Array 1 480126-481251 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWMX01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 632 NODE_3_length_663614_cov_53.5862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 480126 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 480187 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 480248 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 480309 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 480370 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 480431 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 480492 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 480553 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 480614 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 480675 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 480736 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 480797 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 480858 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 480919 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 480980 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 481041 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 481102 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 481163 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 481224 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 497510-498679 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWMX01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 632 NODE_3_length_663614_cov_53.5862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 497510 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 497571 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 497632 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 497693 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 497754 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 497815 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 497876 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 497937 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 497998 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 498101 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 498162 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 498223 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 498284 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 498345 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 498406 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 498467 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 498528 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 498589 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 498650 29 96.6 0 A............................ | A [498675] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //