGTTAAGGTTTAATGGGTAGGGCAGGGATATTGCTACCCCTTTCCCCCCGACAAACCGGACAAGCAAGTTAACCAAGCATCCGGCTTTAGCAAATCCTAGAGCTACCAAAGACTCAGTTCATCATCGAGTTCAGAATTGAGTTTCTGTACAATATAATGTATTTGTTGATGACAGTAATAATGCACTAGTTCCAAATTAGCGTAAGTATCGTTACCACCTTGATGACAAGGAATTATATGATGCTTTTGTATGGGTTCATCATTGAGTAATGACTCCCCGCATACAGGACACTTAAATCCTTGTTTTTGGGCAAGCTTCTGGTAACTAGGAATTAAACTTTTAGATTTAATATTCTGACGGTTTTCCCAATAAGATTTTAGCTCTGGGTCATCGGTAGAATAAGCACCCTTTACCATTGGATGTCTCCTAATATTGAACCAGCTAAACTTGAGCAGATGTTTTCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 28688-27561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054694.1 Nostoc edaphicum CCNP1411 plasmid pNe_2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 28687 35 100.0 40 ................................... ATTTCTCTGCATCTAACTTTGAATTGAAAATACCCCCAAT 28612 35 100.0 42 ................................... TGGTAGGTGGAATTCTCGTTGGGGGTGGATTTTTGTGGGGTA 28535 35 100.0 37 ................................... TCAATTGTTTGTTGATCTGCTGGCAGCTTTGCCAACA 28463 35 100.0 40 ................................... GTGGCGCTCCCGATGGGGGAGTGCAGGTGCTAACTTTCAG 28388 35 100.0 37 ................................... CTTTTACCATCAGGTAAAAAAGCAGCAAACCTTACTA 28316 35 100.0 36 ................................... CTTCTTTTATCAGGGTGAGAAGTGCAGCACCTATAT 28245 35 100.0 37 ................................... GAATCTTACAAGTGGTCTTTTATTAATCCTAAGAATG 28173 35 100.0 39 ................................... GTCTTTACTGTCCAGGCAACATCCCTGGCATAAAGAGTA 28099 35 100.0 35 ................................... TGCAAAATATGGCCGTTGCTGAGAGTTAGTTTATA 28029 35 100.0 35 ................................... AAACTGCATCCGCCCCAGCATTCGCAAAAAGACGT 27959 35 100.0 37 ................................... AATTCATTTTGGAAAGCCTCCATAAATGAAAGCTTCG 27887 35 100.0 41 ................................... TTGGGAGACTTTCCTTCTTGATTTTTCTGCTTTTTCCCTCA 27811 35 100.0 36 ................................... TGAACATCTTCCGCTGCAAGTCTAATCCGCTCTAGA 27740 35 100.0 38 ................................... TAATGCATCCTTGCAGAAATATAATTTAACTTGTCACA 27667 35 100.0 37 ................................... CTGTCCCGAATCATCGGAACCATAACGGCTCGCATGG 27595 35 91.4 0 ...............................GTG. | ========== ====== ====== ====== =================================== ========================================== ================== 16 35 99.5 38 GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Left flank : CATACTGGACAAAAAGTAGCATACCGTCGCGCTCTTGAGTTGCAGGTACGAGAATATATCTCATGCTTGAAGGGTGAAGTGGAAGTTTACCGACCAATGATTTGGGAGAAATAAGCTGTTCCACAAATAACCTTGCATAACTGGGGCGGTAGTAGAGAAAACTTATGTTAAGTTCGTGTTTTATGCTGTGAAAAGTCAGAGTACTTTGTGATACTATCTGAAACAACAGACAGAACCTTGAAAACTTAATCTAACGTTTCCAAGTGAATCTCAAAGTACTTGTTTTTACTTTGTGTACGTAAATTTTTCGCGGGGGTCAGGCGATCGCCAAAAGCCTTATTCTTTCGTTGACCCCCGCGAAAAGCTTTCTGAGTAAGCTTTTGAGAAGGGTCTACTAGGACTAAATTCTCAATAAATGTAGCTTATTGACAGTTAAATTAGACCCCCCGCGAAAATGGGTATCTGTAACCCTGTCTGCATAAGGCTTCTAAATGGGCAGG # Right flank : GACTATCGGTTGCACGTAGAGAGTGAGTTCCTCAGAAAAACTCGTGGCAAGTGTCAAAAGCCAGTACCCGCCCGAAGGAGCATTGCGGGTAACTGCGATGTTTCAAAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCACAGTGAGGTGAAGCGCTAGGGTAAAACTAGACAGGGTTAACAGATGTGAATCCTCGTAGAGGCATCGTGAAGAGGAATTACCGAAAACGGCTGAGACGGTAAAAGGGGTAAAAGTGATTCTGCCCAATCCTCAGAATCAGTAGACACCTTGAACCCCCGGTGTATAGAGGGAACCCAAGCTAGTTGTATCTCTCGCGTGTGATACGTAGGAACCCCAACGGGGTCTTTGAACTAGGTCGATGTTTTAAGTAGAGATTGGAGTAATCCAGCTTTAATCCCCCGGTGGGTGTAAGATGCCACAAGAAGCGAATGCTGCTATGTCGAAAGGCAACAGGAAATCATAACTGGGCAGATAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 32520-32916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054694.1 Nostoc edaphicum CCNP1411 plasmid pNe_2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 32520 35 100.0 40 ................................... ATTCAATCAAAGTGAAGCCACCTTGTTGATTTTTTTTGGC 32595 35 100.0 37 ................................... TCGCAGCATCAAGAATTTGCTTAAATTCTTGAGACAT 32667 35 100.0 39 ................................... CCTATCGAGGAGGCATTGCAATGTCCTCTTCTTGTTTTG 32741 35 100.0 35 ................................... TTGCGCCATTCAGTTGTATCCACAATCACATAATG 32811 35 100.0 36 ................................... TCTTACATTCTTCTCCTGCGCTATGGGCGTTAGAAA 32882 35 91.4 0 ...............................GTG. | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 98.6 38 GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Left flank : AGAAGCAAGTCATCTTATAGAGTTACTAAAATATGTGACTGAACGCGGAGACTATCAACTTTGGTATACAGATTACATGGTTATTGCACGATAAAAAAGTTAATAGTTTAGGCGTTCAAAACTTCAAGTAGTTTGTTATACTACTGCTCAATAGCCACAGAACCTTGAAAAGTTAATAGTTTAGGCGTTCAAAACTTCAAGTAGTTTGTTATACTACTGCTCAATAGCCACAGAACCTTGAAAACTTAATATCAGGTTTCAAAATAAAAGCGAAAGTGCTTAGTTTTACTTTTCATACGTAAGTTTTTAGCGGGGGTAAGCCAATCCCTGAAACCCTTATTCTTTCGTTTACCCCCGCGAAAAGCTTGCTGGGTATGAGTTTGAGATACCTAAGTCTGTGTCTAATTGTCAATAAACTATACTTATTGACAGGTAAATTAGACCCCCCGCGAAAATGGGTATCTGTAACCCTCTCTGGACAAGGCTTCTAAAAGGGTAGG # Right flank : CGACTATCGGTTGCACGTAGAGAGTGAGTTCTGATGAAAAACTCGTGGCAAGTGTCAAAAGCCAGTACCCGCCCGAAGGGGCATTGCGGGTAACTGCGATGTTTCAGAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCACAGTTAGGTGAAGCGCTAGGGTAAAACTAGACAGGGTTAACAGATGTGAATCCTCGTTGAGGCATCGTGAAGAGGAGTTACCGAAAACGGCTGAGACGGTAAAAGGGGTAAAGTGATTCTGCCCAATCCTCAGAATCAGTAGACACCTTGAACCCCCGGTGTATAGAGGGAACCCAAGCTAGTTGCATCTCTCGCGTGTGATACGAAGTAACCCCAATGGGGTCTTTGAACTAGGTCGATGTCAAAAGTAGAGATTGGAGTAATCCAGCTTTAATCCCCCAGTGGGTGTAAGATGCCACAAGAAGCGAATGCTGCTATGTCGAAAGGCAACAGGAAATCATAACTGGGCAGATAGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 35343-35666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054694.1 Nostoc edaphicum CCNP1411 plasmid pNe_2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 35343 35 100.0 39 ................................... AAGAGTCAAGAGTTAGTAAGAGCTAGACTTAACCAATTT 35417 35 100.0 37 ................................... ATTTGACGTTGTTCCGCAACGTTCAACATACTGCTAA 35489 35 100.0 37 ................................... CTAAGAAAAGTACTACTACAAAAAGCGTCTTCCAGTC 35561 35 100.0 36 ................................... TCTCCAGAAAACACTATCATAATTATACTAGTAGCA 35632 35 91.4 0 ...............................GTG. | ========== ====== ====== ====== =================================== ======================================= ================== 5 35 98.3 38 GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Left flank : CGCACGGGAAAACATCTGCTCAAGTTTAGCTGGTTCAATATTAGGAGGCATCCAATGGTTAAGGGTGCTTATTCTACCGATGACCCAGAGCTAAAATCTTATTGGGAAAACCGTCAGAATATTAAATCTAAAAGTTTAATTCCTAGTTACCAGAAGCTTGCCCAAAAACAAGGATTTAAATGTCCTGTATGCGGGGAGTCATTACTCAATGATGAACCCATACAAAAGCACCATATAATTCCTTGTCATCAAGGTGGTAACGATACTTACGCTAATTTGGAACTAGTGCATTATTACTGTCATCAACAAATACATTATATTGTACAGAAACTCAATTCTGAACTCGATGATGAACTGAGTCTTTGGTAGCTCTAGGATTTGCTAAAGCCGGATGCTTGGTTAACTTGCTTGTCCGGTTTGTCGGGGGGAAAGGGATAGAAATATCCCTGCCCTACCCATTAAACAAAACGCGCATTCACATAGCAGCCTGCGTCAAAATA # Right flank : CGACTATCGGTTGCACGTAGAGAGTGAGTTCCTCAGAAAAACTCGTGGCAAGTGTCAAAAGCCAGTACCCGCCCGAAGGAGCATTGCGGGTAACTGCGATGTTTCAAAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCACAGTGAGGTGAAGCGCTAGGGTAAAACTAGACAGGGTAACAGATGTGAATCCTCGTAGAGGCATCGTGAAGAGGAATTACCGAAAACGGCTGAGACGGTAAAAGGGGTAAAAGTGATTCTGCCCAATCCTCAGAATCAGTAGACACCTTGAACCCCCGGTGTATAGAGGGAACCCAAGCTAGTTGTATCTCTCGCGTGTGATACGTAGGAACCCCAACGGGGTCTTTGAACTAGGTCGATGTTTTAAGTAGAGATTGGAGTAATCCAGCTTTAATCCCCCGGTGGGTGTAAGATGCCACAAGAAGCGAATGCTGCTATGTCGAAAGGCAACAGGAAATCATAACTGGGCAGATAGG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 6 38279-38101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054694.1 Nostoc edaphicum CCNP1411 plasmid pNe_2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 38278 35 100.0 37 ................................... ACCATATCACCTCACGAAGGTTGATGATAAATAAAGG 38206 35 100.0 36 ................................... TCGTGAAACTTGTGCGAAGCAGGGATTAAGAGACTC 38135 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 100.0 37 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : AAATTAGTCGCAATTTGAAAATGTTCAGCTCCAAAAATACTTTTCCAAAGTTCCAGGGATTCTAAAAAATATTTTTCGGCTTGTGAGTAATTCCCTTGTGAATGATATAGTGCTGCCAGATTATTTAAAGATTGTGCAACATCAGGATGTTCTGAACCTAAGAGACTTTTTCTAATAGTTAACGCTTGTAAATACAAGGGATTGGCTTCTAAATAACATCCTTGTATTCGATATAATTCTGCTAAGTTATTCAAGCTATCACAATATTCTGAATGCTCTGTTAGCTGCTGACTTGATCCTAAGTTTACAGCTTGTTGGGCAATAATTATTGCTTGCTTTAAGTTTCCTTGTCCAGCAAGTTGCACAACCTGTAAATTAAGTTGATTTAATTTTTTTATGAGTTTTTTCATCTGCTAGTTCCAGATGCTGGTATATTTTTTAGTTTTGACTTTTCAATCAATCAATCAATTACTTATTTTACCTAAAATTGTTCATCATCA # Right flank : TCAAGAGTTGGAAATAGACCACCCTCGTAAAATTTCAGAGAAAGTTTAATGGGTAGGGCAGGGATATTGCTACCCCTTTCCCCCCGACAAACCGGACAAGCAAGTTAACCAAGCATCCGGCTTTAGCAAATCCTAGAGCTACCAAAGACTCAGTTCATCATCGAGTTCAGAATTGAGTTTCTGTACAATATAATGTATTTGTTGATGACAGTAATAATGCACTAGTTCCAAATTAGCGTAAGTATCGTTACCACCTTGATGACAAGGAATTATATGATGCTTTTGTATGGGTTCATCATTGAGTAATGACTCCCCGCATACAGGACACTTAAATCCTTGTTTTTTGGGCAAGCTTCTGGTAACTAGGAATTAAACTTTTAGATTTAATATTCTGACGGTTTTCCCAATAAGATTTTAGCTCTGGGTCATCGGTAGAATAAGCACCCTTTACCATTGGATGTCTCCTAATATTGAACCAGCTAAACTTGAGCAGATGTTTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 274833-274134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 274832 36 100.0 39 .................................... TTCATTGTTCTAAATCTGATTATTCAAGATTTGCATTCC 274757 36 100.0 41 .................................... TTCTTTTGCCAAATCATCAAAGTGTTCAGAATCTTTAGCAG 274680 36 100.0 41 .................................... GCTTCTCCGTCCTGAGGTTCTGTCAATAATCCCAGAATTTC 274603 36 100.0 33 .................................... TTACATCTATGTTATTTGTCGCAGGTTTGAAAA 274534 36 100.0 39 .................................... GTCATAAAAAGGAAGCCCTTCGCTAATAAAAAAACATCA 274459 36 100.0 33 .................................... TCCAAATCGTTAATTTGGATTCCTTTTTTTTCA 274390 36 100.0 38 .................................... TAACGGTGTATATACAGTGATGCGAGGCTTATAGTATG 274316 36 100.0 36 .................................... ACTGTGCTTTCTAAGCTTCCATATATTTGGTTGGCA 274244 36 100.0 38 .................................... ATTGGTGGATATTTTTTTGAAAAAATATCTGTAACCAA 274170 36 86.1 0 .........................CT...C...GT | T [274140] ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 98.6 38 CTTTACATAACCACTTCCCCTAACGGGGATGTAAAC # Left flank : TAGGGCAAAAATAAAACAGGAGTCAGAATACAGAATTCAGAATTCAGAATTCAGAATACTCTGCCCATAAAGGGATAGAGTTTTAAGGTGAAAATATTTTAATTTTTTTCGCTTGACTTCGGGCGTTAGCCTCGCGGGACGTTCGCGGTAGCGTCTCTAAGAGTTGTACGGTTTTAACCAATATTCGTCACCCACTCGTACAGAATTCATACTGAATACTGAATTCTGACTCCTGAGTTCTGAATTCTTCTTATAAACCTAATACTTGACAATCATAGGTAACGTGCTATACCCTTTCTTTTAATGTGTTGATGCTCATCTACACACCTCGCCCGAACCTTGAAAACCGCATAATTCCGTTGAGGTATGTCGATGCCTTACGCAGTAAGCTTTTCAGACTGCAAAATTGATACTTTTTTGAAAATTTTTTGTACTTTTCAAGAGGTGTGTCGATTGGGGTATCTGAAACCCTCTCCCAGTAAGGTTTCCAAAAGGTAACT # Right flank : TTTTTAATTGCGAATTGCGAATTGCGAATTGCGAATTGCGAATTGGTATCACAACCCCAATATTTAGCCTTTGAAAATGATATCGTACAGTGACAGTAAAACCTCTACCACAATCAGAATCACCACATACCACTCTACACGCTGACTACTGCTATGCTGCATGAACTCCAGCACTGTTTGGGCAGTTTGAGAAATTAAATCTAGTTTACGTTCTAGGGCATGGTGACGCTCACGGATTTCGTATTCATCCTCCAAGCGCAGATATAAGTTTTCTAGCTGTGGGGCTTCCCAGAGCAACTCCGGCTTATCGATAATCTCTACTTGACCCACAATTTTATGTTGAACTAATAAGGTAGTCCCTAGTTGACGCAGTAATTCCCGGCTCTGGTGTCTACTTCTGTTTTCACGCTGGAGACTAGCTGCAAACGGTTCAATTTGATCGAATACAGTCGCTAGGCTGGTTTCATAGTGAGACAACACAACACTCTTGGCGAGAATAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATAACCACTTCCCCTAACGGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 467357-466959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 467356 36 88.9 38 ....TT.................GA........... TCTGAAACTGCATTCGATGGAGACACTCTTCTTAAAGT 467282 36 97.2 37 .................A.................. TTTACCAAGACATGGTTGAAGGAACTACGTCCTATTC 467209 36 100.0 36 .................................... GGTGGCGGGAAAAATTTAGCGGGCGCTTTTATTCTG 467137 36 100.0 35 .................................... TCAATTTGGTAGCACAACTACCAACGAGCAAAATT 467066 36 100.0 36 .................................... TCGGTTTAGGTGGGGTACTAGTAAATGCAAGAATTA 466994 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 97.7 37 GTTTACATCCCCGTTAGGGGAAGTGGTTATGTAAAG # Left flank : CTGCTGACCAAGCATCTGCCCATTCACCCATTGCTGAAGAGGGGGTGATGGGATAAATGGCAATCACTTCATTTAGTTTGTAAGCAACACGGGCGACAGCTTCATTCCCATCGATGGTTGCAAAGGTTTTGTTCATAATTGGATTTTTGTCCCCGTCTCTCAGTGTTAATAGTAAGAGCAGAATTCAGGAGTCAGAATTCAGAATTCAGAATAGTCAAAGAATTAGGAAAAAAATTTATACATAAATGTACTAATAATGCTGGATTCCTTTCAAAATCTGACTTCTGACTTTTGGGTGGTGAATTCTTACTAAGAATTTATCAATGATTTTCGGCTCTTTAGTTAACTTTAAATAAATACTTCATATATTAGTATCTCATCCGAAATACTGCGTCTATTAATATGTATTAATAATGTACTCAATAGCTAAAGCACTTATTAGATAAAGCTTTCAGTTAATTGATTATTTTTTGTGGGGTATGGGGTCGGGCTTTTATCTC # Right flank : AGTTACCTTTTGGAAACCTTACCAGGAGCGGGTTTGGAACCCCCTAATCGACACACCTTTTTTCATTGTCAATAAAACGGTGCTTATTGATAAAAAAGTTGTGATTTTGTCGGCTGAAACCCTTGCTACAAGAGCAATCGACACACCTCAACGGAATTATGCGGTTTTCAAGGATCGGGCGAGGTGTGTAGATGAACTTCAACACACTCTATAAAGAGTAAAATATCTTACTTAAAATTGTCAAGCTGTTTTGCCTTGGTTTTCAATGTTTAGTTCATCGCTTCAAACCCTTGATGCTCACTGATATTGAATCCATGAGCAAGTAGAGACAGCAGTAAGCCGTTGCAAAATTCTTGCTGAATGAATCGAAAGCGATCGGCTCAACGATATACCAAAATGAATGCGTGAATTACTGAAATGAGAAAGCAATCAAGCATTTTGAGAAAGCAATATGCCTTTTTGCTTGCTGAATCTACCGAAATGAGAAAGCATTTAAGCTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCCGTTAGGGGAAGTGGTTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 1204892-1205810 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1204892 37 100.0 40 ..................................... CTGACGTTGCCGAAAGATTGCGAAAAGGAGAGATTGTCAA 1204969 37 100.0 39 ..................................... CCAGACTTTCTGGATTTCATCTAAATTCAACATTTTCAG 1205045 37 100.0 42 ..................................... ATCGGAAATATGAAACAACCAGCAGCTAACCGAGCTAGTCAA 1205124 37 100.0 36 ..................................... AAAAGTGACTCTCAATTTAAAAGGCATCTAAAATTT 1205197 37 100.0 33 ..................................... GAGTATGCCATCAAAATGGACGAAAGTAATGGT 1205267 37 100.0 38 ..................................... TGCTTCTACTCGGCTGTATAGAAATTTTTATTGCAAAA 1205342 37 100.0 37 ..................................... CAAAGTGGAACGATGTACTTAAAAAACAATATCTCAG 1205416 37 100.0 35 ..................................... GGTTAAGGCATCTCTACCATTGAAAGGCTGTAAAG 1205488 37 100.0 37 ..................................... GAAAGAGAAAGAGAAGATTGAAGGTAAAAAAACTGAT 1205562 37 100.0 34 ..................................... TATTTTTAATCGCGCTCTGCTATGTTTTCGTGAG 1205633 37 100.0 32 ..................................... TTCATCTACACGCGGGATACGTGCAATTTCAG 1205702 37 100.0 35 ..................................... CAGCTTCGATTTTTATTCCCGACCTCAACGATTAC 1205774 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 13 37 100.0 37 ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Left flank : CGGTGAATCTTGCACTAGCGCGTGGCCCAAAACCCGTTAAACCTCCAGCCGCTAAAGTTAAAACAGAAGAACTTGAAACCGAATCAGAATCAGAATCTACCTCTGAGGAGTCTCAAGACTAACATTAGAAGTGCCGCGTGTGATGTGGGAGGCTATAAAGACTGTGATTTCTGGCTCTGAAGGCAGCGATCGCGCCCCCCATCACCATTAGGTTATTGTGTAGCTTCTCACGAGTTCCTGTATGTCAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGGCTCAAAAAAGTGCTTCTATCTCAACACCAGCAAGCATTTTACCCCGCTAATCTCCCAATTGTCATCCGCGCAACGTCTGAAATGCTTACAAAAAGTGGGTTTCAGCTTTCAACTTTTACCGACACTCTTCCCAAAGAAATTCTCTAATGCTATGATTGCTCTAGATTCGCGCAACCGTACCTTGAAAACTAAATACAGCTTGGCTTTCCGGCTTCTGCC # Right flank : CTTAGAATTTCTTTCAGACTGTATTTCTTGGCAACAGATTGATGAAATTATTGCTTACTTTGATGATGGCACAGTGGGAAGAAAACTTTGCGATTTACTGAAATTCTTATTATTCAAAATGGGTTCGCAACAATTAATCAGTGGTTGATTAGCTATTGCTTCCAAGCCAACTGAATTAAGCAAAGTTGTCCAGTTTGCCAGTAAAGTCTCATTGTGGGGATTTTTATAGCGTAATTCTGCCAAACTCACAATAGCATCATACCAAACACCATTTGCAGTATAAAGCGTCGCCTTTTGTTGGGGTGTTGCTTGTTTGAGTTGTTCTGTTAATTTTGAATTTTGGTTAACCCTTTGCACCCAACCATCTGCATAATCCAGTTTCGTAGATTGTTTTTGGTCACATTGAACCCGTACTTTAAAAAACCAGTGATACATTTTTCCCACCTGCAATGAGCCTTGATTCGGGGGATAATGAACGCTAATAATACCTGGTGATTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 4 2334359-2334748 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 2334359 35 100.0 34 ................................... TCCGTAGTCACATTCCTTCAAGAATTCACTACCA 2334428 35 100.0 35 ................................... AGTCTTCTTTTCTGTCCCGGTTGGTGCCTTCACAA 2334498 35 100.0 38 ................................... CTTCTTCTTATTCTTGGGTCTTTTGAAAAGAAACAACA 2334571 35 100.0 38 ................................... AAATGTTGAAAAACCTTTCTGTTTTAACCATTCCAAGC 2334644 35 100.0 35 ................................... CATTGGACTAAGATAACTTCAAAGCCTGCTTTTGA 2334714 35 91.4 0 ...............................GTG. | ========== ====== ====== ====== =================================== ====================================== ================== 6 35 98.6 36 CTTTTTCATCAACTTCCCCTCACGGGGATGGAAAC # Left flank : CCAACTGAAACAAAAAGGTGTATTGGTACTAGATGCACCAGCAAATCAAATTGCCGATCAGTTGGTTGAGCGATATCTGCAACTCAAAGCGCGAAATCAACTTTAGACTATGACTAAAATGAGCTACTAGGTGGAGTGAGTGATTTTATACTTTATACTTCACCTTGACTTTTTTAGTAGATTTCTATACGCTGATTACTAAATTTACTGAACCATGAAAAATTAATAAACCTAACTTTAAAGCTAGTGTTTCTAACTACTCCCAATCATTTGACAAACTTATAAATTAGTCATTGATTGATAAGCATCTGAGGGGGTCAGGCAACGGCTGAAACCCTTATTCTTTCGTTGACCCCCTCAGATAGCTTGCTGAGTAAGCCTTTGAGGTGTGTCAGAATCAGTTTTATTGAAAGAATTTATCAACTATTCCCCTGGAAAAACGACCCCCTCAGATTGACCCCTCACGAGCTTAATTGTGATAAGACTTCTAGAAGAGTAGC # Right flank : CGACTATCGGTTGCACGTAGAGAGTGAGTTCTGATGAAAAACTCGTGGCAAGTGTCAAAAGCCAGTACCCGCCCGAAGGGGCATTGCGGGTAACTGCGATGTTTCAGAGCTAGAGGGTAAAATGCGCGACATCAGCAAGCCGCACAGTTAGGTGAAGCGCTAGGGTAAAACTAGACAGGGTTAACAGATGTGAATCCTCGTTGAGGCATCGTGAAGAGGAGTTACCGAAAACGGCTGAGACGGTAAAAGGGGTAAAGTGATTCTGCCCAATCCTCAGAATCAGTAGACACCTTGAACCCCCGGTGTATAGAGGGAACCCAAGCTAGTTGCATCTCTCGCGTGTGATACGAAGTAACCCCAATGGGGTCTTTGAACTAGGTCGATGTCAAAAGTAGAGATTGGAGTAATCCAGCTTTAATCCCCCAGTGGGTGTAAGATGCCACAAGAAGCGAATGCTGCTATGTCGAAAGGCAACAGGAAATCATAACTGGGCAGATAGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCATCAACTTCCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 2647760-2649324 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2647760 37 100.0 34 ..................................... AGGATGATAAACCTTAATTCCTAAATCTTCTAAG 2647831 37 100.0 36 ..................................... GAATAGAAGGCTCCGTCCGTGTCACAAGATATAAGA 2647904 37 100.0 34 ..................................... ACTGAAGAATTTCGCATATCCAGAAAGTTTACGT 2647975 37 100.0 35 ..................................... TTTAGCGTAGTGCGTATACGTGTATTCTATGTTTG 2648047 37 100.0 41 ..................................... AGGAGTGAAGCGGCGCACAGTCTTAAGTTGCAAACGGGGAG 2648125 37 100.0 35 ..................................... AAAAGGCTAAACAGTAGATAGTTCAAGAGTTTCAA 2648197 37 100.0 34 ..................................... GTATATAGATCGAATAAGAATTTACTTTTTTGAT 2648268 37 100.0 39 ..................................... GGTTCATTTGCAAACTTCCAACGCTTTGTAGAGCCTAAA 2648344 37 100.0 38 ..................................... TAATATTTGGGAATTGTAAAACAGCCATAGCATTTAAA 2648419 37 100.0 34 ..................................... TGGCATAAAACACTTTGTATCATGATGAAAGGAC 2648490 37 100.0 34 ..................................... AGTTTAATCTTTTGGGAAAATTAATCAATCCCTC 2648561 37 100.0 34 ..................................... AAACCGAACATCAGCAAGCAATTCTCGCAACTCT 2648632 37 100.0 40 ..................................... AAAGAAATATCAGGATTGGAAAGCGGGAAAAGTTGATATT 2648709 37 100.0 36 ..................................... ATTCCAATTACCACAATAATCATAAAGTAAAATGGT 2648782 37 100.0 36 ..................................... GAATTTCAGGAATGGGCTGAATTAGAAGCCGATATT 2648855 37 100.0 35 ..................................... GAGCGTATCTTGCCCAGCTTCACGAGCGTAATGAT 2648927 37 100.0 35 ..................................... GGGAACGTTCACAAAATAAGATAGATCGTCAGTAG 2648999 37 100.0 37 ..................................... GTAAACGCTATAAAACAAATCCCTCAACGTGACGCAA 2649073 37 100.0 34 ..................................... AACAGCCTATGGGATGATGTGGCTGGATTTGATC 2649144 37 100.0 36 ..................................... TGCACACTTACTTATGGAGATAACCGACATAACAAC 2649217 37 100.0 34 ..................................... GTGTTAATAAAATTTGTGCCGTCAAAGCCATAGG 2649288 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 22 37 100.0 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TCCCAATATGCCAGGAGCAGTACCTTGGACAGCAACTCAGGCACTTAATAATAGTACATTACCTTATGTTGTCCAGTTGGCAAATTTGGGAATTATGGCACTGGAAGTTAACCCAGCATTAGCTAAGGGTGTGAACGTGCGGAATCATCATTTAGTGCATCCGGCTGTGCAAGAGGTATTCCCTGATTTGGTCAATTAAGGTTTGCAAGTGCTAGGCGATCGCTTATTTTAATGGTGATAGCGATCGCTAGTTAGACTAATTTCCTTGCCAAATGCGCGGATGGGTAGGTGTACAAAATGAGATGGGGCAAAAAAGCCTGTATGTTGCATCTATACAAGGCTTTGAGGGTAATGGTACTTTTAAACCATCCGCGCACCTTATGGGAACTGGTTTTCAGCGATTTGTATCTTGTGTTATTACTATTCCCTGTGCTATGATTCACTCATTCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGGCTTTCGGACGCCAGCG # Right flank : CTTTGGTATCAGAGTTTGAACATAATTAAGTTCAAAATATTGCAATTCATCAAAGGATAAATTCCCTGTAGAGACGGCGATTTATCGCGTCTCTCTAAAAGGTTGTTTGAAAAGTCGTATGTTGTAATTTTAATCGAATTATTACCCCCCTTAATCCCTCCTTATAAAGGGCTACGGTAGTACACACAAGTCGAATTACCCCCCTTAATCCCCCCTTGGAAAGGGGGGAAATAGAAAATCTAGTTCCCTCCCCTTTGCAACTACCGTGTATACACAAGTCGGATGTAAAGTAGGTGCAGAGGATTTTTGAGAAGCAAAAACTATGGATAATCCAATCTTAATTCACGCTTCGACGACACCAGGAACGGCATTTGGAGACCCAAGGCTGATAAAAAGGGGGCAGCATTATACGAGGCGATTCGTAAGCACCAATCGATAAATATCCGGCAAATAAGTCGAAATTGGGCAGAACAGATGGGTTATTATCGGTTTTTGGAGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 6 2654832-2656528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2654832 37 100.0 35 ..................................... ATCAAAGCAGTTGAAGATATCTCAAATTCTGCAAA 2654904 37 100.0 38 ..................................... AGCGCTTCGACTAATCCCTCTCGATCCGCCAAGGGCAT 2654979 37 100.0 33 ..................................... ACAAGAAGAAAATCGGATACTGAAAGCAGCCCA 2655049 37 100.0 37 ..................................... GCCTCTCCTATTGCTGGAGGAGCCGCGATCACCCTGA 2655123 37 100.0 34 ..................................... TGTGCATTCCAGTTTGTTGAACAGGTCGATAAGA 2655194 37 100.0 35 ..................................... AGGTTACTCTGAAGCCGTTGAAAATCAACTTCAAT 2655266 37 100.0 36 ..................................... TCAAGTCGATCAAGAGACAAAAGACCTATTTTTAGA 2655339 37 100.0 37 ..................................... ATCCAACAATACCGAAAATACCAATATTTATATTGCA 2655413 37 100.0 35 ..................................... CCTAAATTGGCATAGGAACCATTGAAAGTGGTAAA 2655485 37 100.0 42 ..................................... ATTCGCGGAGCAGGGCTTAATGCTGATACTTGCGGAGCGCTA 2655564 37 100.0 34 ..................................... GCAGGTTCTACTATTGGTTTAATTGGTGCTGGCG 2655635 37 100.0 33 ..................................... GGCAACATCCCCACTGGATTATCAGGAATCTGG 2655705 37 100.0 33 ..................................... TGAGCTTACTCGTTATCCCGTAGATTCTTTGAA 2655775 37 100.0 34 ..................................... AAGAAATCGACGGGAGTTCCAAATATTTGAGTGA 2655846 37 100.0 35 ..................................... TCAGGAGTAGCTTTCTCTATGTGATTCATATTGTC 2655918 37 100.0 34 ..................................... AAACCATAGCTCTAAACCGGAGATGGGGGTATCT 2655989 37 100.0 34 ..................................... GGGTTTGACTGGGTGCTTGATGCTTACTCCCCAT 2656060 37 100.0 36 ..................................... AGGGCGCTTGTATGGCTATTGCTAGAGTTAAGCATT 2656133 37 100.0 35 ..................................... AACCCCGGACAACGTAGGAACCCAATCGAGCGAAT 2656205 37 100.0 36 ..................................... CATATTGTGGAATAGGGCAAGTAGTGCTAACAACAT 2656278 37 100.0 34 ..................................... TTGTAAATGTTAAGGTCGAAAACATCGAAAAAGA 2656349 37 100.0 34 ..................................... TCAGATAATTTAGCAGTGGCCATAAACAAGCAAC 2656420 37 100.0 35 ..................................... AAAACCCGAACGATCGGCATTAATCCAGCCCTGAG 2656492 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 100.0 35 ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Left flank : GTTTGGAAATAAAATAGATCAGTAGGAAGGGAATAGAATAATAGGCGAGTGCGATCGTGGCATCAGAAATAATGTGTAACCAAACTAGCCCCGTTTGCCAGAGATAACAATGTCCGTGGGGAATAAAACCAATTGAGTGCAAAGGATATTTTAAAAGTGTCAACATGATTTTAAAGGTTACTGGATTTGCAATATATACCTCTAATCTCAGTATTCCCAAATCATCAAGTAGTAAGCTTAGTTCTCAGCAATCTGACTAATTTACTTGCAAAATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGGGCAAAAAAAGCTGCACACTCTATCTATACAAGACTTTGAGGGCAATGGTACTCTGAAAACATCCGCGCACCTTATGGGGACTGGTTTTCAGCGATTTGCATCTTATGCTATGACTATTCCCTGTGTTATGATTCATTCATTCGCGTAACTGCACCTTGAAAATCAAATACAGCAGCGCTTTCAGACGCCAGCT # Right flank : CAAGCTTGTTAAATTTGTCCAAATAAAATAAGGTAGCAGTATCTAAGCGATCGCGTCACTTTTCGGAATCACCAATATCATCCCAAGCTAATGGTAAAATCAATTTTCTAAAGCATTACCAAACTACCTTCTGCTTCTTCTTCAAGTTCATAACCATTAGCCAGTTTTTCAATTGCTTGGTCAATCATTGCCAAACCTTGATCTACTTTTTCAACTAAACTTAGCTGTCCTCGCAGTTCGGCAGCACCAACGAAACCCTTAGCATACCAAGTCATGTGCTTACGGGCTTGACGCACGCCGCGATCGCCTTTATATTCCCACAAGGCTTGTAAATGATCTCTTGCACATTCCAACCGCTGAATCGGGGTAGGTTTCGGTAATATTTCCCCAGTTTTCAGGAAATGATCAATTTCTCCCACCAAAAACGGATAACCCAAAGTTCCACGAGAACACATAACGCCATCAGCGCCAGTTTGTTCTAAACATCTCACCGCCGCTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 7 3835577-3837128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3835577 37 100.0 34 ..................................... AATCAGCAAAAATCAAGTCTTCGGTATATTCACT 3835648 37 100.0 40 ..................................... AAACCAATCACCAGATCAAAAATGGCTTGAACAGATACGA 3835725 37 100.0 35 ..................................... GTTGTTTTCAAGTTTCTTGAGGCGCTTATCAAAAG 3835797 37 100.0 35 ..................................... GATGATAGCAGTATGTGAAATTCTCCATAATTTCA 3835869 37 100.0 37 ..................................... TTCCACTGCCTAAACATCCAATCAGCAGTAGATTGAA 3835943 37 100.0 34 ..................................... TTTCCATCTCGCCTTCAAACAGAATTCAGCTAAA 3836014 37 100.0 35 ..................................... GTCAAGCGATCACCTGTAACAGTGTTGAGACTATC 3836086 37 100.0 36 ..................................... GGACACCAGATCAACAGTTCTTTGCCCTTGGCGGAT 3836159 37 100.0 35 ..................................... TTGCCTTAATTCTGCATCTAGTGCCAGCCAAGAAA 3836231 37 100.0 35 ..................................... CAATCACATTTCCGCAATCACATTGTAATCGCCAC 3836303 37 100.0 30 ..................................... TTATGCCAGATACAAGGGAACAACAGACGT 3836370 37 89.2 35 .G...T..CA........................... TTATGCCAGACCTCCTCCGGTTCGACGGTACTATC 3836442 37 100.0 35 ..................................... ATTGCTTTCATCCTTATATTGGAAACACTTATAAA 3836514 37 100.0 38 ..................................... TCGGTGATGTCTTTACCACCAGGAGTAAACAATGATGG 3836589 37 100.0 34 ..................................... TCGATGTTGTGATATACCCTTTTTACACCGGAGT 3836660 37 100.0 35 ..................................... CATACAGGACTTAAGGTTAAGTACATATTCCCTAG 3836732 37 100.0 35 ..................................... TGAAACGTAATAAGCTATTACTGTATCTGTTGTTT 3836804 37 100.0 35 ..................................... ATAACTAATGATTATTTACTAAACTTTCTACCCTT 3836876 37 100.0 35 ..................................... TTATTGAAAAAACAACATAACCGTCGGGTAATACT 3836948 37 100.0 36 ..................................... ATTTCAGCCGGCAGTTGCTCAACAATTTCTATGAGC 3837021 37 100.0 34 ..................................... GCTGAATTTAGCTGTCTGTGGGGTTCTACGTTGG 3837092 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================== ================== 22 37 99.4 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCGGTTTTGAAGTCTTACGGACAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTTCTACTCAGTATGCTAAACTGCGATCGCGTTTAGCTAAATTAATCAAACCTGACACTGATAGCGTGCGCTTTTATTTTCTCTGTGGCTGTTGTGAGCGAAAAGTTGAGCGTATTGGCGGAGAACAGCCACGGGACGAAACAATTTTCTTTGCTGAGTCAACTTCTAGATAGATTTCTGTATTTCAAATGCGCGGAGGGGTAGGTGTACAAATTCGACAGCCCCAGAAAAGTGCCTCTATTCCAACTACAGTAAGGCTTTCAACTCATTGTTCTCTTACTCGTCATCCGCGCAATCTCTGAAATGCTTATCAAAACTCGATTTCAGCCTTGAAATTTTCCTAACACTCTTCCCAAATGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATACAGCTTGAGTTTGAGGCTCCCGCC # Right flank : CTAGTGTAGAAAAAGGAGTAAACCTCAAAGCCTCTCTCCTTTTAGGAGAGAGGTTTGGAGAGAGGTCAAAATCAATACAGTTCGGATAAGGTTTTTTAATAACACGCCGCCAATTGTAGAGACGGCGATTTATCGCGTCTCTTGCCTTAACCGAACCGTATTGAGGTCAAAGTGTATTGCATACAAACGAGCGATCGCGGTATATTCCTTTCAAACAAAACAATGCAAAAATGAAAGGGTGGGCAAGCAGCCCACCCTAAACCATTATTTACTTAGCAATAGTTTAAACAGGTGCTTCAGTAGCAGACTTACCAACAAGCATTGCGGTATTTTCGTCGCTTTCCAGGATACCGAATTCAATCAACAACTCTTCCAACTCTTCCATCTCAATTGGGGTAGGGACAGTAAGGTTTTTGTTGTCGATAATCTTGGTAGCCAATGTCCGATATTCGTTGCTTTGATTGCTGTCAGGAGCGTACTCGTTAACAGTCATCCGACGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 8 4116670-4115268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4116669 37 100.0 35 ..................................... TTTTTTTATAAATGCCGAAGATGCCGAAGATTTAG 4116597 37 100.0 37 ..................................... ACAGCAATAACAGCCTTTGACTTCCCAGAGCAGTAAG 4116523 37 100.0 35 ..................................... GTACTACTCGTTACTCTGCACGGGTGCAAACATCA 4116451 37 100.0 35 ..................................... GTAGCTGTGGATACTGCTCAGGATGACGGCGATAT 4116379 37 100.0 33 ..................................... CAGAATAAAGTTCGAGCGCAAGATTGCCAGCTA 4116309 37 100.0 34 ..................................... AGACTCAATCATCGACCAGATCCCCTGGATAAAG 4116238 37 100.0 34 ..................................... AGTTAGAAGCTCAACCACAGTTACTATTAGAATG 4116167 37 100.0 33 ..................................... ATTTAGTCGCTGCTTCCAAGTGGAGGCAGTTTT 4116097 37 100.0 36 ..................................... AGCCATGTTGGAAGCGATCGCATCCCATGCATCATT 4116024 37 100.0 37 ..................................... TATATGCTCTATTCACAAATCGATTAGTTGGTAATCT 4115950 37 100.0 35 ..................................... TTGCCATTGCAGGTTTCACTATGGCTTCCATCAAT 4115878 37 100.0 34 ..................................... GCTGCTATTCCTTGGCAGATGAAAGGTATGTCGG 4115807 37 100.0 35 ..................................... CTTCTTCAATAAAATTTGACAATCCCTGCTTGCGA 4115735 37 100.0 34 ..................................... GTAGATATCCCGACTCAACCCACAGGGAAAACTC 4115664 37 100.0 34 ..................................... TTGACGCTTCTTTTGCGCTGATTAACTCACTGTT 4115593 37 100.0 34 ..................................... TCTGATATTTTTACGCCACCTTCTACAGAAACAC 4115522 37 100.0 36 ..................................... AATTTTCTTTCTGCCTCAAATCCCAATCCAATTGGA 4115449 37 100.0 35 ..................................... ATTGAATATCGTGCTGATAATGGTTTACGACTCCT 4115377 37 100.0 36 ..................................... CCCATAGCAGACTCAGCCGCTAAATTTTCGAGTGCT 4115304 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 99.9 35 ATTGCAATTACTTAAAATCCCTATTAGGGATTGAAAT # Left flank : TTTATGTTTTCTCTGTTGTTCATAGAATTAACAGACCTCATACGCAATTCTTCGCTGGAAAGGGGAACGAAAGAGGTTCTGATTAAAACAGCTTTTAGAGAATTTGCTTGTGCGATAACAGACTTTGAAGACGTTGCCAAATAAAGAGTTGGTTAGGGGTGTTGCTATTGCGTAGGCGTAGCCCAAATCAGTTACAGCACTGAACTCAGCTAACCTAATCGAGTAGGATATCTAGTAAGTAGCTTTCCAATCGGATTAGTTTTTTTCGCCAAATGCGCGGATGGGTAGGTGTTGGGGAAGAGGTAACTACAAAAATGGCTGAATTGGCTTATCTGCAAGAACTTGAGAGCGATCGCATTTCTAAACTATCCGCGCACCTTATGGGGAATAGTTTTCAGCCATTTGCCTCTAGCCAAATCACAATTCCTCGTGTTATGATTTTCGCATCCGCGCAACCGAACCTTGAAAACCAAATAAGACAAGGCTTTCAGACGCCAGCC # Right flank : AAGATTAGATAGAGTTTTAAACGTCCTAATTTGGGATTGCAATTACTTAAAATCCCTTTCACAAAGAAGTAGTATCAGAGGATGTTTTAAAAGTCCTTTTGTCAGGATCAAAAGTTTTTGATCCCCCTAAATCCCCCTTCAAAAGGGGGACTTTGATTCCGGTTCCCCCCTTTTGAAGGGGGGTTAGGGGGGATCTAAAAGTGTCTAAAGTCAAAGCAAAATACTTTTCAGATAACCTTTCAAATCAATGCCATTTTTACACTTTAAATAAAACTTTGAAAATCTGGCAGCAGCCAGATTAAATATTTTAAAGTTCTAACTTAAAACTCCAATACAGGCTATCCGTTTCATGAAAACCTTTGTATATAATGCTGTTGAGAATGCAAATATTCTTTACATTTAATCTGATTTAAAATTGTCTCTTAATACGGTTTGCTACAATTATTGTAGTTTTTATTTTTTAATTTTTGAAGAGGTCTAACATGGTTATGCGTCTTCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACTTAAAATCCCTATTAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 9 4131893-4129563 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4131892 37 100.0 36 ..................................... ACTGGCGTTAGTGGCGATGGCATAGTTGCCTATAGC 4131819 37 100.0 37 ..................................... TAAGAGTTTGGCATTCTTACTCAGGTTACAGCGATCA 4131745 37 100.0 34 ..................................... CCAAATTTGATTGATAATAGTAAGCAATTTAAAG 4131674 37 100.0 33 ..................................... AAAACAGTGCTTACAAACACCTTAAACAAGCCA 4131604 37 100.0 35 ..................................... TCCGCGCTGCATGTGGCGCGGGTGCTTGCTCCGGT 4131532 37 100.0 34 ..................................... TATCAATCTCGCCTTTAGAATCATTAAATCTTCT 4131461 37 100.0 35 ..................................... AGAAAGACTCTCAGGAGTAGGGTAATCAATCTCAT 4131389 37 100.0 34 ..................................... ATCTTGATGAGTATGACTCTGTAGGCTATAACGT 4131318 37 100.0 34 ..................................... CTCTTAGTCTGTGGTAACAATCTATATCTATCTG 4131247 37 100.0 34 ..................................... ATAGGAAAACATGACTCTTTCAGATATTCTAAAA 4131176 37 100.0 35 ..................................... TGACAGTAATAGCCCTGGAAGCATCAGCATCTTTA 4131104 37 100.0 35 ..................................... TTTACGTGTAGTAGGTTTGTCGTAGGTCTAAAAAT 4131032 37 100.0 35 ..................................... ATATTTGCTTAAATGCTAATATGTCAAATTGAGGA 4130960 37 100.0 35 ..................................... GGGGATGTTGGGGGGCAGTTTCATTTTCATCCCAG 4130888 37 100.0 34 ..................................... TTCTACAGACCCTCAGCTAGCGGCGCTGGCAAGA 4130817 37 100.0 36 ..................................... ATAGAATTTGATCCATTTGAATGGTATATACAAAAC 4130744 37 100.0 38 ..................................... GTTCTCTGTCCTGATGAAAAATTAGCTGCTGACCTTCC 4130669 37 100.0 35 ..................................... TCTTATCCGTTTATCGGTCTTGGTGTTATTATGCA 4130597 37 100.0 35 ..................................... TGTTGCTGCTATGCCTTGTAGTATCGTTATTCCGC 4130525 37 100.0 34 ..................................... GATCGTTATTCATATTGGGATAATTCAAAAATAT 4130454 37 100.0 33 ..................................... AAATCGTTTTGACACGAGCAAAGCCAATGATTC 4130384 37 100.0 34 ..................................... TGAACATCGGTGGGGACTTCCCCAACCTGAGCGA 4130313 37 100.0 35 ..................................... TTTTACTGCCATCAACAGTATACAAAAAACCACCG 4130241 37 100.0 35 ..................................... AGATAACTCCAAATCCTTGATTAACCTAGTCTTTT 4130169 37 100.0 33 ..................................... ATCCAAGGTTTACTGAGTCCGCGATCGCTAAAC 4130099 37 100.0 35 ..................................... TAGCTTATGTTTATAGGAGGAATAAGCTAAAAACC 4130027 37 100.0 35 ..................................... CTATTGATGCTCTTTACCAAGGGTTTAAAAGCATC 4129955 37 100.0 35 ..................................... GGTTATGTTGAAATTCCCGCCAGGGGGACAATCAA 4129883 37 100.0 32 ..................................... GAATAGACCAATTCCTCTTATCAACCGTAGAT 4129814 37 100.0 35 ..................................... ACGCTTATGATTCCACAGCAAAGGACAAACACCCT 4129742 37 100.0 35 ..................................... ATGATTAATTACAATAACGCCGACTGGTTAGATAA 4129670 37 97.3 34 ................G.................... GCAGCTTGAGCAAAAGTATCTGCGATCGCTTGTT 4129599 37 81.1 0 ..T........................A.G...TTTG | ========== ====== ====== ====== ===================================== ====================================== ================== 33 37 99.3 35 ATCGCAATCAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CTGGACACAGCAGCACTACCGAACGCATCCTTCAAAATTTACACGAATTATTAGAGCGATCGCTCGGACATCCTTATACTCTGAAGGTAATTGATGTTTTAAGCCATCCAGAACAAGCAGAACTCAATCAGGTTTCTGCAACTCCTACCCTTGTCAAGGTTTGGCCTCACCCAATTCGCCGAATCGTTGGAGAGTTGGATCATGTAGAAAAGATTTTACAGATGTTAGCTGCTAAGGAAAATTTTTAAATAATCAAGCTAGTTTTTTGCGAAGTGCGCGAATGGGTAGGTGTTGGTGAAGGGGTGACTACAAAAATGGCTAGATTGCCGTATATCAAAGGGTTTGAGGGATTCAGCATCTTTAAACCATCCGCGCACCTTATGTAGACTGACTTTCAGCTATTTACAGTTAGCACAATTGCCACTCCTTATGTTATGATTTCTGCATCCGCGCTATTGAACCTTGAAAACCAAATAACACAAGCTTTTCAGACGCCTGCG # Right flank : AAAAGTGTTTCGCTGTGACTTTAGGCACTTTTAGATCCCCCCTAACCCCCCTTAAAAAGGGTGGAACCGGAATCAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTAAAATTTTTGATACCAAGGAGTATGATAAAAGTTTTGCTTCTTGATTACTTTGTATCAAAAAGTACAGTCTTTAGGCTATATAAGGTCATTCCACATCCAGCTTGAGGGCTGTGATATTATGGGAGACTGCTGCATACATTTAGAAAAACTAGAAACTGAATCGATCATGGCCCTGACGCAACTGCGGAAACAAGAAATAATTTCCAATTACCAAGTTCACGAAACCGACACTGGCTCGGCCGATGTCCAAGTAGCCATGCTCACTGAGCGGATTAACCGCCTCAGCGAACATCTCCAGGCAAATAAAAAAGACCATTCTTCCCGGCGGGGACTGTTAAAGCTAATTGGTCAGCGCAAGCGTCTTCTAGCTTATATATCGCAGGAAAGCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 10 6157415-6156935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6157414 36 100.0 41 .................................... TCCATCTAAAATATGCATTAGAAACCACAGATAAATCTGGT 6157337 36 100.0 36 .................................... TTCACACCGTAATCCGTACTTTCCGAAATATTATTT 6157265 36 100.0 40 .................................... TCTTTAATAACTTCCATTTTTACAATGGTGCCATCTTCGC 6157189 36 100.0 35 .................................... GAGGAGGTAAGACGCAAATAGCCGCCTGTAGCAAC 6157118 36 94.4 38 .........TG......................... GACATGGATAAATAATCCTTACCCGTGGCAAACTTTGC 6157044 36 97.2 38 ..........G......................... TCTTTCACGTCAAGAGTCTGGATCGTTGCCGATCCTAA 6156970 36 77.8 0 ....C.....G..CTA.....C........AA.... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 95.6 38 CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : ATATGCTATTGATACGCTCAAACATAATGCGCCAATATGGAAGAAAGAACATTGGGAAGATGGTTCTAGCCGTTGGGTGAGTATTGGCGCTTGTGAAACATCAGGAGAAAATTGTTAAGATTCCAGAAACAATCATCTACCTTCTTGTCTAGGTTAGCTGAGTTTTCAGTTAACCTAGACTAACAAAAAGTTCGTCTTCAGGGAGTAGGAAGGTAAAAAAAGATTTGACATTTCTGCCCACAATTATTAAGGGTTTTGAAAAAATATTGACAACTACAGGTAAAGTAATATACCTTTTTCCTAAATGTGTTGAACTCATCGACACACCTCGCCCGAACCTTGAAAACCGCATAACCTCGTTGAGGTGTGTCGATGCCTTATGCAGTAAGCCTTTCAAGCTGCAAAATTGATGATTTTTCAAAAAATTTTTGTGTTTTTCAAGAGGTGTGTCGATTAGGGGGTCTAAAACTCTCTCACAGTAAGGCTTCCAGAAGTGAACT # Right flank : AAAAACTCACCATGCGATCGCACCAACGTAGCTATCAACCACCTAAAACGCCAGTGGATAAGCTAAGGTAAAATTTATGGCTATGGTAATGTAAGATGATTATCTGGATGATGTCTGGTTAATATCCATAACCAAAACAAAATCTAAATTACTAAAGCTGAGATTTGGGAAACTCCGGTGAAATTCCGGGACTGTGCCGCAGCTGTGATGGGATCACCCAAGTCAGAATGCCAACTCTCAGGATGTCCTCAAGACATACTCACCGTCTACTCCCTGCGTTGCACGGGGAAGGAGTTCTAAATTTGCTTTCTGGATTTGCCACTTGTCCTGGCTTGTTTTATGCTACTCCCGCCGCAGATGGTATATTATCTCGCATTAGAATACCAGGTGGAATTATTAGTAGTCAGCAGTGCCGTGCGATCGCAGATATAGCAGAACAGCACGGTGGCGGCTATATAGATGTGACTAATCGAGCTAACCTGCAAGTCCGTGAAATCCGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 11 6931476-6930718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 6931475 37 100.0 30 ..................................... AGATGGTGAGATGTTGACAGAAAACAAAAA 6931408 37 100.0 35 ..................................... TTAGGTAGGATTAGTCATCAAGCGACGTGAACACG 6931336 37 100.0 34 ..................................... AAATTCTTCCATATCTCCCTTTTCATCTGGTAGA 6931265 37 100.0 42 ..................................... GTTGTTTTCTCCGCTTTTAGTATCCTTCCTGCGGTCGCGCAA 6931186 37 100.0 33 ..................................... AAACTATTACAGCAAAAGCAGCTTGCTAATATT 6931116 37 100.0 32 ..................................... ATTGATATTTAAAGCGTTCTTCAAAATGTCAG 6931047 37 100.0 34 ..................................... TGCCTTGATGAAGCTGGAATCTTTCTAAATTCCA 6930976 37 100.0 38 ..................................... CTCGAACAGTGTCGGTAATGCCAAGTCCGACGGTTTGG 6930901 37 100.0 34 ..................................... AGACCGCTAACAGGATCAGGGTACTGGCGAATCT 6930830 37 100.0 35 ..................................... AGATGAAGATTGGAAAAAGAAAGATAAAAACAGGA 6930758 37 94.6 0 .............................C......A | TTG,A [6930723,6930730] ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 99.5 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : ATCGGCGGAGTTCTCTTTACTGACTTCGCTTCCGATTTCGGGTCTAGCGAAACCGTGCTAGGAGAACCAGGAGTGTTGCGAGATAAACCTGGAAGTGGCTTTGGTTACGGCTTAGGATTGCGTGTCAAGTCATCCTTTGGGCTGATTCGAGGCGACTTTGGAATTAGCGACCAAGGAGAACTTAGATTTGAAGTGACTACAGGTCAGCGATTTTAATCCTCTTTCTGCTTAGGTTCCTAGATGTCAAATGCGCGAAAGGGTAGGTGTAGAAATTCTACAGCCTCAAGAAAGTGCTTCTATCTCAATACCAGCAAGCATTTCACCCCACTTGTTGCCCAATTGCCATCCGCGCAATCTCTGAAATGCTTACAAAACTTGGGTTTTAGCCTTCAATCTTTCTCGATACTCTTCCCAAAGGAATTCTCTAATGCTATTATTGCTCTAGATTCGCGCAACCGCACCTTGAAAACTAAATACAGCTTGGCTTTCGGGCTGCCGCT # Right flank : GTATTTCGCTGTGACTTTAGACACTTTTAGACACTTTTAGATTCCCATTAAAAAGGCTACGGTGTATACAGAAGTCTAAAATAGTTTACTCACATGTTTTTTCGCGTCAGTTTTACCCCACCCTAACCCTCCCGGGTAATTTGACTTGTGTGTACACCGTAGCCTTTGCAAGGGGGGAGCCGGAATCAAAGTCTCCCTTAAAAAGGGAGACTTTGAGGGATCTAAAACTTTTGATACCAACAAGAGGACTTTTCAAACATCCTCTGAGAGCCTATTTACTTGTTAAATCCTATCTTAGGGATCAAAACTTATAATCAATGTAATTCAGGGGTTTGAGACACTCTGATAGCTTACTGGTTTAACGGAATTACAATTAAAAATTCTGTTCCTTCACCAGGAGCAGAAATACATTGTAATTTTCCCCGATGTTTTTGAGTGATAATTTGGTAACTAATAGATAAACCTAACCCAGTACCTTTACCAATTGGTTTAGTAGTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 12 7133454-7133051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054698.1 Nostoc edaphicum CCNP1411 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 7133453 36 100.0 36 .................................... TTAATATCATGACCTTTTTCAAGGATATTGCCAGAA 7133381 36 100.0 38 .................................... AAATTACCACCAATCAAAGCAGCAGAAACTAAAAAAGA 7133307 36 100.0 35 .................................... CTTTGATGTTTGCTTAACTGCGTTTGAATTACTTA 7133236 36 100.0 38 .................................... TTTTGAATCTTTGGAGGTGTAAAGGAGTAATGCCCCTT 7133162 36 100.0 40 .................................... TGGACTGAGGATTGGCGGTCTGAGTTTGCCCTTCGGTCAC 7133086 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 100.0 38 CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : CTTCTTCAATTCCGATTGCGTAATGGCAGTATAAGTCAATTCTGCTGACTTTTCACGTTATGTGGAGAAGTCCACGAAAAACCTAACCCCCTAACCCCCTTCCCGATGCGGGAAGGGGGAAATTCAAAGTCTCTCTCCTTTTAGGAGAGAGATTTAGAGAGAGGTTTTCCAGATGCCGCTGAATTGTCAGGTCAATTCTGGGTTTAGAAATGCGATCGCCCAAATTCCCTAGTTTTTTGTAACAATCGTGTAATAGATTTGACAAAAAAGGCGTAAAAGTTTTAGTTTGGAAGCAGCGTATGTCGTTCATCGACACCACTCGCCCGAACCTTGAAAACCGCATAACTTGGTTGACTGGTGTCGATTGCTTACACAGCAAGGCTTTCAAGCTGTGAAATGCATTGGTTATTGACAATATTTCGGGAGTTATTGACACTAAAAAAGTGGCGTCGATTAGGGGGTCTGAAACCCGCTCCTGGTAAGGTTTCCAGAAGTGAACT # Right flank : TTTTGTTCCAACTCTGGAACAAAAATGGCGGGACTTACTTTACGATCACAAAGACGCGATAAATCGCCGTCTCTACAAAAATCAGTCCTTGTAGAGACGGCGATTTATCGCGTCTATTGCTCAACCGAACTTTCCTCGCACTCATTTTCTACGAGATTTGCTTGGGTGGAACGTAATTCTTCTAACGCCAATTCTAAACAGCGATTTTTCTCATCTAACTCCCGCGTCCGTTCGCGCACCTTCTTTTCTAGCACCTGACTGTATACTTCTAACTGTTCATTAGCATCCTTTTGGGCTTTGATGAGTTGCTGAACTTCCTGGATAAGACGATTGAGAGAAGTCGCTAAGATGCCAACTTCATCATTAGTCGTGACGGGTGCTTGTAAATCGAAATTAGATTCTTCTGTAACCTGTTGGGCAATATGAGTGACAGCTTGAATGGGACGGGCAATGGCGCGACTGGTGTAAATTGCTAATAATGTAGCGATCGCAATTGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //