Array 1 155149-154821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSN01000033.1 Pectobacterium brasiliense strain CFIA1009 scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 155148 28 100.0 32 ............................ GTTTGAATCAGCGATGGCATACATGAACGGGT 155088 28 100.0 32 ............................ CCAACCGCCAAACTCGCCATAGCCGCTATCAC 155028 28 100.0 32 ............................ ACGAACTACGCCCAGACCTTTACCCAAACCCG 154968 28 92.9 32 ...........C........A....... CGCCGGAAACCCAGCGCAGCTGGTTACACGCT 154908 28 96.4 32 .C.......................... CTTGAGCAGCAGTTAGCAGCAGAACGGGCGAA 154848 28 78.6 0 ...........C.C........CG.CG. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGGTTTCTGAGTGCAAAACCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCAGAAGCCGCAGCACGCATTCCTGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAAATGTTTTTCGTGTTTTTAGAACATGGTCCGCTACAGGATGCTCCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCATTCCTTGGTTCTGACCCTTTTTGGGCGACCAACTGCAAGTTATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGGTTTCGCGATAAAATGAATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAAAGGAACA # Right flank : TTATCGAAATGCGTCGCTGGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGTGTGACAACCAGCGAGCGTCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTATTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTGTGTTTGATGAACACTTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 164097-165084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSN01000033.1 Pectobacterium brasiliense strain CFIA1009 scaffold37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 164097 28 100.0 32 ............................ CAGGTAATCTGCATCTTGTTGCACATCGTTGG 164157 28 100.0 32 ............................ ATAAACAGGATTTGCGGCACCCCGTGCAGCAC 164217 28 100.0 32 ............................ ATCCCAGCAGCGGCAAGTAATTGAAGTGTCGC 164277 28 100.0 32 ............................ GCGCCGCACTACGCATGCCGATTGTCACAGAA 164337 28 100.0 32 ............................ TAACGTTGCCTGTGCAGCCTCCGGTGTTCCAC 164397 28 100.0 32 ............................ AGTGGGTTCCCGCCGCGTGCTGCTGTACCTTG 164457 28 100.0 32 ............................ GTGCCGTGGTCAGATACTCCGAGGATTCTGGT 164517 28 96.4 32 .............T.............. TGCATACATCGAGCGAATCAAACAGGCAGATG 164577 28 96.4 32 .............T.............. AGCCAATTGTGAGCTAAACTTGCTACCCTCAA 164637 28 92.9 32 ...........G.T.............. TGATTTAGGTCGGCTTTTTGCGGCGTGATGTT 164697 28 89.3 32 ...........GTT.............. GTCCTTGCGCTCTAGCTGCGGAGCGGCGGCAA 164757 28 100.0 32 ............................ GGCCGGAATTTCAACAAGCGGCGTGCCGGTGA 164817 28 100.0 32 ............................ GGACGGGGAAGCCTGGGCGGCACGCAAGGGAA 164877 28 92.9 32 ...........T.T.............. GCTGGATAATTCCCTGGAAGATTTCCTGCAAT 164937 28 89.3 32 .........T.T.T.............. AGATCGCCGGCGTTTAACTGCCGCTGGTAGTA 164997 28 96.4 32 ...........A................ ATGCTGCTATTAGGCGAGATAGTTATGAATAC 165057 28 82.1 0 ...........T........T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 17 28 96.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGTAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCTGGCTACA # Right flank : ACGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAACACTATCGGCAGGTTTTGATGCGTTATCATCGTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAATGGGTTTCTTTGTGTGGAATGGAAAATTACGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCGAATCCCAATCAATCGTGGAAAACGGCCATATTTGGTTGTACCGATCCTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 172019-171451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSN01000033.1 Pectobacterium brasiliense strain CFIA1009 scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 172018 28 100.0 32 ............................ ATTAGATTAGAACTGGAAACCACCGCGATAAT 171958 28 100.0 32 ............................ TTTCCCCGCCAATGCGAGCGTGCGACGAAACC 171898 28 100.0 32 ............................ ATGCTGGTGTGTGGGCTGATGACAGTCAGATT 171838 28 100.0 32 ............................ GACTACATCGATCACGCCGGCTTCGCTCACTA 171778 28 100.0 32 ............................ CAGCCCATTTTAGACATAGCACGAATAAACAT 171718 28 100.0 32 ............................ AGCGGGAAATATTTGTCAGACAGCAACTGACG 171658 28 100.0 32 ............................ AACCTCAGCAGGCTACGCAAAATAGCTAATGC 171598 28 100.0 32 ............................ ATACTCAGGCTGTTCCCGACAATCACCATCGC 171538 28 96.4 32 .............C.............. AGCCGCTCAACGTAAGCCCCGCGATTTTCTCA 171478 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGGCATAGGTCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCACCCAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //